BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cephaelis21_contig00021534
         (1081 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

pir||S65812 RNA-directed DNA polymerase (EC 2.7.7.49) (clone DW1...   103   7e-47
gb|AAB82639.1| putative non-LTR retroelement reverse transcripta...   104   4e-45
emb|CAB39638.1| RNA-directed DNA polymerase-like protein [Arabid...   113   2e-44
gb|AFP55574.1| non-ltr retroelement reverse transcriptase [Rosa ...   105   3e-43
emb|CCA66036.1| hypothetical protein [Beta vulgaris subsp. vulga...   108   3e-42

>pir||S65812 RNA-directed DNA polymerase (EC 2.7.7.49) (clone DW15) -
           Arabidopsis thaliana retrotransposon Ta11-1
           gi|976278|gb|AAA75254.1| reverse transcriptase
           [Arabidopsis thaliana]
          Length = 1333

 Score =  103 bits (258), Expect(3) = 7e-47
 Identities = 59/200 (29%), Positives = 98/200 (49%)
 Frame = +2

Query: 32  WDELRLKRLNWSSHWFLGGDFNDILDNDDKVGGRKRHPSSFKHFQNFVQDMGMQDLGFLG 211
           W+++    +N    W + GDFN IL N +K GG +R  SSF  F + +    M +L  +G
Sbjct: 119 WEKITRIGINRKEPWCMLGDFNPILHNGEKRGGPRRGDSSFLPFTDMLDSCDMLELPSIG 178

Query: 212 RKWTWANNRTNEGFVEERLDRFFGSPDWVIQNSHAAVSHISRQSSDHSLLLLNTHPPARK 391
             +TW   +TNE +++ RLDR FG+ +W      +    + ++ SDH  +L+       +
Sbjct: 179 NPFTW-GGKTNEMWIQSRLDRCFGNKNWFRFFPISNQEFLDKRGSDHRPVLVRLTKTKEE 237

Query: 392 AKKRFHFDQRWIKKEGCEEVVKQAWRQPQKGSPLFQTQNRIKTCRVELLNWSRYTCTNSE 571
            +  F FD+R   +   +E + QAW   Q+   L    +++K CR  L  W +    NS 
Sbjct: 238 YRGNFRFDKRLFNQPNVKETIVQAWNGSQRNENLL-VLDKLKHCRSALSRWKKENNINSS 296

Query: 572 KQIQMIKNQMDSLQSLGGQR 631
            +I   +  ++  QS G  R
Sbjct: 297 TRITQARAALELEQSSGFPR 316



 Score = 82.8 bits (203), Expect(3) = 7e-47
 Identities = 42/102 (41%), Positives = 58/102 (56%)
 Frame = +1

Query: 775  NEGEERIDSLASLKGGYCTTETDMLKEMEDYFGKLFTSSNPSNFEGILSGLPCTISHSMN 954
            N G++ ID L  + G +   E +     E YF  LF S++PS+F  +       ++ SMN
Sbjct: 364  NRGKQHIDQLCDVNGLFHKDEMNKGAIAEAYFSDLFKSTDPSSFVDLFEDYQPRVTESMN 423

Query: 955  KRLTKPVQKEEIKKVVFAMKPNSAPGPDGMTPLFFQKYWHII 1080
              L   V K EI++ VFA++ +SAPG DG T  FFQKYW II
Sbjct: 424  NTLIAAVSKNEIREAVFAIRSSSAPGVDGFTGFFFQKYWSII 465



 Score = 48.9 bits (115), Expect(3) = 7e-47
 Identities = 18/32 (56%), Positives = 23/32 (71%)
 Frame = +3

Query: 687 EELFWKQKSRVQWLQEGDKNTKYFHAATTQRR 782
           EE+FW QKSR +W+  GDKNT +FHA+    R
Sbjct: 334 EEVFWSQKSRAKWMHSGDKNTSFFHASVKDNR 365


>gb|AAB82639.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 1374

 Score =  104 bits (260), Expect(3) = 4e-45
 Identities = 63/223 (28%), Positives = 117/223 (52%)
 Frame = +2

