BLASTX nr result
ID: Cephaelis21_contig00026217
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cephaelis21_contig00026217
(1948 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AFP55574.1| non-ltr retroelement reverse transcriptase [Rosa ... 335 9e-94
gb|AAF97969.1|AC000103_19 F21J9.30 [Arabidopsis thaliana] 337 5e-90
gb|AAG03119.1|AC004133_13 F5A9.24 [Arabidopsis thaliana] 337 5e-90
pir||S65812 RNA-directed DNA polymerase (EC 2.7.7.49) (clone DW1... 336 2e-89
gb|AAC33961.1| contains similarity to reverse trancriptase (Pfam... 324 6e-89
>gb|AFP55574.1| non-ltr retroelement reverse transcriptase [Rosa rugosa]
Length = 1656
Score = 335 bits (860), Expect(2) = 9e-94
Identities = 183/527 (34%), Positives = 280/527 (53%)
Frame = -3
Query: 1607 WILGGDFNDIRCPEEKRGGRPCTPASFWNFNDFIDQMDMEKIPFLGKN*TWANNWEDEGY 1428
W++ GDFN++ P EK GG P P F DF++ + + F G +W +
Sbjct: 737 WLVLGDFNEVLDPSEKWGGGPPLPWRIKLFRDFLNNGHLRDLHFKGPGFSWFAMRHGRVF 796
Query: 1427 IEVRLDKFFGASTWLVTHSTAVITHVRKQASDHSLLVLDTEPTRKRIKQRFCFDQR*ISK 1248
I+ RLD+ G W + I H+ K SDH L+LD+ P + F F+Q +
Sbjct: 797 IKERLDRALGNIAWSSSQPNTQILHLPKIGSDHRPLLLDSNPKMLNKTRLFRFEQMWTTH 856
Query: 1247 QGLEEVIKRAWEADFVGSPMFRLAAKIKACRLGILAWNRKQNFNAALQIQNLKDEMEQLA 1068
+ +VI+R+W F GS M + +C + W++++ N ++Q+ +L ++E+L
Sbjct: 857 EEYSDVIQRSWPPAFGGSAMRSWNRNLLSCGKALKMWSKEKFSNPSVQVADLLSDIEKLH 916
Query: 1067 DLGGQRNWETWHNLQGQLNQAYQAEEKFWRQKLRVQWLKEGDRNTHFFHACTLQRRKSNR 888
+ L Q+ + + +E +W Q+ RV WLK GD+N+ FFH T+QRR+ N+
Sbjct: 917 QSNPPDAHHQINILTDQVTKLWTQDEMYWHQRSRVNWLKLGDQNSSFFHQTTIQRRQYNK 976
Query: 887 LERLEKADGTWTKDEDELLDEIXXXXXXXXXXXXSWGWEDALIDFPSTITESMNSSLIRP 708
+ RL+ G W E ++ + WE+ L + +T MN L P
Sbjct: 977 IVRLKDDHGNWLDSEADVALQFLDYFTALYQSNGPQQWEEVLDFVDTAVTAEMNKILSSP 1036
Query: 707 VEDGEIKEAVFSMNPNKAPGMDGMSPCFFQSFWHIVQFDVCKAVRXXXXXXXXXXXFNHT 528
V E+K+AVF + KAPG DG S F+Q+ W VQ + ++ N T
Sbjct: 1037 VSLLEVKKAVFDLGATKAPGPDGFSGIFYQNQWEWVQSIIHESALQHQTSSSLLQVMNRT 1096
Query: 527 LISFIPKIQLPTKISQFRPISLCNVIYKIISKILTERLKLCLPFCISENQSAFLEGRKIL 348
++ IPK++ PT S +RPI+LCN YKI++KI+ RL+ + IS+NQSAF+ R+I
Sbjct: 1097 HLALIPKVKAPTHPSHYRPIALCNFSYKILTKIIASRLQPFMSELISDNQSAFVSNRQIQ 1156
Query: 347 DNVVIAHEYIHHLNKMRRGRKKFVALKLDMAKAFDRVEWRFLYFIMIRMGFDLQFVS*IS 168
DNV+IAHE HHL R LKLDM KA+DRVEW FL ++ +MGF ++ +
