BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cephaelis21_contig00034932
         (1218 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BAB09815.1| non-LTR retroelement reverse transcriptase-like ...   206   1e-50
gb|AAF23831.1|AC007234_3 F1E22.12 [Arabidopsis thaliana]              196   8e-48
sp|P0C2F6.1|RNHX1_ARATH RecName: Full=Putative ribonuclease H pr...   196   8e-48
gb|AAC63844.1| putative non-LTR retroelement reverse transcripta...   190   5e-46
gb|AAC26674.1| putative non-LTR retroelement reverse transcripta...   186   8e-45

>dbj|BAB09815.1| non-LTR retroelement reverse transcriptase-like [Arabidopsis
            thaliana]
          Length = 676

 Score =  206 bits (523), Expect = 1e-50
 Identities = 122/336 (36%), Positives = 173/336 (51%), Gaps = 3/336 (0%)
 Frame = -3

Query: 1120 DDSCVWKLSTSGKFSASIAYEKLSMHLWNQP--SEEAGRLWKLACPQRVRSFIWLARNQK 947
            +D   W  + +G+F+ S AY   S+   ++   S    R+W++  P+R R F+WL  NQ 
Sbjct: 308  EDKMSWVGTENGRFTVSSAYLIQSVDEISKQCMSRFFDRVWRVMVPERARIFLWLVGNQV 367

Query: 946  VLTNDNRARRGLTDSTECPQCGHALESILHVLRDCPRAREVWDLLEPTSGTRNSNTLQWE 767
            VLTN  R RR + DS  CP C  A ES++HVLRDCP    +W  + P    R        
Sbjct: 368  VLTNAERVRRHMADSDVCPLCKGASESLIHVLRDCPAMMGIWMRVVPVMEQRRFFETSLL 427

Query: 766  EWFDTNIGNTNAVRNSRVQWNTIFATTCWYIWKRRNEKVFRDGSTSRYDVTTQAWLMAKH 587
            EW   N+   +   + R  W T+FA T W+ WK R   VF + S  R  V      +A+ 
Sbjct: 428  EWMYGNLKERSD--SERRSWPTLFALTVWWGWKWRCGYVFGEDSRCRDRVKFLKSAVAE- 484

Query: 586  STEGLRHRESGEGKNKSPRMKEAKWSKPPVDLVKLNSDGARDPSSGWATAGGVIRDHLGQ 407
              E      +G+ +      +   W KP    V +N+DGA   + G ATAGGVIRD  G 
Sbjct: 485  -VEAAHLAANGDAREDVLVERMIAWRKPAEGWVTMNTDGASHGNPGQATAGGVIRDEHGS 543

Query: 406  WMCGYGRLIGNCSVL*AELWGCLDGLSLAWEKGFRNIKVELDNAEAIKMI-NGLDDDWTH 230
            W+ G+   IG CS   AELWG   GL +AWE+G+R +++E+D+A  +  + +G+ D    
Sbjct: 544  WLVGFALNIGVCSAPLAELWGVYYGLVVAWERGWRRVRLEVDSALVVGFLQSGIGDSHPL 603

Query: 229  CALVRKIWQMCKREWNCECRHVLREANKLADSMARY 122
              LVR       ++W     HV REAN+LAD +A Y
Sbjct: 604  AFLVRLCHGFISKDWIVRITHVYREANRLADGLANY 639


>gb|AAF23831.1|AC007234_3 F1E22.12 [Arabidopsis thaliana]
          Length = 1055

 Score =  196 bits (499), Expect = 8e-48
 Identities = 118/337 (35%), Positives = 173/337 (51%), Gaps = 5/337 (1%)
 Frame = -3

Query: 1117 DSCVWKLSTSGKFSASIAYEKLSMHLWNQPSEEA--GRLWKLACPQRVRSFIWLARNQKV 944
            D   WK S  G+FS   AYE L++    +P+  +    LWK+  P+RV++F+WL  NQ V
Sbjct: 362  DRLSWKFSQDGQFSVRSAYEMLTVDEVPRPNMASFFNCLWKVRVPERVKTFLWLVGNQAV 421

Query: 943  LTNDNRARRGLTDSTECPQCGHALESILHVLRDCPRAREVWDLLEPTSGTRNSNTLQWEE 764
            +T + R RR L+ S  C  C   +ES+LHVLRDCP    +W  + P    +   +    E
Sbjct: 422  MTEEERHRRHLSASNVCQVCKGGVESMLHVLRDCPAQLGIWVRVVPQRRQQGFFSKSLFE 481

Query: 763  WFDTNIGNTNAVRNSRVQWNTIFATTCWYIWKRRNEKVFRDGSTSRYDVT-TQAWLMAKH 587
            W   N+G+ +   +  + W+TIFA   W+ WK R   +F + +  R  V   + W +  +
Sbjct: 482  WLYDNLGDRSGCED--IPWSTIFAVIIWWGWKWRCGNIFGENTKCRDRVKFVKEWAVEVY 539

