BLASTX nr result
ID: Cephaelis21_contig00025025
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cephaelis21_contig00025025
(366 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002510741.1| U2 snrnp auxiliary factor, small subunit, pu... 95 3e-23
ref|XP_002307825.1| predicted protein [Populus trichocarpa] gi|2... 96 7e-23
dbj|BAJ34257.1| unnamed protein product [Thellungiella halophila] 95 9e-23
ref|NP_174086.1| splicing factor U2af small subunit A [Arabidops... 95 9e-23
ref|XP_002890741.1| hypothetical protein ARALYDRAFT_472969 [Arab... 95 9e-23
>ref|XP_002510741.1| U2 snrnp auxiliary factor, small subunit, putative [Ricinus
communis] gi|223551442|gb|EEF52928.1| U2 snrnp auxiliary
factor, small subunit, putative [Ricinus communis]
Length = 272
Score = 95.1 bits (235), Expect(2) = 3e-23
Identities = 45/58 (77%), Positives = 48/58 (82%)
Frame = -3
Query: 364 FGEIESLNVCDNLADHMIGNVYIQFEEKDQAAAALQSFHGCFYSGSPIITDFFPSLTF 191
FGEIESLNVCDNLADHMIGNVY+QF E+DQAAAALQ+ G FYSG PII DF P F
Sbjct: 92 FGEIESLNVCDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDF 149
Score = 38.1 bits (87), Expect(2) = 3e-23
Identities = 25/71 (35%), Positives = 30/71 (42%), Gaps = 4/71 (5%)
Frame = -2
Query: 206 PVTNFCETTCHQFEEKNCNR----RXXXXXXXXXXXXXXXXXXXXXGKAESVGVRSASPP 39
PVT+F E TC QFEE NCNR +A RS S P
Sbjct: 145 PVTDFREATCRQFEENNCNRGGYCNFMHVKLIGRDLRRKLFGRYRGYRASRSRSRSVS-P 203
Query: 38 HNHRRERESNR 6
HRRE+ ++R
Sbjct: 204 SRHRREKSNDR 214
>ref|XP_002307825.1| predicted protein [Populus trichocarpa] gi|222857274|gb|EEE94821.1|
predicted protein [Populus trichocarpa]
Length = 272
Score = 95.5 bits (236), Expect(2) = 7e-23
Identities = 45/58 (77%), Positives = 49/58 (84%)
Frame = -3
Query: 364 FGEIESLNVCDNLADHMIGNVYIQFEEKDQAAAALQSFHGCFYSGSPIITDFFPSLTF 191
FGEIE+LNVCDNLADHMIGNVY+QF+E+DQAAAALQS G FYSG PII DF P F
Sbjct: 92 FGEIENLNVCDNLADHMIGNVYVQFKEEDQAAAALQSLQGRFYSGRPIIADFSPVTDF 149
Score = 36.6 bits (83), Expect(2) = 7e-23
Identities = 14/20 (70%), Positives = 16/20 (80%)
Frame = -2
Query: 206 PVTNFCETTCHQFEEKNCNR 147
PVT+F E TC Q+EE NCNR
Sbjct: 145 PVTDFREATCRQYEENNCNR 164
>dbj|BAJ34257.1| unnamed protein product [Thellungiella halophila]
Length = 308
Score = 95.1 bits (235), Expect(2) = 9e-23
Identities = 44/58 (75%), Positives = 49/58 (84%)
Frame = -3
Query: 364 FGEIESLNVCDNLADHMIGNVYIQFEEKDQAAAALQSFHGCFYSGSPIITDFFPSLTF 191
FGEIESLN+CDNLADHMIGNVY+QF+E+DQAAAALQ+ G FYSG PII DF P F
Sbjct: 92 FGEIESLNICDNLADHMIGNVYVQFKEEDQAAAALQALQGRFYSGRPIIADFSPVTDF 149
Score = 36.6 bits (83), Expect(2) = 9e-23
Identities = 14/20 (70%), Positives = 16/20 (80%)
Frame = -2
