BLASTX nr result
ID: Cephaelis21_contig00020932
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cephaelis21_contig00020932
(1046 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAB82639.1| putative non-LTR retroelement reverse transcripta... 162 1e-37
gb|AAD20714.1| putative non-LTR retroelement reverse transcripta... 154 5e-35
emb|CAB40051.1| putative protein [Arabidopsis thaliana] gi|72677... 153 8e-35
gb|AAC33961.1| contains similarity to reverse trancriptase (Pfam... 152 1e-34
pir||T00833 RNA-directed DNA polymerase homolog T13L16.7 - Arabi... 152 2e-34
>gb|AAB82639.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1374
Score = 162 bits (411), Expect = 1e-37
Identities = 109/351 (31%), Positives = 179/351 (50%), Gaps = 3/351 (0%)
Frame = +1
Query: 1 CRGLGGPSTISQLREELRFHLPNIVFLCETKKK-SFVHSVCTKLKMLSMWRVVEPRGLSG 177
C+G+G T+ LRE + P ++FLCETKK+ +++ +V L + VEP G SG
Sbjct: 8 CQGVGNTPTVRHLREIRGLYFPEVIFLCETKKRRNYLENVVGHLGFFDL-HTVEPIGKSG 66
Query: 178 GLMIGWSDRIVVKQVVLNEFCIQ--IEFEDSEIQQVCWGIFVYASIDKAVRRSQWVFLQQ 351
GL + W D + +K + ++ I + ++D E C +Y +A R W L +
Sbjct: 67 GLALMWKDSVQIKVLQSDKRLIDALLIWQDKEFYLTC----IYGEPVQAERGELWERLTR 122
Query: 352 QRHFWGKFWFLGGDLNDIRDRSEKQGGTARSEGSFRGFRSFIQDMEMAEIQFNGALWTWA 531
W L GD N++ D SEK GG AR E S FR + + E+ +G ++W
Sbjct: 123 LGLSRSGPWMLTGDFNELVDPSEKIGGPARKESSCLEFRQMLNSCGLWEVNHSGYQFSWY 182
Query: 532 NNRDGEGYVEERLDRFFASPEWLLQSPRAVVHHILKQTSDHAMLILDSQPPSKPRARRFL 711
NR+ E V+ RLDR A+ W+ P+A ++ K SDH+ LI + + + F
Sbjct: 183 GNRNDE-LVQCRLDRTVANQAWMELFPQAKATYLQKICSDHSPLINNLVGDNWRKWAGFK 241
Query: 712 FDKRLLNLPQCEETVAVAWNKAQIGTPMFQVVSRIKACRVALLKLKGNAQLNSGKAIQAI 891
+DKR + ++ + W++ T ++ +I +CR + K K ++ +S IQ +
Sbjct: 242 YDKRWVQREGFKDLLCNFWSQQSTKTNAL-MMEKIASCRREISKWKRVSKPSSAVRIQEL 300
Query: 892 KSKMMAMQEKGGQRDWQEWANLKLQLGEEYRKEEVYWCQKSRVQWLKEGDQ 1044
+ K+ A K D +E A LK +L +EY EE +W +KSR+ W++ GD+
Sbjct: 301 QFKLDA-ATKQIPFDRRELARLKKELSQEYNNEEQFWQEKSRIMWMRNGDR 350
>gb|AAD20714.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1750
Score = 154 bits (388), Expect = 5e-35
Identities = 106/352 (30%), Positives = 167/352 (47%), Gaps = 6/352 (1%)
Frame = +1
Query: 7 GLGGPSTISQLREELRFHLPNIVFLCETKKKSFVHSVCTKLKMLSMWRVVE--PRGLSGG 180
G+G P T S+L R + +I+FL ET + VC L V+ P G SGG
Sbjct: 391 GIGMPLTQSRLFRLFRMYNYDILFLVETLNQC--DKVCKLAYDLGFPNVITQPPNGRSGG 448
Query: 181 LMIGWSDRIVVKQVVLNEFCIQ--IEFEDSEIQQVCWGIFVYASIDKAVRRSQWVFLQQQ 354
L + W + + + + +E I + F + C VY ++ R W L+