Query: 14  AIRKQQWDELRLKRLNWSSHWFLGGDFNDILDNDDKVGGRKRHPSSFKHFQNFVQDMGMQ 193
           A R + W+ L    L+ S  W L GDFN+++D  +K+GG  R  SS   F+  +   G+ 
Sbjct: 111 AERGELWERLTRLGLSRSGPWMLTGDFNELVDPSEKIGGPARKESSCLEFRQMLNSCGLW 170

Query: 194 DLGFLGRKWTWANNRTNEGFVEERLDRFFGSPDWVIQNSHAAVSHISRQSSDHSLLLLNT 373
           ++   G +++W  NR N+  V+ RLDR   +  W+     A  +++ +  SDHS L+ N 
Sbjct: 171 EVNHSGYQFSWYGNR-NDELVQCRLDRTVANQAWMELFPQAKATYLQKICSDHSPLINNL 229

Query: 374 HPPARKAKKRFHFDQRWIKKEGCEEVVKQAWRQPQKGSPLFQTQNRIKTCRVELLNWSRY 553
                +    F +D+RW+++EG ++++   W Q    +     + +I +CR E+  W R 
Sbjct: 230 VGDNWRKWAGFKYDKRWVQREGFKDLLCNFWSQQSTKTNALMME-KIASCRREISKWKRV 288

Query: 554 TCTNSEKQIQMIKNQMDSLQSLGGQRDWQQWNLLKQELNLAYD 682
           +  +S  +IQ ++ ++D+  +     D ++   LK+EL+  Y+
Sbjct: 289 SKPSSAVRIQELQFKLDA-ATKQIPFDRRELARLKKELSQEYN 330



 Score = 69.7 bits (169), Expect(3) = 4e-45
 Identities = 33/96 (34%), Positives = 51/96 (53%)
 Frame = +1

Query: 784  EERIDSLASLKGGYCTTETDMLKEMEDYFGKLFTSSNPSNFEGILSGLPCTISHSMNKRL 963
            + RI  L   +G   T++ D+ +  E YF KLF S +       L  L   +S  MN  L
Sbjct: 365  QNRIQKLIDEEGREWTSDEDLGRVAEAYFKKLFASEDVGYTVEELENLTPLVSDQMNNNL 424

Query: 964  TKPVQKEEIKKVVFAMKPNSAPGPDGMTPLFFQKYW 1071
              P+ KEE+++  F++ P+  PGPDGM    +Q++W
Sbjct: 425  LAPITKEEVQRATFSINPHKCPGPDGMNGFLYQQFW 460



 Score = 55.5 bits (132), Expect(3) = 4e-45
 Identities = 21/32 (65%), Positives = 27/32 (84%)
 Frame = +3

Query: 687 EELFWKQKSRVQWLQEGDKNTKYFHAATTQRR 782
           EE FW++KSR+ W++ GD+NTKYFHAAT  RR
Sbjct: 332 EEQFWQEKSRIMWMRNGDRNTKYFHAATKNRR 363


>emb|CAB39638.1| RNA-directed DNA polymerase-like protein [Arabidopsis thaliana]
           gi|7267666|emb|CAB78094.1| RNA-directed DNA
           polymerase-like protein [Arabidopsis thaliana]
          Length = 1274

 Score =  113 bits (282), Expect(3) = 2e-44
 Identities = 70/218 (32%), Positives = 105/218 (48%)
 Frame = +2

Query: 32  WDELRLKRLNWSSHWFLGGDFNDILDNDDKVGGRKRHPSSFKHFQNFVQDMGMQDLGFLG 211
           WD++       SS W L GDFNDILDN +K GG  R    F  F++FV   G+ D+   G
Sbjct: 61  WDKISSLGAQRSSAWLLTGDFNDILDNSEKQGGPLRWEGFFLAFRSFVSQNGLWDINHTG 120

Query: 212 RKWTWANNRTNEGFVEERLDRFFGSPDWVIQNSHAAVSHISRQSSDHSLLLLNTHPPARK 391
              +W   R +  F++ RLDR  G+  W      +   ++  + SDH  L+     P  K
Sbjct: 121 NSLSWRGTRYSH-FIKSRLDRALGNCSWSELFPMSKCEYLRFEGSDHRPLVTYFGAPPLK 179

