BLASTX nr result
ID: Cephaelis21_contig00031245
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cephaelis21_contig00031245
(1502 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAF23831.1|AC007234_3 F1E22.12 [Arabidopsis thaliana] 159 2e-36
sp|P0C2F6.1|RNHX1_ARATH RecName: Full=Putative ribonuclease H pr... 159 2e-36
gb|ABD28505.2| RNA-directed DNA polymerase (Reverse transcriptas... 148 3e-33
gb|ABW81175.1| non-LTR retrotransposon transposase [Arabidopsis ... 138 4e-30
gb|AAD22368.1| putative non-LTR retroelement reverse transcripta... 134 5e-29
>gb|AAF23831.1|AC007234_3 F1E22.12 [Arabidopsis thaliana]
Length = 1055
Score = 159 bits (401), Expect = 2e-36
Identities = 109/371 (29%), Positives = 172/371 (46%), Gaps = 4/371 (1%)
Frame = +1
Query: 364 GAQDQVWWGLSNDGRFSIKSVMIFLXXXXXXXXXXXXLWKLVWAWKGPEKLRTFLWLIVH 543
GA+D++ W S DG+FS++S L + +W + PE+++TFLWL+ +
Sbjct: 359 GARDRLSWKFSQDGQFSVRSAYEMLTVDEVPRPNMASFFNCLWKVRVPERVKTFLWLVGN 418
Query: 544 RRLPTAKLCFDRKVIQSSRCHRCGIDPENIIHVLRDCSFAKGVWLQLVHQNKWESFFSLT 723
+ + T + R + S+ C C E+++HVLRDC G+W+++V Q + + FFS +
Sbjct: 419 QAVMTEEERHRRHLSASNVCQVCKGGVESMLHVLRDCPAQLGIWVRVVPQRRQQGFFSKS 478
Query: 724 VQDWIRQNLVDDYGSEPGLQSPWKLRFVVACWSLWIWRNNFIFSEDAVSQEQPLXXXXXX 903
+ +W+ NL D G E PW F V W W WR IF E+ +++
Sbjct: 479 LFEWLYDNLGDRSGCE---DIPWSTIFAVIIWWGWKWRCGNIFGENTKCRDRVKFVKEWA 535
Query: 904 XXXXXXSSTTLGKIPGICKHKINGWCAWTPPELGWIKVNCNGAVDWVRGIATIGGVLRDS 1083
S + + GI + ++ W P +GW+KVN +GA G+A+ GGVLRD
Sbjct: 536 VEVYRAHSGNV--LVGITQPRVERMIGWVSPCVGWVKVNTDGASRGNPGLASAGGVLRDC 593
Query: 1084 EGN*ISGFSQVIEFGDVLSTKLKTLMMGFSLARRMGYVKIQLEPDSQSAVDLVKRRIEGW 1263
G GFS I +L + G A +++LE DS+ V +K I
Sbjct: 594 TGAWCGGFSLNIGRCSAPQAELWGVYYGLYFAWEKKVPRVELEVDSEVIVGFLKTGI--- 650
Query: 1264 DTDMHILEEVGSVWESRLG----LNISHVVRECNSIADWLTRRGSVGSQGLRI*PSPPIQ 1431
+D H L + + L + I HV RE N +AD L S G P
Sbjct: 651 -SDSHPLSFLVRLCHGFLQKDWLVRIVHVYREANRLADGLANYAFSLSLGFHSFDLVPDA 709
Query: 1432 VVEVVCKETLG 1464
+ ++ ++TLG
Sbjct: 710 MSSLLREDTLG 720
>sp|P0C2F6.1|RNHX1_ARATH RecName: Full=Putative ribonuclease H protein At1g65750
Length = 620
Score = 159 bits (401), Expect = 2e-36
Identities = 109/371 (29%), Positives = 172/371 (46%), Gaps = 4/371 (1%)
Frame = +1
Query: 364 GAQDQVWWGLSNDGRFSIKSVMIFLXXXXXXXXXXXXLWKLVWAWKGPEKLRTFLWLIVH 543
GA+D++ W S DG+FS++S L + +W + PE+++TFLWL+ +
Sbjct: 250 GARDRLSWKFSQDGQFSVRSAYEMLTVDEVPRPNMASFFNCLWKVRVPERVKTFLWLVGN 309
Query: 544 RRLPTAKLCFDRKVIQSSRCHRCGIDPENIIHVLRDCSFAKGVWLQLVHQNKWESFFSLT 723