Sbjct: 1157 DNVIIAHEIYHHLKLTRSCNNGAFGLKLDMNKAYDRVEWNFLEAVLRKMGFVDSWIGLVM 1216
Query: 167 KCLQSASFSFNINGEAK*YIRPQRGIKQGDPLSPYLFLICSEALSHL 27
C+ ++S S ING+ P RG++QGDPLSP+LFL ++ LS +
Sbjct: 1217 SCVTTSSLSVLINGKPGPSFLPSRGLRQGDPLSPFLFLFVNDVLSRM 1263
Score = 37.0 bits (84), Expect(2) = 9e-94
Identities = 25/107 (23%), Positives = 50/107 (46%)
Frame = -1
Query: 1948 LKESLRLFKPEITFLCETKRKSGFVKTVCKKLGFSSRFSIVDPTGMSGGLLLG*DESVTT 1769
L+ + PEI FL ET+++ G +K + L F+ +VDP GL L ++V
Sbjct: 624 LRRICKKHNPEILFLMETRQQEGIIKEWKRNLKFTDH-HVVDPIATGRGLALFWGDAVQV 682
Query: 1768 YQIITTSFSIEVEFESPSSAGRMWAVFIYASTNEKVRLAQWKELLSK 1628
+ ++ ++ S A ++Y + ++ + A W+ + S+
Sbjct: 683 SILDSSPNYVDTVVSFLSDAFVCKITWMYGNPHDNEKRAFWRLMYSR 729
>gb|AAF97969.1|AC000103_19 F21J9.30 [Arabidopsis thaliana]
Length = 1270
Score = 337 bits (865), Expect = 5e-90
Identities = 192/532 (36%), Positives = 296/532 (55%), Gaps = 3/532 (0%)
Frame = -3
Query: 1613 NNWILGGDFNDIRCPEEKRGGRPCTPASFWNFNDFIDQMDMEKIPFLGKN*TWANNWEDE 1434
+ W + GDFNDI EK GG + FN+ I D+ ++P G TWA D
Sbjct: 92 DKWCMFGDFNDILHNGEKNGGPRRSDLDCKAFNEMIKGCDLVEMPAHGNGFTWAGRRGDH 151
Query: 1433 GYIEVRLDKFFGASTWLVTHSTAVITHVRKQASDHSLLVLDTEPTRKRIKQRFCFDQR*I 1254
+I+ RLD+ FG W + T + + SDH +++ ++ + +F FD+R +
Sbjct: 152 -WIQCRLDRAFGNKEWFCFFPVSNQTFLDFRGSDHRPVLIKLMSSQDSYRGQFRFDKRFL 210
Query: 1253 SKQGLEEVIKRAWEADFVGSPMFRLAAKIKACRLGILAWNRKQNFNAALQIQNLKDEMEQ 1074
K+ ++E I R W G+ + +A +++ACR + +W ++ N N+ +I L+ +E+
Sbjct: 211 FKEDVKEAIIRTWSRGKHGTNI-SVADRLRACRKSLSSWKKQNNLNSLDKINQLEAALEK 269
Query: 1073 LADLGGQRNWETWHN---LQGQLNQAYQAEEKFWRQKLRVQWLKEGDRNTHFFHACTLQR 903
L W + L+ L +AY+ EE +W+QK R +WL+ G+RN+ +FHA Q
Sbjct: 270 EQSLV----WPIFQRVSVLKKDLAKAYREEEAYWKQKSRQKWLRSGNRNSKYFHAAVKQN 325
Query: 902 RKSNRLERLEKADGTWTKDEDELLDEIXXXXXXXXXXXXSWGWEDALIDFPSTITESMNS 723
R+ R+E+L+ +G E + G+ D ++E MN
Sbjct: 326 RQRKRIEKLKDVNGNMQTSEAAKGEVAAAYFGNLFKSSNPSGFTDWFSGLVPRVSEVMNE 385
Query: 722 SLIRPVEDGEIKEAVFSMNPNKAPGMDGMSPCFFQSFWHIVQFDVCKAVRXXXXXXXXXX 543
SL+ V EIKEAVFS+ P APG DGMS FFQ +W V V V+
Sbjct: 386 SLVGEVSAQEIKEAVFSIKPASAPGPDGMSALFFQHYWSTVGNQVTSEVKKFFADGIMPA 445
Query: 542 XFNHTLISFIPKIQLPTKISQFRPISLCNVIYKIISKILTERLKLCLPFCISENQSAFLE 363
+N+T + IPK Q PT++ RPISLC+V+YKIISKI+ +RL+ LP +S+ QSAF+
Sbjct: 446 EWNYTHLCLIPKTQHPTEMVDLRPISLCSVLYKIISKIMAKRLQPWLPEIVSDTQSAFVS 505