Query: 392 AKKRFHFDQRWIKKEGCEEVVKQAWRQPQKGSPLFQTQNRIKTCRVELLNWSRYTCTNSE 571
             K F FD+R  +KE    +VK+ W   ++ S L+    +I  CR  ++ W++   +NS 
Sbjct: 180 RSKPFRFDRRLREKEEIRALVKEVWELARQDSVLY----KISRCRQSIIKWTKEQNSNSA 235

Query: 572 KQIQMIKNQMDSLQSLGGQRDWQQWNLLKQELNLAYDQ 685
           K I+  +  ++S  S     D      + QEL  AY Q
Sbjct: 236 KAIKKAQQALESALS-ADIPDPSLIGSITQELEAAYRQ 272



 Score = 60.5 bits (145), Expect(3) = 2e-44
 Identities = 30/82 (36%), Positives = 44/82 (53%)
 Frame = +1

Query: 835  ETDMLKEMEDYFGKLFTSSNPSNFEGILSGLPCTISHSMNKRLTKPVQKEEIKKVVFAMK 1014
            E  +   +  YF  +FT+SN S+ + +   L   IS   N+ L K     EIK+ +F++ 
Sbjct: 323  EEQIASTISSYFQNIFTTSNNSDLQVVQEALSPIISSHCNEELIKISSLLEIKEALFSIS 382

Query: 1015 PNSAPGPDGMTPLFFQKYWHII 1080
             + APGPDG +  FF  YW II
Sbjct: 383  ADKAPGPDGFSASFFHAYWDII 404



 Score = 53.9 bits (128), Expect(3) = 2e-44
 Identities = 24/37 (64%), Positives = 26/37 (70%)
 Frame = +3

Query: 684 KEELFWKQKSRVQWLQEGDKNTKYFHAATTQRRRGKN 794
           +EELFWKQ SRVQWL  GD+N  YFHA T  RR   N
Sbjct: 272 QEELFWKQWSRVQWLNSGDRNKGYFHATTRTRRMLNN 308


>gb|AFP55574.1| non-ltr retroelement reverse transcriptase [Rosa rugosa]
          Length = 1656

 Score =  105 bits (261), Expect(3) = 3e-43
 Identities = 56/204 (27%), Positives = 99/204 (48%)
 Frame = +2

Query: 74   WFLGGDFNDILDNDDKVGGRKRHPSSFKHFQNFVQDMGMQDLGFLGRKWTWANNRTNEGF 253
            W + GDFN++LD  +K GG    P   K F++F+ +  ++DL F G  ++W   R    F
Sbjct: 737  WLVLGDFNEVLDPSEKWGGGPPLPWRIKLFRDFLNNGHLRDLHFKGPGFSWFAMRHGRVF 796

Query: 254  VEERLDRFFGSPDWVIQNSHAAVSHISRQSSDHSLLLLNTHPPARKAKKRFHFDQRWIKK 433
            ++ERLDR  G+  W     +  + H+ +  SDH  LLL+++P      + F F+Q W   
Sbjct: 797  IKERLDRALGNIAWSSSQPNTQILHLPKIGSDHRPLLLDSNPKMLNKTRLFRFEQMWTTH 856

Query: 434  EGCEEVVKQAWRQPQKGSPLFQTQNRIKTCRVELLNWSRYTCTNSEKQIQMIKNQMDSLQ 613
            E   +V++++W     GS +      + +C   L  WS+   +N   Q+  + + ++ L 
Sbjct: 857  EEYSDVIQRSWPPAFGGSAMRSWNRNLLSCGKALKMWSKEKFSNPSVQVADLLSDIEKLH 916

Query: 614  SLGGQRDWQQWNLLKQELNLAYDQ 685
                     Q N+L  ++   + Q
Sbjct: 917  QSNPPDAHHQINILTDQVTKLWTQ 940



 Score = 69.3 bits (168), Expect(3) = 3e-43
 Identities = 31/85 (36%), Positives = 48/85 (56%)
 Frame = +1

