BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cephaelis21_contig00029578
         (1339 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002275898.2| PREDICTED: LOW QUALITY PROTEIN: DNA-directed...   311   3e-82
emb|CBI34757.3| unnamed protein product [Vitis vinifera]              309   9e-82
ref|XP_004147993.1| PREDICTED: DNA-directed RNA polymerase D sub...   301   2e-79
ref|XP_002298071.1| RNA polymerase IV subunit [Populus trichocar...   301   3e-79
gb|AAY89360.1| RNA polymerase IV largest subunit [Solanum lycope...   268   2e-69

>ref|XP_002275898.2| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase D subunit
            1-like [Vitis vinifera]
          Length = 1560

 Score =  311 bits (796), Expect = 3e-82
 Identities = 160/302 (52%), Positives = 208/302 (68%), Gaps = 13/302 (4%)
 Frame = -1

Query: 1339 SLNTAMGDIGKTFRPEHSVLTADCLSTAGEFVALNAKGLAQQRKATSVSSPFVQACFSNP 1160
            SL +A+ DIGKT  PEH +L A CLS  GEFV LNAKG+A+Q++ TS+SSPF+Q CFS+P
Sbjct: 1206 SLKSAISDIGKTVLPEHLLLVASCLSATGEFVGLNAKGMARQKELTSISSPFMQGCFSSP 1265

Query: 1159 ADCFVKAAKTGTVDNLQGTVDALSWGMVPSVGTGSQFDIIYHGKGYQPEKPVDIYNLLGC 980
              CF+KA K    DNL G++DAL+WG +PSVG+G  FDI+Y  KG++  +P DIY LLG 
Sbjct: 1266 GSCFIKAGKRAVADNLHGSLDALAWGKIPSVGSGGHFDILYSAKGHELARPEDIYKLLGS 1325

Query: 979  HDNSHQQVTK-KSPDRKYELSGKSLAQQLFAFRLTLSR------LDIKTLLRHFLSLEDI 821
              + H+Q  K K P   Y+ + K  AQ ++A   + S+         K++LR FLSL DI
Sbjct: 1326 QTSCHEQNLKVKVPITCYQTTTKCGAQLVYANGDSASKGCKSLEKISKSVLRSFLSLNDI 1385

Query: 820  QRLSQTLRNLLNKYEINCQLSDVDKAVVMTALCFHPRGNEKIGTGALEIKVGYHPKYKNS 641
            Q+LS+ L+ +L KY IN QLS++DK  +M AL FHPR +EKIG GA  IKV YH KY N+
Sbjct: 1386 QKLSRRLKFILQKYPINHQLSEIDKTTLMMALYFHPRRDEKIGPGAQNIKVRYHSKYHNT 1445

Query: 640  RCFLLVRTDGTTEDFSYHKCVHHALQLIAPHRAKTYESKWLLSNKT------EGLMANAP 479
            RCF LVRTDGT EDFSYHKCVH AL++I P RA++Y+S+WL S  +      + +MA   
Sbjct: 1446 RCFSLVRTDGTEEDFSYHKCVHGALEIIDPRRARSYQSRWLTSEVSSTFHPFDDVMARKR 1505

Query: 478  PS 473
            PS
Sbjct: 1506 PS 1507


>emb|CBI34757.3| unnamed protein product [Vitis vinifera]
          Length = 1359

 Score =  309 bits (792), Expect = 9e-82
 Identities = 155/281 (55%), Positives = 200/281 (71%), Gaps = 7/281 (2%)
 Frame = -1

Query: 1339 SLNTAMGDIGKTFRPEHSVLTADCLSTAGEFVALNAKGLAQQRKATSVSSPFVQACFSNP 1160
            SL +A+ DIGKT  PEH +L A CLS  GEFV LNAKG+A+Q++ TS+SSPF+Q CFS+P
Sbjct: 1064 SLKSAISDIGKTVLPEHLLLVASCLSATGEFVGLNAKGMARQKELTSISSPFMQGCFSSP 1123

Query: 1159 ADCFVKAAKTGTVDNLQGTVDALSWGMVPSVGTGSQFDIIYHGKGYQPEKPVDIYNLLGC 980
              CF+KA K    DNL G++DAL+WG +PSVG+G  FDI+Y  KG++  +P DIY LLG 
Sbjct: 1124 GSCFIKAGKRAVADNLHGSLDALAWGKIPSVGSGGHFDILYSAKGHELARPEDIYKLLGS 1183