Query: 362 GRKILDNVVIAHEYIHHLNKMRRGRKKFVALKLDMAKAFDRVEWRFLYFIMIRMGFDLQF 183
R I DN+++AHE +H L R +F+A+K DM+KA+DRVEW +L +++ +GF L++
Sbjct: 506 ERLITDNILVAHELVHSLKVHPRISSEFMAVKSDMSKAYDRVEWSYLRSLLLSLGFHLKW 565
Query: 182 VS*ISKCLQSASFSFNINGEAK*YIRPQRGIKQGDPLSPYLFLICSEALSHL 27
V+ I C+ S ++S IN I QRG++QGDPLSP+LF++C+E L+HL
Sbjct: 566 VNWIMVCVSSVTYSVLINDCPFGLIILQRGLRQGDPLSPFLFVLCTEGLTHL 617
>gb|AAG03119.1|AC004133_13 F5A9.24 [Arabidopsis thaliana]
Length = 1254
Score = 337 bits (865), Expect = 5e-90
Identities = 192/532 (36%), Positives = 296/532 (55%), Gaps = 3/532 (0%)
Frame = -3
Query: 1613 NNWILGGDFNDIRCPEEKRGGRPCTPASFWNFNDFIDQMDMEKIPFLGKN*TWANNWEDE 1434
+ W + GDFNDI EK GG + FN+ I D+ ++P G TWA D
Sbjct: 95 DKWCMFGDFNDILHNGEKNGGPRRSDLDCKAFNEMIKGCDLVEMPAHGNGFTWAGRRGDH 154
Query: 1433 GYIEVRLDKFFGASTWLVTHSTAVITHVRKQASDHSLLVLDTEPTRKRIKQRFCFDQR*I 1254
+I+ RLD+ FG W + T + + SDH +++ ++ + +F FD+R +
Sbjct: 155 -WIQCRLDRAFGNKEWFCFFPVSNQTFLDFRGSDHRPVLIKLMSSQDSYRGQFRFDKRFL 213
Query: 1253 SKQGLEEVIKRAWEADFVGSPMFRLAAKIKACRLGILAWNRKQNFNAALQIQNLKDEMEQ 1074
K+ ++E I R W G+ + +A +++ACR + +W ++ N N+ +I L+ +E+
Sbjct: 214 FKEDVKEAIIRTWSRGKHGTNI-SVADRLRACRKSLSSWKKQNNLNSLDKINQLEAALEK 272
Query: 1073 LADLGGQRNWETWHN---LQGQLNQAYQAEEKFWRQKLRVQWLKEGDRNTHFFHACTLQR 903
L W + L+ L +AY+ EE +W+QK R +WL+ G+RN+ +FHA Q
Sbjct: 273 EQSLV----WPIFQRVSVLKKDLAKAYREEEAYWKQKSRQKWLRSGNRNSKYFHAAVKQN 328
Query: 902 RKSNRLERLEKADGTWTKDEDELLDEIXXXXXXXXXXXXSWGWEDALIDFPSTITESMNS 723
R+ R+E+L+ +G E + G+ D ++E MN
Sbjct: 329 RQRKRIEKLKDVNGNMQTSEAAKGEVAAAYFGNLFKSSNPSGFTDWFSGLVPRVSEVMNE 388
Query: 722 SLIRPVEDGEIKEAVFSMNPNKAPGMDGMSPCFFQSFWHIVQFDVCKAVRXXXXXXXXXX 543
SL+ V EIKEAVFS+ P APG DGMS FFQ +W V V V+
Sbjct: 389 SLVGEVSAQEIKEAVFSIKPASAPGPDGMSALFFQHYWSTVGNQVTSEVKKFFADGIMPA 448
Query: 542 XFNHTLISFIPKIQLPTKISQFRPISLCNVIYKIISKILTERLKLCLPFCISENQSAFLE 363
+N+T + IPK Q PT++ RPISLC+V+YKIISKI+ +RL+ LP +S+ QSAF+
Sbjct: 449 EWNYTHLCLIPKTQHPTEMVDLRPISLCSVLYKIISKIMAKRLQPWLPEIVSDTQSAFVS 508
Query: 362 GRKILDNVVIAHEYIHHLNKMRRGRKKFVALKLDMAKAFDRVEWRFLYFIMIRMGFDLQF 183
R I DN+++AHE +H L R +F+A+K DM+KA+DRVEW +L +++ +GF L++
Sbjct: 509 ERLITDNILVAHELVHSLKVHPRISSEFMAVKSDMSKAYDRVEWSYLRSLLLSLGFHLKW 568
Query: 182 VS*ISKCLQSASFSFNINGEAK*YIRPQRGIKQGDPLSPYLFLICSEALSHL 27
V+ I C+ S ++S IN I QRG++QGDPLSP+LF++C+E L+HL