+ + T + R + S+ C C E+++HVLRDC G+W+++V Q + + FFS +
Sbjct: 310 QAVMTEEERHRRHLSASNVCQVCKGGVESMLHVLRDCPAQLGIWVRVVPQRRQQGFFSKS 369
Query: 724 VQDWIRQNLVDDYGSEPGLQSPWKLRFVVACWSLWIWRNNFIFSEDAVSQEQPLXXXXXX 903
+ +W+ NL D G E PW F V W W WR IF E+ +++
Sbjct: 370 LFEWLYDNLGDRSGCE---DIPWSTIFAVIIWWGWKWRCGNIFGENTKCRDRVKFVKEWA 426
Query: 904 XXXXXXSSTTLGKIPGICKHKINGWCAWTPPELGWIKVNCNGAVDWVRGIATIGGVLRDS 1083
S + + GI + ++ W P +GW+KVN +GA G+A+ GGVLRD
Sbjct: 427 VEVYRAHSGNV--LVGITQPRVERMIGWVSPCVGWVKVNTDGASRGNPGLASAGGVLRDC 484
Query: 1084 EGN*ISGFSQVIEFGDVLSTKLKTLMMGFSLARRMGYVKIQLEPDSQSAVDLVKRRIEGW 1263
G GFS I +L + G A +++LE DS+ V +K I
Sbjct: 485 TGAWCGGFSLNIGRCSAPQAELWGVYYGLYFAWEKKVPRVELEVDSEVIVGFLKTGI--- 541
Query: 1264 DTDMHILEEVGSVWESRLG----LNISHVVRECNSIADWLTRRGSVGSQGLRI*PSPPIQ 1431
+D H L + + L + I HV RE N +AD L S G P
Sbjct: 542 -SDSHPLSFLVRLCHGFLQKDWLVRIVHVYREANRLADGLANYAFSLSLGFHSFDLVPDA 600
Query: 1432 VVEVVCKETLG 1464
+ ++ ++TLG
Sbjct: 601 MSSLLREDTLG 611
>gb|ABD28505.2| RNA-directed DNA polymerase (Reverse transcriptase); Polynucleotidyl
transferase, Ribonuclease H fold [Medicago truncatula]
Length = 729
Score = 148 bits (374), Expect = 3e-33
Identities = 93/331 (28%), Positives = 147/331 (44%), Gaps = 1/331 (0%)
Frame = +1
Query: 235 VFSQLSVEHFFNQTEDRRREYFQELLPMDVCHRIEKFSELLNPGAQDQVWWGLSNDGRFS 414
V + +SV N + + + L +D+ ++I + D + WG +N +F+
Sbjct: 386 VDTTISVRDAINTSGVWDLNFLMDNLHVDIVNQILALPTPSDFDGPDTIGWGGTNTLKFT 445
Query: 415 IKSVMIFLXXXXXXXXXXXXLWKLVWAWKGPEKLRTFLWLIVHRRLPTAKLCFDRKVIQS 594
++S WK +W WKGP +++TF+WL H R+ T V S
Sbjct: 446 VQSAYNLQQENPFAVGGD---WKTLWNWKGPHRIQTFIWLAAHGRILTNYRRSKWGVGIS 502
Query: 595 SRCHRCGIDPENIIHVLRDCSFAKGVWLQLVHQNKWESFFSLTVQDWIRQNL-VDDYGSE 771
C C + E +IHVLRDC + VWL+L+ N +FFS ++W+ NL G
Sbjct: 503 PTCPCCAREDETVIHVLRDCVHSTQVWLRLIPHNYITNFFSFDCREWVFNNLNKKGIGDN 562
Query: 772 PGLQSPWKLRFVVACWSLWIWRNNFIFSEDAVSQEQPLXXXXXXXXXXXXSSTTLGKIPG 951
P + W+ F+ CW LW WRN IF P ++ + K
Sbjct: 563 P---ATWQTTFMTTCWYLWNWRNKSIFEIGFQRPSNPTLVIQKFTREIEDNTKLVHKSS- 618
Query: 952 ICKHKINGWCAWTPPELGWIKVNCNGAVDWVRGIATIGGVLRDSEGN*ISGFSQVIEFGD 1131
K + W P GW+K+NC+GA +A GG+LRDS+G I G+ + I D
Sbjct: 619 --HQKETIYIGWMRPPFGWVKLNCDGAWKGSGTLAGCGGLLRDSDGRWIKGYFKKIGMCD 676
Query: 1132 VLSTKLKTLMMGFSLARRMGYVKIQLEPDSQ 1224
++ + +G +A R + +E DS+
Sbjct: 677 AFHAEMWGMYLGLDMAWRENTTHLIVESDSK 707
>gb|ABW81175.1| non-LTR retrotransposon transposase [Arabidopsis cebennensis]
Length = 799
Score = 138 bits (347), Expect = 4e-30