Sbjct: 449 LALMWKNNVSLSLISQDERLIDSHVTFNNKSFYLSC----VYGHPTQSERHQLWQTLEHI 504
Query: 355 RHFWGKFWFLGGDLNDIRDRSEKQGGTARSEGSFRGFRSFIQDMEMAEIQFNGALWTWAN 534
W L GD N+I +EK GG R E +FR FR+ + ++ +++ G ++W
Sbjct: 505 SDNRNAEWLLVGDFNEILSNAEKIGGPMREEWTFRNFRNMVSHCDIEDMRSKGDRFSWVG 564
Query: 535 NRDGEGYVEERLDRFFASPEWLLQSPRAVVHHILKQTSDHAMLILDSQPPSKPRARRFLF 714
R V+ LDR F + W P A + + SDH +++ R++ F F
Sbjct: 565 ERHTHT-VKCCLDRVFINSAWTATFPYAEIEFLDFTGSDHKPVLVHFNESFPRRSKLFRF 623
Query: 715 DKRLLNLPQCEETVAVAW--NKAQIGTPMFQVVSRIKACRVALLKLKGNAQLNSGKAIQA 888
D RL+++P + V +W N+ TP + RI +CR A+ +LK + LNS + I+
Sbjct: 624 DNRLIDIPTFKRIVQTSWRTNRNSRSTP---ITERISSCRQAMARLKHASNLNSEQRIKK 680
Query: 889 IKSKMMAMQEKGGQRDWQEWANLKLQLGEEYRKEEVYWCQKSRVQWLKEGDQ 1044
++S + E + D Q L+ L + + EE+YW QKSR QW+KEGDQ
Sbjct: 681 LQSSLNRAMESTRRVDRQLIPQLQESLAKAFSDEEIYWKQKSRNQWMKEGDQ 732
>emb|CAB40051.1| putative protein [Arabidopsis thaliana] gi|7267781|emb|CAB81184.1|
putative protein [Arabidopsis thaliana]
Length = 1294
Score = 153 bits (386), Expect = 8e-35
Identities = 105/347 (30%), Positives = 164/347 (47%)
Frame = +1
Query: 4 RGLGGPSTISQLREELRFHLPNIVFLCETKKKSFVHSVCTKLKMLSMWRVVEPRGLSGGL 183
+G+G P T SQL + +++FL ET K V S + P+G SGGL
Sbjct: 370 KGIGVPLTQSQLSNLCKVFKFDVLFLIETLNKCEVISNLASVLGFPNVITQPPQGHSGGL 429
Query: 184 MIGWSDRIVVKQVVLNEFCIQIEFEDSEIQQVCWGIFVYASIDKAVRRSQWVFLQQQRHF 363
+ W D + + + ++ I + + I + VY ++ R S W +
Sbjct: 430 ALLWKDSVRLSNLYQDDRHIDVHISINNIN--FYLSRVYGHPCQSERHSLWTHFENLSKT 487
Query: 364 WGKFWFLGGDLNDIRDRSEKQGGTARSEGSFRGFRSFIQDMEMAEIQFNGALWTWANNRD 543
W L GD N+I +EK GG R E +FRGFR+ + ++ +I+ G ++W R
Sbjct: 488 RNDPWILIGDFNEILSNNEKIGGPQRDEWTFRGFRNMVSTCDLKDIRSIGDRFSWVGERH 547
Query: 544 GEGYVEERLDRFFASPEWLLQSPRAVVHHILKQTSDHAMLILDSQPPSKPRARRFLFDKR 723
V+ LDR F + E P A + + SDH L L + + R F FDKR
Sbjct: 548 SHT-VKCCLDRAFINSEGAFLFPFAELEFLEFTGSDHKPLFLSLEKTETRKMRPFRFDKR 606
Query: 724 LLNLPQCEETVAVAWNKAQIGTPMFQVVSRIKACRVALLKLKGNAQLNSGKAIQAIKSKM 903
LL +P + V WNKA I + +++ CR A+ KLK + LNS I +++ +
Sbjct: 607 LLEVPHFKTYVKAGWNKA-INGQRKHLPDQVRTCRQAMAKLKHKSNLNSRIRINQLQAAL 665
Query: 904 MAMQEKGGQRDWQEWANLKLQLGEEYRKEEVYWCQKSRVQWLKEGDQ 1044
+ + + ++++ +L YR EE YW QKSR QW+KEGD+
Sbjct: 666 DKAMSSVNRTERRTISHIQRELTVAYRDEERYWQQKSRNQWMKEGDR 712
>gb|AAC33961.1| contains similarity to reverse trancriptase (Pfam: rvt.hmm, score:
42.57) [Arabidopsis thaliana]
Length = 1662
Score = 152 bits (384), Expect = 1e-34
Identities = 105/346 (30%), Positives = 163/346 (47%)
Frame = +1
Query: 7 GLGGPSTISQLREELRFHLPNIVFLCETKKKSFVHSVCTKLKMLSMWRVVEPRGLSGGLM 186