Sbjct: 569 VNWIMVCVSSVTYSVLINDCPFGLIILQRGLRQGDPLSPFLFVLCTEGLTHL 620
>pir||S65812 RNA-directed DNA polymerase (EC 2.7.7.49) (clone DW15) - Arabidopsis
thaliana retrotransposon Ta11-1 gi|976278|gb|AAA75254.1|
reverse transcriptase [Arabidopsis thaliana]
Length = 1333
Score = 336 bits (861), Expect = 2e-89
Identities = 190/527 (36%), Positives = 288/527 (54%)
Frame = -3
Query: 1607 WILGGDFNDIRCPEEKRGGRPCTPASFWNFNDFIDQMDMEKIPFLGKN*TWANNWEDEGY 1428
W + GDFN I EKRGG +SF F D +D DM ++P +G TW +E +
Sbjct: 133 WCMLGDFNPILHNGEKRGGPRRGDSSFLPFTDMLDSCDMLELPSIGNPFTWGGK-TNEMW 191
Query: 1427 IEVRLDKFFGASTWLVTHSTAVITHVRKQASDHSLLVLDTEPTRKRIKQRFCFDQR*ISK 1248
I+ RLD+ FG W + + K+ SDH +++ T++ + F FD+R ++
Sbjct: 192 IQSRLDRCFGNKNWFRFFPISNQEFLDKRGSDHRPVLVRLTKTKEEYRGNFRFDKRLFNQ 251
Query: 1247 QGLEEVIKRAWEADFVGSPMFRLAAKIKACRLGILAWNRKQNFNAALQIQNLKDEMEQLA 1068
++E I +AW + L K+K CR + W ++ N N++ +I + +E L
Sbjct: 252 PNVKETIVQAWNGSQRNENLLVLD-KLKHCRSALSRWKKENNINSSTRITQARAALE-LE 309
Query: 1067 DLGGQRNWETWHNLQGQLNQAYQAEEKFWRQKLRVQWLKEGDRNTHFFHACTLQRRKSNR 888
G + +L+ L +A EE FW QK R +W+ GD+NT FFHA R
Sbjct: 310 QSSGFPRADLVFSLKNDLCKANHDEEVFWSQKSRAKWMHSGDKNTSFFHASVKDNRGKQH 369
Query: 887 LERLEKADGTWTKDEDELLDEIXXXXXXXXXXXXSWGWEDALIDFPSTITESMNSSLIRP 708
+++L +G + KDE + D D+ +TESMN++LI
Sbjct: 370 IDQLCDVNGLFHKDEMNKGAIAEAYFSDLFKSTDPSSFVDLFEDYQPRVTESMNNTLIAA 429
Query: 707 VEDGEIKEAVFSMNPNKAPGMDGMSPCFFQSFWHIVQFDVCKAVRXXXXXXXXXXXFNHT 528
V EI+EAVF++ + APG+DG + FFQ +W I+ V K ++ +N T
Sbjct: 430 VSKNEIREAVFAIRSSSAPGVDGFTGFFFQKYWSIICLQVTKEIQNFFLLGYFPKSWNFT 489
Query: 527 LISFIPKIQLPTKISQFRPISLCNVIYKIISKILTERLKLCLPFCISENQSAFLEGRKIL 348
+ +PK + P K++ RPISLC+V+YKIISKI+ RL+ LP +S NQSAF+ R I
Sbjct: 490 HLCLLPKKKKPDKMTDLRPISLCSVLYKIISKIMVRRLQPFLPDLVSPNQSAFVAERLIF 549
Query: 347 DNVVIAHEYIHHLNKMRRGRKKFVALKLDMAKAFDRVEWRFLYFIMIRMGFDLQFVS*IS 168
DN++IAHE +H L + K F+A+K +M+KAFDRVEW ++ ++ +GF ++V I
Sbjct: 550 DNILIAHEVVHGLRTHKSVSKGFIAIKSNMSKAFDRVEWNYVRALLDALGFHQKWVGWIM 609
Query: 167 KCLQSASFSFNINGEAK*YIRPQRGIKQGDPLSPYLFLICSEALSHL 27
+ S S+S IN +A I P RG++QGDPLSP+LF++CSE L+HL
Sbjct: 610 FMISSVSYSVLINDKAFGNIVPSRGLRQGDPLSPFLFVLCSEGLTHL 656
>gb|AAC33961.1| contains similarity to reverse trancriptase (Pfam: rvt.hmm, score:
42.57) [Arabidopsis thaliana]
Length = 1662
Score = 324 bits (831), Expect(2) = 6e-89