Identities = 100/347 (28%), Positives = 156/347 (44%), Gaps = 6/347 (1%)
Frame = +1
Query: 364 GAQDQVWWGLSNDGRFSIKSVMIFLXXXXXXXXXXXXLWKLVWAWKGPEKLRTFLWLIVH 543
G +D++ WG S DG+F++KS L ++ VW PE+++ FLWL VH
Sbjct: 429 GVRDRLSWGESLDGKFTVKSAYSSLMKDNTPRSDLSRMYDRVWKVIAPERVKIFLWLGVH 488
Query: 544 RRLPTAKLCFDRKVIQSSRCHRCGIDPENIIHVLRDCSFAKGVWLQLVHQNKWESFFSLT 723
+ + T R + + C C E IIH+LRDC G+W +++ + K +FF+ T
Sbjct: 489 QVIMTNMERQRRHLSDTGICQVCKGGDETIIHILRDCPAMYGIWTRIIPRRKRGTFFTQT 548
Query: 724 VQDWIRQNLVDDYGSEPGLQSPWKLRFVVACWSLWIWRNNFIFSEDAVSQEQP--LXXXX 897
+ +W+ NL D G G PW W W WR +F + ++ +
Sbjct: 549 LLEWVYDNL-GDSGKVDG--CPWS----CVRWG-WKWRCGNVFGVNGKCRDMVKFVRDRA 600
Query: 898 XXXXXXXXSSTTLGKIPGICKHKINGWCAWTPPELGWIKVNCNGAVDWVRGIATIGGVLR 1077
GKI G +I +W P GW+K+N +GA G+AT GG+LR
Sbjct: 601 SEVIQAHLVEGNSGKIRG----RIERMVSWVKPAEGWLKLNTDGASKGNPGLATAGGILR 656
Query: 1078 DSEGN*ISGFSQVIEFGDVLSTKLKTLMMGFSLARRMGYVKIQLEPDSQSAVDLVKRRIE 1257
+G+ I GF+ I +L + G +A ++++E DS +LV +
Sbjct: 657 QQDGSWIGGFAVNIGICSAPLAELWRVYYGLYIAWERKITRLEVEVDS----ELVVGFLT 712
Query: 1258 GWDTDMHILEEVGSVWESRLG----LNISHVVRECNSIADWLTRRGS 1386
W +D H L + + + + ISHV RE N +AD L S
Sbjct: 713 TWISDSHPLSFLVRLCYGFISRDWIVRISHVYREANRLADGLANYAS 759
>gb|AAD22368.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 321
Score = 134 bits (338), Expect = 5e-29
Identities = 94/325 (28%), Positives = 146/325 (44%)
Frame = +1
Query: 505 PEKLRTFLWLIVHRRLPTAKLCFDRKVIQSSRCHRCGIDPENIIHVLRDCSFAKGVWLQL 684
PE++R FLWL+V + + T + R + + C C E I+HVLRDC G+W +L
Sbjct: 3 PERVRVFLWLVVQQVIITNVERYRRHLSDTRVCQICQGGEETILHVLRDCPAMAGIWSRL 62
Query: 685 VHQNKWESFFSLTVQDWIRQNLVDDYGSEPGLQSPWKLRFVVACWSLWIWRNNFIFSEDA 864
V +++ FF+ ++ +WI +NL + + W FV+A W W WR IF +
Sbjct: 63 VPRDQIRQFFTASLLEWIYKNLRE--------RGSWPTVFVMAVWWGWKWRCGNIFGGNG 114
Query: 865 VSQEQPLXXXXXXXXXXXXSSTTLGKIPGICKHKINGWCAWTPPELGWIKVNCNGAVDWV 1044
+++ ++ G + ++ +W PE GW+K+N +GA
Sbjct: 115 KCRDRVKFIKDLAEEVAIANAFVKGN--EVRVSRVERLVSWVSPEDGWVKLNTDGASRGN 172
Query: 1045 RGIATIGGVLRDSEGN*ISGFSQVIEFGDVLSTKLKTLMMGFSLARRMGYVKIQLEPDSQ 1224
G AT GGVLRD G I GF+ I +L + G +A G +++LE DS+
Sbjct: 173 PGFATAGGVLRDHNGAWIGGFAVNIGVCSAPLAELWGVYYGLFIAWGRGARRVELEVDSK 232
Query: 1225 SAVDLVKRRIEGWDTDMHILEEVGSVWESRLGLNISHVVRECNSIADWLTRRGSVGSQGL 1404
V + I +L + ISHV RE N +AD L S GL
Sbjct: 233 MVVGFLTTGIADSHPLSFLLRLCYDFLSKGWIVRISHVYREANRLADGLANYAFSLSLGL 292
Query: 1405 RI*PSPPIQVVEVVCKETLGLQYLR 1479
+ S P V ++ + G+ Y R
Sbjct: 293 HLLESRPDVVSSILLDDVAGVSYPR 317