Query: 979  HDNSHQQVTK-KSPDRKYELSGKSLAQQLFAFRLTLSR------LDIKTLLRHFLSLEDI 821
              + H+Q  K K P   Y+ + K  AQ ++A   + S+         K++LR FLSL DI
Sbjct: 1184 QTSCHEQNLKVKVPITCYQTTTKCGAQLVYANGDSASKGCKSLEKISKSVLRSFLSLNDI 1243

Query: 820  QRLSQTLRNLLNKYEINCQLSDVDKAVVMTALCFHPRGNEKIGTGALEIKVGYHPKYKNS 641
            Q+LS+ L+ +L KY IN QLS++DK  +M AL FHPR +EKIG GA  IKV YH KY N+
Sbjct: 1244 QKLSRRLKFILQKYPINHQLSEIDKTTLMMALYFHPRRDEKIGPGAQNIKVRYHSKYHNT 1303

Query: 640  RCFLLVRTDGTTEDFSYHKCVHHALQLIAPHRAKTYESKWL 518
            RCF LVRTDGT EDFSYHKCVH AL++I P RA++Y+S+WL
Sbjct: 1304 RCFSLVRTDGTEEDFSYHKCVHGALEIIDPRRARSYQSRWL 1344


>ref|XP_004147993.1| PREDICTED: DNA-directed RNA polymerase D subunit 1-like [Cucumis
            sativus] gi|449494342|ref|XP_004159519.1| PREDICTED: LOW
            QUALITY PROTEIN: DNA-directed RNA polymerase D subunit
            1-like [Cucumis sativus]
          Length = 1469

 Score =  301 bits (772), Expect = 2e-79
 Identities = 153/280 (54%), Positives = 199/280 (71%), Gaps = 6/280 (2%)
 Frame = -1

Query: 1339 SLNTAMGDIGKTFRPEHSVLTADCLSTAGEFVALNAKGLAQQRKATSVSSPFVQACFSNP 1160
            SL +A  D+GKT R EH +L ++ LS  GEFV LN KGL  QR+   V +PF+QACFS+P
Sbjct: 1185 SLESATLDVGKTIRLEHLLLVSNSLSATGEFVGLNVKGLTHQREHALVKTPFMQACFSSP 1244

Query: 1159 ADCFVKAAKTGTVDNLQGTVDALSWGMVPSVGTGSQFDIIYHGKGYQPEKPVDIYNLLGC 980
              C +KAAK G  DNL G++DAL+WG +PS+GTG QFDI+Y GKG++  KPVD+YNLLG 
Sbjct: 1245 GACMIKAAKAGIKDNLSGSLDALAWGRMPSLGTGGQFDILYSGKGHELNKPVDVYNLLGG 1304

Query: 979  HDNSHQQVTKKSPDRKYELSGKSLAQQLF----AFRLTLSRLD--IKTLLRHFLSLEDIQ 818
                 +Q TK     K  +S K  AQ +     +    L RLD   K++LR FL+L DIQ
Sbjct: 1305 QSTCEKQNTKIESLDKNTISEKYSAQLMLKNGGSTIKGLKRLDSVSKSILRKFLTLNDIQ 1364

Query: 817  RLSQTLRNLLNKYEINCQLSDVDKAVVMTALCFHPRGNEKIGTGALEIKVGYHPKYKNSR 638
            +LS  LR +L+KY +N +L++VDK+ +M AL FHP  +EKIG GA +IKVG H KY+N+R
Sbjct: 1365 KLSFALRTILHKYSLNERLNEVDKSTLMMALYFHPHRDEKIGVGAQDIKVGSHSKYQNTR 1424

Query: 637  CFLLVRTDGTTEDFSYHKCVHHALQLIAPHRAKTYESKWL 518
            CF+L+R+DGTTEDFSYHKCV  AL++IAPHR K Y+SKW+
Sbjct: 1425 CFVLIRSDGTTEDFSYHKCVLGALEIIAPHRVKGYQSKWM 1464


>ref|XP_002298071.1| RNA polymerase IV subunit [Populus trichocarpa]
            gi|222845329|gb|EEE82876.1| RNA polymerase IV subunit
            [Populus trichocarpa]
          Length = 1517

 Score =  301 bits (771), Expect = 3e-79
 Identities = 156/283 (55%), Positives = 203/283 (71%), Gaps = 7/283 (2%)
 Frame = -1