Identities = 190/530 (35%), Positives = 282/530 (53%), Gaps = 3/530 (0%)
Frame = -3
Query: 1607 WILGGDFNDIRCPEEKRGGRPCTPASFWNFNDFIDQMDMEKIPFLGKN*TWANNWEDEGY 1428
WIL GDFN+I EK GG +F F + + D++ I +G +W
Sbjct: 512 WILIGDFNEILSNNEKIGGPQRDEWTFRGFRNMVSTCDLKDIRSIGDRFSWVGERHSHT- 570
Query: 1427 IEVRLDKFFGASTWLVTHSTAVITHVRKQASDHSLLVLDTEPTRKRIKQRFCFDQR*ISK 1248
++ LD+ F S A + + SDH L L E T R + F FD+R +
Sbjct: 571 VKCCLDRAFINSEGAFLFPFAELEFLEFTGSDHKPLFLSLEKTETRKMRPFRFDKRLLEV 630
Query: 1247 QGLEEVIKRAWEADFVGSPMFRLAAKIKACRLGILAWNRKQNFNAALQIQNLKDEMEQLA 1068
+ +K W G L +++ CR + K N N+ ++I L+ +++
Sbjct: 631 PHFKTYVKAGWNKAINGQRK-HLPDQVRTCRQAMAKLKHKSNLNSRIRINQLQAALDKAM 689
Query: 1067 DLGGQRNWETWHNLQGQLNQAYQAEEKFWRQKLRVQWLKEGDRNTHFFHACTLQRRKSNR 888
+ T ++Q +L AY+ EE++W+QK R QW+KEGDRNT FFHACT R NR
Sbjct: 690 SSVNRTERRTISHIQRELTVAYRDEERYWQQKSRNQWMKEGDRNTEFFHACTKTRFSVNR 749
Query: 887 LERLEKADGTWTKDEDELLDEIXXXXXXXXXXXXSWGWEDALIDFPS---TITESMNSSL 717
L ++ +G + + E+ G ++IDF +TE +N L
Sbjct: 750 LVTIKDEEGMIYRGDKEIGVHAQEFFTKVYESN---GRPVSIIDFAGFKPIVTEQINDDL 806
Query: 716 IRPVEDGEIKEAVFSMNPNKAPGMDGMSPCFFQSFWHIVQFDVCKAVRXXXXXXXXXXXF 537
+ + D EI A+ + +KAPG DG++ F++S W IV DV K V+
Sbjct: 807 TKDLSDLEIYNAICHIGDDKAPGPDGLTARFYKSCWEIVGPDVIKEVKIFFRTSYMKQSI 866
Query: 536 NHTLISFIPKIQLPTKISQFRPISLCNVIYKIISKILTERLKLCLPFCISENQSAFLEGR 357
NHT I IPKI P +S +RPI+LCNV+YKIISK L ERLK L +S++Q+AF+ GR
Sbjct: 867 NHTNICMIPKITNPETLSDYRPIALCNVLYKIISKCLVERLKGHLDAIVSDSQAAFIPGR 926
Query: 356 KILDNVVIAHEYIHHLNKMRRGRKKFVALKLDMAKAFDRVEWRFLYFIMIRMGFDLQFVS 177
+ DNV+IAHE +H L +R + ++A+K D++KA+DRVEW FL M GF ++
Sbjct: 927 LVNDNVMIAHEMMHSLKTRKRVSQSYMAVKTDVSKAYDRVEWNFLETTMRLFGFSETWIK 986
Query: 176 *ISKCLQSASFSFNINGEAK*YIRPQRGIKQGDPLSPYLFLICSEALSHL 27
I ++S ++S +NG I+PQRGI+QGDPLSPYLF++C++ L+HL
Sbjct: 987 WIMGAVKSVNYSVLVNGIPHGTIQPQRGIRQGDPLSPYLFILCADILNHL 1036
Score = 32.0 bits (71), Expect(2) = 6e-89
Identities = 29/107 (27%), Positives = 46/107 (42%)
Frame = -1
Query: 1948 LKESLRLFKPEITFLCETKRKSGFVKTVCKKLGFSSRFSIVDPTGMSGGLLLG*DESVTT 1769
L ++FK ++ FL ET K + + LGF + + P G SGGL L +SV
Sbjct: 401 LSNLCKVFKFDVLFLIETLNKCEVISNLASVLGFPNVIT-QPPQGHSGGLALLWKDSVRL 459
Query: 1768 YQIITTSFSIEVEFESPSSAGRMWAVFIYASTNEKVRLAQWKELLSK 1628
+ I+V + + V+ + +E+ L E LSK
Sbjct: 460 SNLYQDDRHIDVHISINNINFYLSRVYGHPCQSERHSLWTHFENLSK 506