BLASTX nr result

ID: Cephaelis21_contig00025104 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cephaelis21_contig00025104
         (240 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004149831.1| PREDICTED: pentatricopeptide repeat-containi...   107   8e-22
gb|AAG29200.1|AC078898_10 hypothetical protein [Arabidopsis thal...   103   1e-20
ref|NP_177865.2| pentatricopeptide repeat-containing protein [Ar...   103   1e-20
ref|XP_002887681.1| binding protein [Arabidopsis lyrata subsp. l...   101   6e-20
ref|XP_002279168.1| PREDICTED: pentatricopeptide repeat-containi...   101   7e-20

>ref|XP_004149831.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g77405-like [Cucumis sativus]
           gi|449518241|ref|XP_004166151.1| PREDICTED:
           pentatricopeptide repeat-containing protein
           At1g77405-like [Cucumis sativus]
          Length = 445

 Score =  107 bits (268), Expect = 8e-22
 Identities = 52/82 (63%), Positives = 62/82 (75%), Gaps = 3/82 (3%)
 Frame = +3

Query: 3   YRDVEKVNLGLRKATEFFYWVESHFGFTHNEATCKEMALVFAKGNSLKSLWGFLKEMSRK 182
           +RD  K  LGL KA EFFYWVE+HFGF H+E TC+EMA V A+GN+L  LW FLKEMSR+
Sbjct: 104 HRDPFKAKLGLNKALEFFYWVETHFGFQHDEITCREMACVLARGNTLMGLWDFLKEMSRR 163

Query: 183 R---IVNTAIVTRVIKVLGEEG 239
               +V TA +T +IKVLGEEG
Sbjct: 164 ENGGLVTTATITCLIKVLGEEG 185


>gb|AAG29200.1|AC078898_10 hypothetical protein [Arabidopsis thaliana]
          Length = 410

 Score =  103 bits (257), Expect = 1e-20
 Identities = 46/83 (55%), Positives = 63/83 (75%), Gaps = 4/83 (4%)
 Frame = +3

Query: 3   YRDVEKVNLGLRKATEFFYWVESHFGFTHNEATCKEMALVFAKGNSLKSLWGFLKEMSR- 179
           Y D +KV++GL+KA EFF+W+E+HFGF HNE TC++MA + AKGN  K LW FL+++SR 
Sbjct: 97  YMDPKKVSIGLQKALEFFFWIETHFGFDHNEITCRDMACLLAKGNDFKGLWDFLRQVSRR 156

Query: 180 ---KRIVNTAIVTRVIKVLGEEG 239
              K +V TA +T ++K LGEEG
Sbjct: 157 ENGKNVVTTASITCLMKCLGEEG 179


>ref|NP_177865.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|122244095|sp|Q1PFC5.1|PP130_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At1g77405 gi|91806103|gb|ABE65780.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
           gi|332197853|gb|AEE35974.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 458

 Score =  103 bits (257), Expect = 1e-20
 Identities = 46/83 (55%), Positives = 63/83 (75%), Gaps = 4/83 (4%)
 Frame = +3

Query: 3   YRDVEKVNLGLRKATEFFYWVESHFGFTHNEATCKEMALVFAKGNSLKSLWGFLKEMSR- 179
           Y D +KV++GL+KA EFF+W+E+HFGF HNE TC++MA + AKGN  K LW FL+++SR 
Sbjct: 97  YMDPKKVSIGLQKALEFFFWIETHFGFDHNEITCRDMACLLAKGNDFKGLWDFLRQVSRR 156

Query: 180 ---KRIVNTAIVTRVIKVLGEEG 239
              K +V TA +T ++K LGEEG
Sbjct: 157 ENGKNVVTTASITCLMKCLGEEG 179


>ref|XP_002887681.1| binding protein [Arabidopsis lyrata subsp. lyrata]
           gi|297333522|gb|EFH63940.1| binding protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 459

 Score =  101 bits (252), Expect = 6e-20
 Identities = 46/83 (55%), Positives = 62/83 (74%), Gaps = 4/83 (4%)
 Frame = +3

Query: 3   YRDVEKVNLGLRKATEFFYWVESHFGFTHNEATCKEMALVFAKGNSLKSLWGFLKEMSR- 179
           Y D +K++LGL+KA EFF+W+E HFGF HNE TC++MA + AKGN  K LW FL+++SR 
Sbjct: 97  YIDPKKISLGLQKALEFFFWIEIHFGFGHNEITCRDMACLLAKGNDFKGLWDFLRQVSRR 156

Query: 180 ---KRIVNTAIVTRVIKVLGEEG 239
              K +V TA +T ++K LGEEG
Sbjct: 157 ENGKNVVTTASITCLMKCLGEEG 179


>ref|XP_002279168.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g77405-like [Vitis vinifera]
          Length = 432

 Score =  101 bits (251), Expect = 7e-20
 Identities = 49/82 (59%), Positives = 60/82 (73%), Gaps = 3/82 (3%)
 Frame = +3

Query: 3   YRDVEKVNLGLRKATEFFYWVESHFGFTHNEATCKEMALVFAKGNSLKSLWGFLKEMSRK 182
           YRD  KV LG+ KA EF+ WVE+ FGF+HNE TC+EM  V A+GN LK LW FL EM+RK
Sbjct: 90  YRDPHKVKLGVEKAMEFYSWVETQFGFSHNEMTCREMGCVLARGNRLKVLWEFLHEMARK 149

Query: 183 ---RIVNTAIVTRVIKVLGEEG 239
               +V TA +T ++KVLGEEG
Sbjct: 150 GGNGVVTTATITCLMKVLGEEG 171


Top