Query: 1339 SLNTAMGDIGKTFRPEHSVLTADCLSTAGEFVALNAKGLAQQRKATSVSSPFVQACFSNP 1160
            +L +AM D+GKT  PEH +L A+CLS  GEFV LNAKGL +QR+  SVS+PFVQACFSNP
Sbjct: 1219 NLQSAMSDVGKTVLPEHLLLVANCLSVTGEFVGLNAKGLKRQREHASVSTPFVQACFSNP 1278

Query: 1159 ADCFVKAAKTGTVDNLQGTVDALSWGMVPSVGTGSQFDIIYHGKGYQPEKPVDIYNLLGC 980
             DCF++AAK G VD+LQG++DAL+WG VP++GTG QFDI+Y GKG +  KPVD+YNLLG 
Sbjct: 1279 GDCFIRAAKAGVVDDLQGSIDALAWGKVPAIGTG-QFDIVYSGKGLEFSKPVDVYNLLGS 1337

Query: 979  HDNSHQQVTKKSP-DRKYELSGKSLAQQLFAFR------LTLSRLDIKTLLRHFLSLEDI 821
               S +Q T+    D +   S K  AQ L  F         +     ++ LR  L+ +DI
Sbjct: 1338 QMISTEQNTEFGVLDAQIYKSDKCGAQFLHKFGGCGPKGFKVKEGIPRSFLRRLLTYDDI 1397

Query: 820  QRLSQTLRNLLNKYEINCQLSDVDKAVVMTALCFHPRGNEKIGTGALEIKVGYHPKYKNS 641
            QR+S T+R +LNKY ++ QL++ DK+V+M  L FHPR +EKIG GA +IKV  HP+Y+++
Sbjct: 1398 QRMSYTVRKILNKYSVDQQLNESDKSVLMMTLYFHPRRDEKIGIGAKDIKVINHPEYQDT 1457

Query: 640  RCFLLVRTDGTTEDFSYHKCVHHALQLIAPHRAKTYESKWLLS 512
            RCF LVRTDGT EDFSY KC+H+AL++IAP RAK Y  K+L S
Sbjct: 1458 RCFSLVRTDGTIEDFSYRKCLHNALEIIAPQRAKRYCEKYLTS 1500


>gb|AAY89360.1| RNA polymerase IV largest subunit [Solanum lycopersicum]
          Length = 1138

 Score =  268 bits (685), Expect = 2e-69
 Identities = 143/285 (50%), Positives = 191/285 (67%), Gaps = 12/285 (4%)
 Frame = -1

Query: 1336 LNTAMGDIGKTFRPEHSVLTADCLSTAGEFVALNAKGLAQQRKATSVSSPFVQACFSNPA 1157
            L++A+ + GK   PEH VL AD L+T GEFV L+AKGL  QRKA  V SPF+QACF+NP 
Sbjct: 858  LHSAVSETGKKILPEHLVLAADSLTTTGEFVPLSAKGLTLQRKAAGVVSPFMQACFTNPG 917

Query: 1156 DCFVKAAKTGTVDNLQGTVDALSWGMVPSVGTGSQFDIIYHGKGYQPEKPVDIYNLLGCH 977
            D FV+AAK G  D+LQG++++L+WG  PS+GTGS FDI+Y GKGY+  + +++Y LL   
Sbjct: 918  DSFVRAAKMGLSDDLQGSLESLAWGKTPSIGTGSSFDIMYSGKGYELAEQINVYTLL--- 974

Query: 976  DNSHQQVTKKSPDRKYELSGKSLAQQLFAFRLTLSRLD-----------IKTLLRHFLSL 830
                  VT  +P+ K  L GK       +    L RLD             T LR + S 
Sbjct: 975  ---RNLVTVDTPNVKVTL-GKDGGMDGMSLVRRLDRLDDLDKKSCKSELSFTKLRSYFSF 1030

Query: 829  EDIQRLSQTLRNLLNKYEINCQLSDVDKAVVMTALCFHPRGNEKIGTGA-LEIKVGYHPK 653
             DI++LSQ+L+ +L+KY+I  +L++ DK + M AL FHPR NEKIG GA  EIK+GYH +
Sbjct: 1031 NDIKKLSQSLKQMLSKYDIGRELNEADKCLAMMALQFHPRRNEKIGKGAPKEIKIGYHQE 1090

Query: 652  YKNSRCFLLVRTDGTTEDFSYHKCVHHALQLIAPHRAKTYESKWL 518
            ++ SRCF++VR+D T EDFSY KC+ HAL+LIAP +AKT  S+WL
Sbjct: 1091 FEGSRCFMVVRSDDTVEDFSYRKCMQHALELIAPQKAKT--SRWL 1133