Query: 586  STEGLRHRESGEGKNKSPRMKE-AKWSKPPVDLVKLNSDGARDPSSGWATAGGVIRDHLG 410
                  H  +       PR++    W  P V  VK+N+DGA   + G A+AGGV+RD  G
Sbjct: 540  RA----HSGNVLVGITQPRVERMIGWVSPCVGWVKVNTDGASRGNPGLASAGGVLRDCTG 595

Query: 409  QWMCGYGRLIGNCSVL*AELWGCLDGLSLAWEKGFRNIKVELDNAEAIKMI-NGLDDDWT 233
             W  G+   IG CS   AELWG   GL  AWEK    +++E+D+   +  +  G+ D   
Sbjct: 596  AWCGGFSLNIGRCSAPQAELWGVYYGLYFAWEKKVPRVELEVDSEVIVGFLKTGISDSHP 655

Query: 232  HCALVRKIWQMCKREWNCECRHVLREANKLADSMARY 122
               LVR      +++W     HV REAN+LAD +A Y
Sbjct: 656  LSFLVRLCHGFLQKDWLVRIVHVYREANRLADGLANY 692


>sp|P0C2F6.1|RNHX1_ARATH RecName: Full=Putative ribonuclease H protein At1g65750
          Length = 620

 Score =  196 bits (499), Expect = 8e-48
 Identities = 118/337 (35%), Positives = 173/337 (51%), Gaps = 5/337 (1%)
 Frame = -3

Query: 1117 DSCVWKLSTSGKFSASIAYEKLSMHLWNQPSEEA--GRLWKLACPQRVRSFIWLARNQKV 944
            D   WK S  G+FS   AYE L++    +P+  +    LWK+  P+RV++F+WL  NQ V
Sbjct: 253  DRLSWKFSQDGQFSVRSAYEMLTVDEVPRPNMASFFNCLWKVRVPERVKTFLWLVGNQAV 312

Query: 943  LTNDNRARRGLTDSTECPQCGHALESILHVLRDCPRAREVWDLLEPTSGTRNSNTLQWEE 764
            +T + R RR L+ S  C  C   +ES+LHVLRDCP    +W  + P    +   +    E
Sbjct: 313  MTEEERHRRHLSASNVCQVCKGGVESMLHVLRDCPAQLGIWVRVVPQRRQQGFFSKSLFE 372

Query: 763  WFDTNIGNTNAVRNSRVQWNTIFATTCWYIWKRRNEKVFRDGSTSRYDVT-TQAWLMAKH 587
            W   N+G+ +   +  + W+TIFA   W+ WK R   +F + +  R  V   + W +  +
Sbjct: 373  WLYDNLGDRSGCED--IPWSTIFAVIIWWGWKWRCGNIFGENTKCRDRVKFVKEWAVEVY 430

Query: 586  STEGLRHRESGEGKNKSPRMKE-AKWSKPPVDLVKLNSDGARDPSSGWATAGGVIRDHLG 410
                  H  +       PR++    W  P V  VK+N+DGA   + G A+AGGV+RD  G
Sbjct: 431  RA----HSGNVLVGITQPRVERMIGWVSPCVGWVKVNTDGASRGNPGLASAGGVLRDCTG 486

Query: 409  QWMCGYGRLIGNCSVL*AELWGCLDGLSLAWEKGFRNIKVELDNAEAIKMI-NGLDDDWT 233
             W  G+   IG CS   AELWG   GL  AWEK    +++E+D+   +  +  G+ D   
Sbjct: 487  AWCGGFSLNIGRCSAPQAELWGVYYGLYFAWEKKVPRVELEVDSEVIVGFLKTGISDSHP 546

Query: 232  HCALVRKIWQMCKREWNCECRHVLREANKLADSMARY 122
               LVR      +++W     HV REAN+LAD +A Y
Sbjct: 547  LSFLVRLCHGFLQKDWLVRIVHVYREANRLADGLANY 583


>gb|AAC63844.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1231

 Score =  190 bits (483), Expect = 5e-46
 Identities = 119/368 (32%), Positives = 175/368 (47%), Gaps = 6/368 (1%)
 Frame = -3

Query: 1207 WNWDLLETVLEINVVHFIAGIHPPDANDSDDSCVWKLSTSGKFSASIAYEKLSMHLWNQP 1028
            WN ++L   L   V   +  +       + D   WK +  G F+   AY  L   + ++P
Sbjct: 838  WNLEILGLYLPETVKRRLLSVVVQVFLGNGDEISWKGTQDGAFTVRSAYSLLQGDVGDRP 897

