BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cephaelis21_contig00029560
         (233 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P10978.1|POLX_TOBAC RecName: Full=Retrovirus-related Pol poly...    58   1e-10
emb|CAN72567.1| hypothetical protein VITISV_044177 [Vitis vinifera]    58   1e-09
gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|1337118...    54   1e-08
emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis]         52   3e-08
gb|AAK29467.1| polyprotein-like [Solanum chilense]                     53   3e-08

>sp|P10978.1|POLX_TOBAC RecName: Full=Retrovirus-related Pol polyprotein from transposon
           TNT 1-94; Includes: RecName: Full=Protease; Includes:
           RecName: Full=Reverse transcriptase; Includes: RecName:
           Full=Endonuclease gi|20045|emb|CAA32025.1| unnamed
           protein product [Nicotiana tabacum]
          Length = 1328

 Score = 58.2 bits (139), Expect(2) = 1e-10
 Identities = 25/51 (49%), Positives = 39/51 (76%)
 Frame = +3

Query: 3   LDKRARSGIILNLSDEVLQEVAGESTAKGMWDKLKAMYMKKMVENRLYLKQ 155
           LD+RA S I L+LSD+V+  +  E TA+G+W +L+++YM K + N+LYLK+
Sbjct: 55  LDERAASAIRLHLSDDVVNNIIDEDTARGIWTRLESLYMSKTLTNKLYLKK 105



 Score = 32.7 bits (73), Expect(2) = 1e-10
 Identities = 15/30 (50%), Positives = 21/30 (70%)
 Frame = +2

Query: 143 LFETMYMLRMTEGTSILSHLDKFDSLIMDL 232
           L + +Y L M+EGT+ LSHL+ F+ LI  L
Sbjct: 103 LKKQLYALHMSEGTNFLSHLNVFNGLITQL 132


>emb|CAN72567.1| hypothetical protein VITISV_044177 [Vitis vinifera]
          Length = 950

 Score = 58.2 bits (139), Expect(2) = 1e-09
 Identities = 27/48 (56%), Positives = 37/48 (77%)
 Frame = +3

Query: 12  RARSGIILNLSDEVLQEVAGESTAKGMWDKLKAMYMKKMVENRLYLKQ 155
           RA S I+L+L+DEVL+EVA E+TA G+W K ++ Y KK + NRLY K+
Sbjct: 58  RAHSAILLSLADEVLREVADETTAVGLWRKFESKYQKKSLTNRLYQKR 105



 Score = 28.9 bits (63), Expect(2) = 1e-09
 Identities = 10/26 (38%), Positives = 19/26 (73%)
 Frame = +2

Query: 155 MYMLRMTEGTSILSHLDKFDSLIMDL 232
           ++ L+M+EG  +  HL+ F+ +I+DL
Sbjct: 107 LHTLKMSEGMQVRDHLNNFNRIILDL 132


>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|133711819|gb|ABO36636.1|
           copia LTR rider [Solanum lycopersicum]
          Length = 1307

 Score = 54.3 bits (129), Expect(2) = 1e-08
 Identities = 25/51 (49%), Positives = 39/51 (76%)
 Frame = +3

Query: 3   LDKRARSGIILNLSDEVLQEVAGESTAKGMWDKLKAMYMKKMVENRLYLKQ 155
           L+++A S I+L L+D+V+ EV+ E TA G+W KL+++YM K + N+L LKQ
Sbjct: 52  LEEKAHSTIMLCLADDVITEVSDEETAAGLWLKLESLYMTKSLTNKLLLKQ 102



 Score = 29.6 bits (65), Expect(2) = 1e-08
 Identities = 11/30 (36%), Positives = 22/30 (73%)
 Frame = +2

Query: 143 LFETMYMLRMTEGTSILSHLDKFDSLIMDL 232
           L + ++ LRM EGT +  HL++ ++L+++L
Sbjct: 100 LKQRLFGLRMAEGTQLREHLEQLNTLLLEL 129


>emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis]
          Length = 1334

 Score = 52.4 bits (124), Expect(2) = 3e-08
 Identities = 22/51 (43%), Positives = 38/51 (74%)
 Frame = +3

Query: 3   LDKRARSGIILNLSDEVLQEVAGESTAKGMWDKLKAMYMKKMVENRLYLKQ 155
           +  RA S +IL+L D +L+E++ E TA G+W+K++ + MKK + +RL+LK+
Sbjct: 57  IQNRAHSTLILSLGDSILREISEEKTALGIWNKVETLCMKKSLAHRLFLKK 107



 Score = 30.0 bits (66), Expect(2) = 3e-08
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +2

Query: 143 LFETMYMLRMTEGTSILSHLDKFDSLIMDL 232
           L + +Y   M EG +I  H+D F+ +I+DL
Sbjct: 105 LKKRLYTFSMREGVTIQDHIDTFNKIILDL 134


>gb|AAK29467.1| polyprotein-like [Solanum chilense]
          Length = 1328

 Score = 52.8 bits (125), Expect(2) = 3e-08
 Identities = 23/51 (45%), Positives = 37/51 (72%)
 Frame = +3

Query: 3   LDKRARSGIILNLSDEVLQEVAGESTAKGMWDKLKAMYMKKMVENRLYLKQ 155
           LD++A S I L+L+D+V+  +  E +A G+W KL+ +YM K + N+LYLK+
Sbjct: 56  LDEKAASAIRLHLTDDVVNNIVDEESACGIWTKLENLYMSKTLTNKLYLKK 106



 Score = 29.6 bits (65), Expect(2) = 3e-08
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = +2

Query: 143 LFETMYMLRMTEGTSILSHLDKFDSLIMDL 232
           L + +Y L M EGT+ LSHL+  + LI  L
Sbjct: 104 LKKQLYTLHMDEGTNFLSHLNVLNGLITQL 133