Query: 206 PVTNFCETTCHQFEEKNCNR 147
PVT+F E TC Q+EE NCNR
Sbjct: 145 PVTDFREATCRQYEENNCNR 164
>ref|NP_174086.1| splicing factor U2af small subunit A [Arabidopsis thaliana]
gi|75336807|sp|Q9S709.1|U2AFA_ARATH RecName:
Full=Splicing factor U2af small subunit A; AltName:
Full=U2 auxiliary factor 35 kDa subunit A; AltName:
Full=U2 small nuclear ribonucleoprotein auxiliary factor
small subunit A; Short=U2 snRNP auxiliary factor small
subunit A; AltName: Full=Zinc finger CCCH
domain-containing protein 8; Short=AtC3H8
gi|5668775|gb|AAD46002.1|AC005916_14 Strong similarity
to gb|Y18349 U2 snRNP auxiliary factor, small subunit
from Oryza sativa. ESTs gb|AA586295 and gb|AA597332 come
from this gene [Arabidopsis thaliana]
gi|6693017|gb|AAF24943.1|AC012375_6 T22C5.10
[Arabidopsis thaliana]
gi|12744991|gb|AAK06875.1|AF344324_1 putative U2 snRNP
auxiliary factor [Arabidopsis thaliana]
gi|17528936|gb|AAL38678.1| putative U2 snRNP auxiliary
factor [Arabidopsis thaliana] gi|19699275|gb|AAL91249.1|
At1g27650/T22C5_2 [Arabidopsis thaliana]
gi|20465943|gb|AAM20157.1| putative U2 snRNP auxiliary
factor protein [Arabidopsis thaliana]
gi|21595106|gb|AAM66073.1| putative U2 snRNP auxiliary
factor [Arabidopsis thaliana] gi|21689611|gb|AAM67427.1|
At1g27650/T22C5_2 [Arabidopsis thaliana]
gi|332192737|gb|AEE30858.1| splicing factor U2af small
subunit A [Arabidopsis thaliana]
Length = 296
Score = 95.1 bits (235), Expect(2) = 9e-23
Identities = 44/58 (75%), Positives = 49/58 (84%)
Frame = -3
Query: 364 FGEIESLNVCDNLADHMIGNVYIQFEEKDQAAAALQSFHGCFYSGSPIITDFFPSLTF 191
FGEIESLN+CDNLADHMIGNVY+QF+E+DQAAAALQ+ G FYSG PII DF P F
Sbjct: 92 FGEIESLNICDNLADHMIGNVYVQFKEEDQAAAALQALQGRFYSGRPIIADFSPVTDF 149
Score = 36.6 bits (83), Expect(2) = 9e-23
Identities = 14/20 (70%), Positives = 16/20 (80%)
Frame = -2
Query: 206 PVTNFCETTCHQFEEKNCNR 147
PVT+F E TC Q+EE NCNR
Sbjct: 145 PVTDFREATCRQYEENNCNR 164
>ref|XP_002890741.1| hypothetical protein ARALYDRAFT_472969 [Arabidopsis lyrata subsp.
lyrata] gi|297336583|gb|EFH67000.1| hypothetical protein
ARALYDRAFT_472969 [Arabidopsis lyrata subsp. lyrata]
Length = 296
Score = 95.1 bits (235), Expect(2) = 9e-23
Identities = 44/58 (75%), Positives = 49/58 (84%)
Frame = -3
Query: 364 FGEIESLNVCDNLADHMIGNVYIQFEEKDQAAAALQSFHGCFYSGSPIITDFFPSLTF 191
FGEIESLN+CDNLADHMIGNVY+QF+E+DQAAAALQ+ G FYSG PII DF P F
Sbjct: 92 FGEIESLNICDNLADHMIGNVYVQFKEEDQAAAALQALQGRFYSGRPIIADFSPVTDF 149
Score = 36.6 bits (83), Expect(2) = 9e-23
Identities = 14/20 (70%), Positives = 16/20 (80%)
Frame = -2
Query: 206 PVTNFCETTCHQFEEKNCNR 147
PVT+F E TC Q+EE NCNR
Sbjct: 145 PVTDFREATCRQYEENNCNR 164