Query: 1027 SEEA--GRLWKLACPQRVRSFIWLARNQKVLTNDNRARRGLTDSTECPQCGHALESILHV 854
            +  +   R+WKL  P+RVR FIWL     ++TN  R RR L+++  C  C  A E+ILHV
Sbjct: 898  NMGSFFNRIWKLITPERVRVFIWLVSQNVIMTNVERVRRHLSENAICSVCNGAEETILHV 957

Query: 853  LRDCPRAREVWDLLEPTSGTRNSNTLQWEEWFDTNIGNTNAVRNSRVQWNTIFATTCWYI 674
            LRDCP    +W  L P        +    EW  TN+     +      W T+F    W+ 
Sbjct: 958  LRDCPAMEPIWRRLLPLRRHHEFFSQSLLEWLFTNMDPVKGI------WPTLFGMGIWWA 1011

Query: 673  WKRRNEKVFRDGSTSRYDVTTQAWLMAKHSTEGLRHRESGEGKNKSPRMKEAK---WSKP 503
            WK R   VF +    R  +        K   E +R    G   N+   ++  +   W  P
Sbjct: 1012 WKWRCCDVFGERKICRDRLK-----FIKDMAEEVRRVHVGAVGNRPNGVRVERMIRWQVP 1066

Query: 502  PVDLVKLNSDGARDPSSGWATAGGVIRDHLGQWMCGYGRLIGNCSVL*AELWGCLDGLSL 323
                VK+ +DGA   + G A AGG IR+  G+W+ G+   IG+C+   AELWG   GL +
Sbjct: 1067 SDGWVKITTDGASRGNHGLAAAGGAIRNGQGEWLGGFALNIGSCAAPLAELWGAYYGLLI 1126

Query: 322  AWEKGFRNIKVELDNAEAIKMIN-GLDDDWTHCALVRKIWQMCKREWNCECRHVLREANK 146
            AW+KGFR ++++LD    +  ++ G+ +      LVR       R+W     HV REAN+
Sbjct: 1127 AWDKGFRRVELDLDCKLVVGFLSTGVSNAHPLSFLVRLCQGFFTRDWLVRVSHVYREANR 1186

Query: 145  LADSMARY 122
            LAD +A Y
Sbjct: 1187 LADGLANY 1194


>gb|AAC26674.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 970

 Score =  186 bits (473), Expect = 8e-45
 Identities = 117/338 (34%), Positives = 159/338 (47%), Gaps = 6/338 (1%)
 Frame = -3

Query: 1117 DSCVWKLSTSGKFSASIAYEKLSMHLWNQP--SEEAGRLWKLACPQRVRSFIWLARNQKV 944
            D   WK + +G F+   AYE L      +P       ++WKL  P+RVR FIWL  +  +
Sbjct: 609  DELSWKGTQNGDFTVRSAYELLKPEAEERPLIGSFLKQIWKLVAPERVRVFIWLVSHMVI 668

Query: 943  LTNDNRARRGLTDSTECPQCGHALESILHVLRDCPRAREVWDLLEPTSGTRNSNTLQWEE 764
            +TN  R RR L+D   C  C  A ESILHVLRDCP    +W  L P    R +      E
Sbjct: 669  MTNVERVRRHLSDIATCSVCNGADESILHVLRDCPAMTPIWQRLLPQ--RRQNEFFSQFE 726

Query: 763  WFDTNIGNTNAVRNSRVQWNTIFATTCWYIWKRRNEKVFRDGSTSRYDVTTQAWLMAKHS 584
            W  TN+        ++  W T+F+   W+ WK R   VF +    R           K  
Sbjct: 727  WLFTNLD------PAKGDWPTLFSMGIWWAWKWRCGDVFGERKLCR-----DRLKFIKDI 775

Query: 583  TEGLRHRESGEGKNKSPRM---KEAKWSKPPVDLVKLNSDGARDPSSGWATAGGVIRDHL 413
             E +R    G   N   R    +  +W  P    VKL +DGA     G A A G I +  
Sbjct: 776  AEEVRKAHVGTLNNHVKRARVERMIRWKAPSDRWVKLTTDGASRGHQGLAAASGAILNLQ 835

Query: 412  GQWMCGYGRLIGNCSVL*AELWGCLDGLSLAWEKGFRNIKVELDNAEAIKMIN-GLDDDW 236
            G+W+ G+   IG+C    AELWG   GL +AW+KGFR +++ LD+   +  ++ G+    
Sbjct: 836  GEWLGGFALNIGSCDAPLAELWGAYYGLLIAWDKGFRRVELNLDSELVVGFLSTGISKAH 895

Query: 235  THCALVRKIWQMCKREWNCECRHVLREANKLADSMARY 122
                LVR       R+W     HV REAN+LAD +A Y
Sbjct: 896  PLSFLVRLCQGFFTRDWLVRVSHVYREANRLADGLANY 933