Query: 817  GGYCTTETDMLKEMEDYFGKLFTSSNPSNFEGILSGLPCTISHSMNKRLTKPVQKEEIKK 996
            G +  +E D+  +  DYF  L+ S+ P  +E +L  +   ++  MNK L+ PV   E+KK
Sbjct: 985  GNWLDSEADVALQFLDYFTALYQSNGPQQWEEVLDFVDTAVTAEMNKILSSPVSLLEVKK 1044

Query: 997  VVFAMKPNSAPGPDGMTPLFFQKYW 1071
             VF +    APGPDG + +F+Q  W
Sbjct: 1045 AVFDLGATKAPGPDGFSGIFYQNQW 1069



 Score = 48.9 bits (115), Expect(3) = 3e-43
 Identities = 19/39 (48%), Positives = 29/39 (74%)
 Frame = +3

Query: 669  T*LMIKEELFWKQKSRVQWLQEGDKNTKYFHAATTQRRR 785
            T L  ++E++W Q+SRV WL+ GD+N+ +FH  T QRR+
Sbjct: 935  TKLWTQDEMYWHQRSRVNWLKLGDQNSSFFHQTTIQRRQ 973


>emb|CCA66036.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1369

 Score =  108 bits (269), Expect(3) = 3e-42
 Identities = 63/185 (34%), Positives = 99/185 (53%), Gaps = 6/185 (3%)
 Frame = +2

Query: 74  WFLGGDFNDILDNDDKVGGRKRHPSSFKHFQNFVQDMGMQDLGFLGRKWTWANNRTNEGF 253
           W  GGDFN +L   +K GG   +      F+N +++    DLGF+G ++TW NNR  +  
Sbjct: 137 WLCGGDFNLMLVASEKKGGDGFNSREADIFRNAMEECHFMDLGFVGYEFTWTNNRGGDAN 196

Query: 254 VEERLDRFFGSPDWVIQNSHAAVSHISRQSSDH-----SLLLLNTHPPARKAKKRFHFDQ 418
           ++ERLDRF  +  W I+   + VSH+ ++ SDH     S+    +     K  KRF F+ 
Sbjct: 197 IQERLDRFVANDLWKIKFPGSFVSHLPKRKSDHVPIVASVKGAQSAATRTKKSKRFRFEA 256

Query: 419 RWIKKEGCEEVVKQAW-RQPQKGSPLFQTQNRIKTCRVELLNWSRYTCTNSEKQIQMIKN 595
            W+++   +EVVK+ W R    G  L +T N+       LL+WS+    +  K+I+M ++
Sbjct: 257 MWLREGESDEVVKETWMRGTDAGINLARTANK-------LLSWSKQKFGHVAKEIRMCQH 309

Query: 596 QMDSL 610
           QM  L
Sbjct: 310 QMKVL 314



 Score = 63.5 bits (153), Expect(3) = 3e-42
 Identities = 32/101 (31%), Positives = 50/101 (49%)
 Frame = +1

Query: 778  EGEERIDSLASLKGGYCTTETDMLKEMEDYFGKLFTSSNPSNFEGILSGLPCTISHSMNK 957
            E    +  + +  G +   E D+ +    YF  LF S N    + IL+ +   I+  +  
Sbjct: 372  EQRNNVRRIRNEAGEWFEDEDDVTECFAHYFENLFQSGNNCEMDPILNIVKPQITDELGT 431

Query: 958  RLTKPVQKEEIKKVVFAMKPNSAPGPDGMTPLFFQKYWHII 1080
            +L  P ++EE+   +  M PN APGPDGM  LF+Q +W  I
Sbjct: 432  QLDAPFRREEVSAALAQMHPNKAPGPDGMNALFYQHFWDTI 472



 Score = 48.1 bits (113), Expect(3) = 3e-42
 Identities = 17/37 (45%), Positives = 26/37 (70%)
 Frame = +3

Query: 684 KEELFWKQKSRVQWLQEGDKNTKYFHAATTQRRRGKN 794
           +EE++W Q+SR  W++ GDKNTK+FH   + R +  N
Sbjct: 340 REEVYWHQRSRQDWIKSGDKNTKFFHQKASHREQRNN 376