G+G P T SQL + +++FL ET K V S + P+G SGGL
Sbjct: 391 GIGVPLTQSQLSNLCKVFKFDVLFLIETLNKCEVISNLASVLGFPNVITQPPQGHSGGLA 450
Query: 187 IGWSDRIVVKQVVLNEFCIQIEFEDSEIQQVCWGIFVYASIDKAVRRSQWVFLQQQRHFW 366
+ W D + + + ++ I + + I + VY ++ R S W +
Sbjct: 451 LLWKDSVRLSNLYQDDRHIDVHISINNIN--FYLSRVYGHPCQSERHSLWTHFENLSKTR 508
Query: 367 GKFWFLGGDLNDIRDRSEKQGGTARSEGSFRGFRSFIQDMEMAEIQFNGALWTWANNRDG 546
W L GD N+I +EK GG R E +FRGFR+ + ++ +I+ G ++W R
Sbjct: 509 NDPWILIGDFNEILSNNEKIGGPQRDEWTFRGFRNMVSTCDLKDIRSIGDRFSWVGERHS 568
Query: 547 EGYVEERLDRFFASPEWLLQSPRAVVHHILKQTSDHAMLILDSQPPSKPRARRFLFDKRL 726
V+ LDR F + E P A + + SDH L L + + R F FDKRL
Sbjct: 569 HT-VKCCLDRAFINSEGAFLFPFAELEFLEFTGSDHKPLFLSLEKTETRKMRPFRFDKRL 627
Query: 727 LNLPQCEETVAVAWNKAQIGTPMFQVVSRIKACRVALLKLKGNAQLNSGKAIQAIKSKMM 906
L +P + V WNKA I + +++ CR A+ KLK + LNS I +++ +
Sbjct: 628 LEVPHFKTYVKAGWNKA-INGQRKHLPDQVRTCRQAMAKLKHKSNLNSRIRINQLQAALD 686
Query: 907 AMQEKGGQRDWQEWANLKLQLGEEYRKEEVYWCQKSRVQWLKEGDQ 1044
+ + + ++++ +L YR EE YW QKSR QW+KEGD+
Sbjct: 687 KAMSSVNRTERRTISHIQRELTVAYRDEERYWQQKSRNQWMKEGDR 732
>pir||T00833 RNA-directed DNA polymerase homolog T13L16.7 - Arabidopsis thaliana
(fragment)
Length = 1365
Score = 152 bits (383), Expect = 2e-34
Identities = 113/350 (32%), Positives = 169/350 (48%), Gaps = 2/350 (0%)
Frame = +1
Query: 1 CRGLGGPSTISQLREELRFHLPNIVFLCETKK-KSFVHSVCTKLKMLSMWRVVEPRGLSG 177
C+GL P TI L+E + H P+I+FL ETK + FV+ V L VEP G SG
Sbjct: 7 CQGLRNPWTIRYLKEMKKDHFPDILFLMETKNSQDFVYKVFCWLGY-DFIHTVEPEGRSG 65
Query: 178 GLMIGWSDRIVVKQVVLNEFCIQIEFEDSEIQQVCWGIFVYASIDKAVRRSQWVFLQQQR 357
GL I W + ++ + ++ + ++ S +V + VY +R W L
Sbjct: 66 GLAIFWKSHLEIEFLYADKNLMDLQV--SSRNKVWFISCVYGLPVTHMRPKLWEHLNSIG 123
Query: 358 HFWGKFWFLGGDLNDIRDRSEKQGGTARSEGSFRGFRSFIQDMEMAEIQFNGALWTWANN 537
+ W L GD NDIR EK GG RS SF+ F + + M E+ G +TW N
Sbjct: 124 LKRAEAWCLIGDFNDIRSNDEKLGGPRRSPSSFQCFEHMLLNCSMHELGSTGNSFTWGGN 183
Query: 538 RDGEGYVEERLDRFFASPEWLLQSPRAVVHHILKQTSDHAMLILDSQPPSKPRARRFLFD 717
R+ + +V+ +LDR F +P W P A + K SDH +++ ++ +F +D
Sbjct: 184 RNDQ-WVQCKLDRCFGNPAWFSIFPNAHQWFLEKFGSDHRPVLVKFTNDNELFRGQFRYD 242
Query: 718 KRLLNLPQCEETVAVAWNKAQIGTPMFQVVSRIKACRVALLKLKGNAQLNSGKAIQAIKS 897
KRL + P C E + +WN A S I+ CR A+ K ++ N+ I+ ++
Sbjct: 243 KRLDDDPYCIEVIHRSWNSAMSQGTHSSFFSLIE-CRRAISVWKHSSDTNAQSRIKRLRK 301
Query: 898 KMMAMQEKGGQRD-WQEWANLKLQLGEEYRKEEVYWCQKSRVQWLKEGDQ 1044
+ A EK Q W +K QL Y EE++W QKSR +WL GD+
Sbjct: 302 DLDA--EKSIQIPCWPRIEYIKDQLSLAYGDEELFWRQKSRQKWLAGGDK 349