BLASTX nr result

ID: Cephaelis21_contig00014178 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cephaelis21_contig00014178
         (528 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004151965.1| PREDICTED: probable histone H2A.1-like [Cucu...   117   1e-24
ref|NP_175517.1| histone H2A 10 [Arabidopsis thaliana] gi|297847...   117   1e-24
ref|XP_002316965.1| histone H2 [Populus trichocarpa] gi|22286003...   116   2e-24
gb|ABK94182.1| unknown [Populus trichocarpa]                          116   2e-24
ref|XP_002319269.1| histone 2 [Populus trichocarpa] gi|222857645...   115   3e-24

>ref|XP_004151965.1| PREDICTED: probable histone H2A.1-like [Cucumis sativus]
           gi|449522341|ref|XP_004168185.1| PREDICTED: probable
           histone H2A.1-like [Cucumis sativus]
          Length = 135

 Score =  117 bits (292), Expect = 1e-24
 Identities = 59/62 (95%), Positives = 59/62 (95%)
 Frame = -2

Query: 224 AARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGTSSKPAE 45
           AARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGTSSK A 
Sbjct: 71  AARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGTSSKNAG 130

Query: 44  DD 39
            D
Sbjct: 131 GD 132


>ref|NP_175517.1| histone H2A 10 [Arabidopsis thaliana]
           gi|297847464|ref|XP_002891613.1| hypothetical protein
           ARALYDRAFT_474223 [Arabidopsis lyrata subsp. lyrata]
           gi|75308805|sp|Q9C681.1|H2A1_ARATH RecName:
           Full=Probable histone H2A.1; AltName: Full=HTA10
           gi|12320785|gb|AAG50540.1|AC079828_11 histone H2A,
           putative [Arabidopsis thaliana]
           gi|13877851|gb|AAK44003.1|AF370188_1 putative histone
           H2A protein [Arabidopsis thaliana]
           gi|17065594|gb|AAL33777.1| putative histone H2A protein
           [Arabidopsis thaliana] gi|297337455|gb|EFH67872.1|
           hypothetical protein ARALYDRAFT_474223 [Arabidopsis
           lyrata subsp. lyrata] gi|332194496|gb|AEE32617.1|
           histone H2A 10 [Arabidopsis thaliana]
          Length = 132

 Score =  117 bits (292), Expect = 1e-24
 Identities = 58/62 (93%), Positives = 58/62 (93%)
 Frame = -2

Query: 224 AARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGTSSKPAE 45
           AARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTG S   AE
Sbjct: 71  AARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGASKPSAE 130

Query: 44  DD 39
           DD
Sbjct: 131 DD 132


>ref|XP_002316965.1| histone H2 [Populus trichocarpa] gi|222860030|gb|EEE97577.1|
           histone H2 [Populus trichocarpa]
          Length = 133

 Score =  116 bits (291), Expect = 2e-24
 Identities = 58/62 (93%), Positives = 59/62 (95%)
 Frame = -2

Query: 224 AARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGTSSKPAE 45
           AARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTG SSK + 
Sbjct: 71  AARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGGSSKASA 130

Query: 44  DD 39
           DD
Sbjct: 131 DD 132


>gb|ABK94182.1| unknown [Populus trichocarpa]
          Length = 134

 Score =  116 bits (291), Expect = 2e-24
 Identities = 58/62 (93%), Positives = 59/62 (95%)
 Frame = -2

Query: 224 AARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGTSSKPAE 45
           AARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTG SSK + 
Sbjct: 71  AARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGGSSKASA 130

Query: 44  DD 39
           DD
Sbjct: 131 DD 132


>ref|XP_002319269.1| histone 2 [Populus trichocarpa] gi|222857645|gb|EEE95192.1| histone
           2 [Populus trichocarpa]
          Length = 169

 Score =  115 bits (289), Expect = 3e-24
 Identities = 59/63 (93%), Positives = 61/63 (96%), Gaps = 1/63 (1%)
 Frame = -2

Query: 224 AARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGTSSK-PA 48
           AARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKK+G SSK PA
Sbjct: 106 AARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKSGGSSKAPA 165

Query: 47  EDD 39
           +DD
Sbjct: 166 DDD 168


Top