BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cephaelis21_contig00022405
         (577 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

pir||S65812 RNA-directed DNA polymerase (EC 2.7.7.49) (clone DW1...   127   2e-27
gb|ABA98491.1| retrotransposon protein, putative, unclassified [...   124   9e-27
emb|CCA66020.1| hypothetical protein [Beta vulgaris subsp. vulga...   124   9e-27
emb|CAA73798.1| reverse transcriptase [Beta vulgaris subsp. vulg...   120   2e-25
gb|AAC63678.1| putative non-LTR retroelement reverse transcripta...   117   1e-24

>pir||S65812 RNA-directed DNA polymerase (EC 2.7.7.49) (clone DW15) -
           Arabidopsis thaliana retrotransposon Ta11-1
           gi|976278|gb|AAA75254.1| reverse transcriptase
           [Arabidopsis thaliana]
          Length = 1333

 Score =  127 bits (318), Expect = 2e-27
 Identities = 77/194 (39%), Positives = 112/194 (57%), Gaps = 4/194 (2%)
 Frame = -1

Query: 574 TVQSRRMRLHLSSIKNV*GEWLEEKEEISFEGIK--YFSNLFR--DELEYSDQYKDNLNR 407
           +V+  R + H+  + +V G  L  K+E++   I   YFS+LF+  D   + D ++D   R
Sbjct: 360 SVKDNRGKQHIDQLCDVNG--LFHKDEMNKGAIAEAYFSDLFKSTDPSSFVDLFEDYQPR 417

Query: 406 LLRCIPRLLTQEDNNLLEAEPSLEEVREAVFALDPDSSAGPDGFTGNFFQNC*EIICQDV 227
           +        T+  NN L A  S  E+REAVFA+   S+ G DGFTG FFQ    IIC  V
Sbjct: 418 V--------TESMNNTLIAAVSKNEIREAVFAIRSSSAPGVDGFTGFFFQKYWSIICLQV 469

Query: 226 YQAVVDFFCGSDIPRGWSATLISLIPKKEHPQYFSDFRPISLCNFSNKILSKLLARRLEN 47
            + + +FF     P+ W+ T + L+PKK+ P   +D RPISLC+   KI+SK++ RRL+ 
Sbjct: 470 TKEIQNFFLLGYFPKSWNFTHLCLLPKKKKPDKMTDLRPISLCSVLYKIISKIMVRRLQP 529

Query: 46  ILPKIISPQQSGFV 5
            LP ++SP QS FV
Sbjct: 530 FLPDLVSPNQSAFV 543


>gb|ABA98491.1| retrotransposon protein, putative, unclassified [Oryza sativa
            Japonica Group]
          Length = 1621

 Score =  124 bits (312), Expect = 9e-27
 Identities = 69/186 (37%), Positives = 104/186 (55%)
 Frame = -1

Query: 562  RRMRLHLSSIKNV*GEWLEEKEEISFEGIKYFSNLFRDELEYSDQYKDNLNRLLRCIPRL 383
            RR R  ++ ++   G W+E +E+     I++F  LF      +     N  +LL  + R 
Sbjct: 618  RRRRNRINKLRREDGSWVEREEDKRAMIIEFFKQLF------TSNGGQNSQKLLDVVDRK 671

Query: 382  LTQEDNNLLEAEPSLEEVREAVFALDPDSSAGPDGFTGNFFQNC*EIICQDVYQAVVDFF 203
            ++   N  L AE + EEV+EA+ A+    + GPDG    F++ C +++ + V   V++  
Sbjct: 672  VSGAMNESLRAEFTREEVKEALDAIGDLKAPGPDGMPAGFYKACWDVVGEKVTDEVLEVL 731

Query: 202  CGSDIPRGWSATLISLIPKKEHPQYFSDFRPISLCNFSNKILSKLLARRLENILPKIISP 23
             G  IP GW+   I LIPK + P+   D RPISLCN   K++SK+LA RL+ ILP +ISP
Sbjct: 732  RGGAIPEGWNDITIVLIPKVKKPELIKDLRPISLCNVCYKLVSKVLANRLKKILPDVISP 791

Query: 22   QQSGFV 5
             QS FV
Sbjct: 792  AQSAFV 797


>emb|CCA66020.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1365

 Score =  124 bits (312), Expect = 9e-27
 Identities = 68/186 (36%), Positives = 111/186 (59%)
 Frame = -1

