BLASTX nr result

ID: Cephaelis21_contig00032100 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cephaelis21_contig00032100
         (559 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

pdb|4GR6|A Chain A, Crystal Structure Of Atrbcx2 From Arabidopsi...    59   5e-07
ref|NP_568382.1| Chaperonin-like RbcX protein [Arabidopsis thali...    59   5e-07
ref|XP_002873967.1| hypothetical protein ARALYDRAFT_910022 [Arab...    57   2e-06
ref|NP_001241067.1| uncharacterized protein LOC100786585 [Glycin...    57   2e-06
ref|NP_001236640.1| uncharacterized protein LOC100526969 [Glycin...    57   2e-06

>pdb|4GR6|A Chain A, Crystal Structure Of Atrbcx2 From Arabidopsis Thaliana
           gi|444302236|pdb|4GR6|B Chain B, Crystal Structure Of
           Atrbcx2 From Arabidopsis Thaliana
          Length = 126

 Score = 58.9 bits (141), Expect = 5e-07
 Identities = 24/31 (77%), Positives = 29/31 (93%)
 Frame = +3

Query: 465 QKILNFFTYKAVRTVLHQLSEINPPQYMWFY 557
           ++I+N+FTYKAVRTVLHQL E+NPPQY WFY
Sbjct: 17  KQIVNYFTYKAVRTVLHQLYEMNPPQYTWFY 47


>ref|NP_568382.1| Chaperonin-like RbcX protein [Arabidopsis thaliana]
           gi|21593746|gb|AAM65713.1| unknown [Arabidopsis
           thaliana] gi|28393243|gb|AAO42050.1| unknown protein
           [Arabidopsis thaliana] gi|28827676|gb|AAO50682.1|
           unknown protein [Arabidopsis thaliana]
           gi|332005374|gb|AED92757.1| Chaperonin-like RbcX protein
           [Arabidopsis thaliana]
          Length = 203

 Score = 58.9 bits (141), Expect = 5e-07
 Identities = 24/31 (77%), Positives = 29/31 (93%)
 Frame = +3

Query: 465 QKILNFFTYKAVRTVLHQLSEINPPQYMWFY 557
           ++I+N+FTYKAVRTVLHQL E+NPPQY WFY
Sbjct: 94  KQIVNYFTYKAVRTVLHQLYEMNPPQYTWFY 124


>ref|XP_002873967.1| hypothetical protein ARALYDRAFT_910022 [Arabidopsis lyrata subsp.
           lyrata] gi|297319804|gb|EFH50226.1| hypothetical protein
           ARALYDRAFT_910022 [Arabidopsis lyrata subsp. lyrata]
          Length = 204

 Score = 57.0 bits (136), Expect = 2e-06
 Identities = 23/31 (74%), Positives = 28/31 (90%)
 Frame = +3

Query: 465 QKILNFFTYKAVRTVLHQLSEINPPQYMWFY 557
           ++I+N+FTYKAVRTVLHQL E+NPP Y WFY
Sbjct: 94  KQIVNYFTYKAVRTVLHQLYEMNPPHYTWFY 124


>ref|NP_001241067.1| uncharacterized protein LOC100786585 [Glycine max]
           gi|255640127|gb|ACU20354.1| unknown [Glycine max]
          Length = 225

 Score = 57.0 bits (136), Expect = 2e-06
 Identities = 23/30 (76%), Positives = 28/30 (93%)
 Frame = +3

Query: 468 KILNFFTYKAVRTVLHQLSEINPPQYMWFY 557
           ++LN+FTYKAVRTVLHQL E+NPP+Y WFY
Sbjct: 114 QMLNYFTYKAVRTVLHQLYEMNPPKYTWFY 143


>ref|NP_001236640.1| uncharacterized protein LOC100526969 [Glycine max]
           gi|255631274|gb|ACU16004.1| unknown [Glycine max]
          Length = 220

 Score = 57.0 bits (136), Expect = 2e-06
 Identities = 23/30 (76%), Positives = 28/30 (93%)
 Frame = +3

Query: 468 KILNFFTYKAVRTVLHQLSEINPPQYMWFY 557
           ++LN+FTYKAVRTVLHQL E+NPP+Y WFY
Sbjct: 109 QMLNYFTYKAVRTVLHQLYEMNPPKYTWFY 138


Top