Query: 562 RRMRLHLSSIKNV*GEWLEEKEEISFEGIKYFSNLFRDELEYSDQYKDNLNRLLRCIPRL 383
           R+ +  +  IKN  G+W+  K++I  E + YF+++F+   ++S +Y + L+ +   IP++
Sbjct: 371 RKQKNEILVIKNSAGKWVSSKQDIQGEFLGYFADIFQGS-QHSQEYWEELDGIRHLIPQI 429

Query: 382 LTQEDNNLLEAEPSLEEVREAVFALDPDSSAGPDGFTGNFFQNC*EIICQDVYQAVVDFF 203
              +  +L++   + EEVR  VF +    + GPDG    F+Q    I+ +D+++AV  FF
Sbjct: 430 DLMQREDLIKPV-TREEVRNVVFQMGSLKAPGPDGIPAIFYQKHWSIVGEDIWRAVSHFF 488

Query: 202 CGSDIPRGWSATLISLIPKKEHPQYFSDFRPISLCNFSNKILSKLLARRLENILPKIISP 23
               I + W+ T I LIPK E P+    FRPISLCN   KI+SK++A RL+ IL  I++P
Sbjct: 489 TTGYILQEWNQTNICLIPKVERPEQACQFRPISLCNVIYKIISKIIANRLKPILKSIVTP 548

Query: 22  QQSGFV 5
            Q+ FV
Sbjct: 549 YQNAFV 554


>emb|CAA73798.1| reverse transcriptase [Beta vulgaris subsp. vulgaris]
          Length = 507

 Score =  120 bits (301), Expect = 2e-25
 Identities = 67/188 (35%), Positives = 109/188 (57%), Gaps = 1/188 (0%)
 Frame = -1

Query: 562 RRMRLHLSSIKNV*GEWLEEKEEISFEGIKYFSNLFRDELEYSDQYKD-NLNRLLRCIPR 386
           RR + HL  IK   G+ + +  EI  E + YF ++F +E      +   N N+L      
Sbjct: 234 RRHKNHLQYIKTE-GKNISKPGEIKEEAVAYFQHIFAEEFSTRPVFNGLNFNKL------ 286

Query: 385 LLTQEDNNLLEAEPSLEEVREAVFALDPDSSAGPDGFTGNFFQNC*EIICQDVYQAVVDF 206
             ++ + + L A  + EE+ EAV + D   + GPDGF   F ++  E+I +D+Y+ V DF
Sbjct: 287 --SESECSSLIAPFTHEEIDEAVDSCDAQKAPGPDGFNFKFIKSSWEVIKKDIYKIVEDF 344

Query: 205 FCGSDIPRGWSATLISLIPKKEHPQYFSDFRPISLCNFSNKILSKLLARRLENILPKIIS 26
           +    +P G ++  I+LIPK +HP+ F++FRPIS+     KI++K+LARRL+ ++  +I 
Sbjct: 345 WASGSLPHGCNSAFIALIPKTQHPRGFNEFRPISMVGCLYKIIAKILARRLQRVMDHLIG 404

Query: 25  PQQSGFVK 2
           P QS F+K
Sbjct: 405 PYQSSFIK 412


>gb|AAC63678.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 1216

 Score =  117 bits (293), Expect = 1e-24
 Identities = 62/168 (36%), Positives = 99/168 (58%), Gaps = 1/168 (0%)
 Frame = -1

Query: 502 KEEISFEGIKYFSNLFRD-ELEYSDQYKDNLNRLLRCIPRLLTQEDNNLLEAEPSLEEVR 326
           +++I  E + YF +  +    +Y     + L  LL   P   +++D+ LL    + EE++
Sbjct: 124 QQDIQTEAVNYFQDFLQTIPADYEGMCVEELENLL---PFRCSEDDHRLLTRVVTGEEIK 180

Query: 325 EAVFALDPDSSAGPDGFTGNFFQNC*EIICQDVYQAVVDFFCGSDIPRGWSATLISLIPK 146
           + +F++  D S GPDG+T  F++   EII  +V  A+  FF    +P+G ++T+++LIPK
Sbjct: 181 KVIFSMPKDKSPGPDGYTSEFYKASWEIIGDEVIIAIQSFFAKGFLPKGVNSTILALIPK 240

Query: 145 KEHPQYFSDFRPISLCNFSNKILSKLLARRLENILPKIISPQQSGFVK 2
           K+  +   D+RPIS CN   K +SK+LA RL+ ILPK I   QS FVK
Sbjct: 241 KKEAREIKDYRPISCCNVLYKAISKILANRLKRILPKFIVGNQSAFVK 288