BLASTX nr result
ID: Cephaelis21_contig00012492
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cephaelis21_contig00012492
(1158 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|ACV83721.1| chloroplast ribosomal protein [Solanum tuberosum] 141 4e-82
ref|NP_001233834.1| chloroplast-specific ribosomal protein [Sola... 137 4e-81
dbj|BAB11201.1| unnamed protein product [Arabidopsis thaliana] 131 5e-76
ref|XP_002872116.1| hypothetical protein ARALYDRAFT_489312 [Arab... 131 5e-76
ref|NP_568447.1| putative 30S ribosomal protein [Arabidopsis tha... 131 5e-76
>gb|ACV83721.1| chloroplast ribosomal protein [Solanum tuberosum]
Length = 280
Score = 141 bits (355), Expect(4) = 4e-82
Identities = 67/87 (77%), Positives = 76/87 (87%)
Frame = +2
Query: 245 RGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAESMFGSIDLAASIIQRKLRKIKEKDSDH 424
RGGE GKGP+IRRCEVTLFTKKHGV+RAEEDAES++GSID+ +SIIQRKLRKIKEKDSDH
Sbjct: 101 RGGELGKGPKIRRCEVTLFTKKHGVIRAEEDAESIYGSIDMVSSIIQRKLRKIKEKDSDH 160
Query: 425 GRHMKGFDRLTFPEAGTLTVDESLDTV 505
GRHMKGFDRL + L V E L+T+
Sbjct: 161 GRHMKGFDRLKVRDPEVLLVQEDLETL 187
Score = 98.6 bits (244), Expect(4) = 4e-82
Identities = 48/54 (88%), Positives = 51/54 (94%)
Frame = +3
Query: 9 RMAWDGPLSSVKLILQGKNFELSPAVKTHVEEKLGKAVQKHSHLVREVDVRLSV 170
RM+WDGPLSSVKLILQGKN EL+PAVK +VEEKLGKAVQKHSHL REVDVRLSV
Sbjct: 47 RMSWDGPLSSVKLILQGKNLELTPAVKDYVEEKLGKAVQKHSHLAREVDVRLSV 100
Score = 93.6 bits (231), Expect(4) = 4e-82
Identities = 43/58 (74%), Positives = 50/58 (86%)
Frame = +3
Query: 621 EGVDKAEDIANEIVRTKYFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINIVYKRK 794
E DK++ E+VR K F+MPPL+V+EAIEQLENVDHDFYGFRNEETGEINIVY+RK
Sbjct: 194 EDDDKSDGFVTEVVRKKSFDMPPLSVNEAIEQLENVDHDFYGFRNEETGEINIVYRRK 251
Score = 41.6 bits (96), Expect(4) = 4e-82
Identities = 18/23 (78%), Positives = 21/23 (91%)
Frame = +1
Query: 874 GGYGLIIPKENGKAEKLKPLTVD 942
GGYGLIIPKE+GK EKL+PL V+
Sbjct: 253 GGYGLIIPKEDGKTEKLEPLEVN 275
>ref|NP_001233834.1| chloroplast-specific ribosomal protein [Solanum lycopersicum]
gi|51457950|gb|AAU03364.1| chloroplast-specific
ribosomal protein [Solanum lycopersicum]
Length = 311
Score = 137 bits (344), Expect(4) = 4e-81
Identities = 65/88 (73%), Positives = 75/88 (85%)
Frame = +2
Query: 245 RGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAESMFGSIDLAASIIQRKLRKIKEKDSDH 424
RGGE GKGP+IRRCEVTLFTKKHGV+RAEED ES++GSID+ +SIIQRKLRKIKEKDSD
Sbjct: 129 RGGELGKGPKIRRCEVTLFTKKHGVIRAEEDGESIYGSIDMVSSIIQRKLRKIKEKDSDR 188
Query: 425 GRHMKGFDRLTFPEAGTLTVDESLDTVT 508
GRHMKGFDRL + L V E L+T++
Sbjct: 189 GRHMKGFDRLKVRDPEALLVQEDLETLS 216
Score = 98.6 bits (244), Expect(4) = 4e-81
Identities = 48/54 (88%), Positives = 51/54 (94%)
Frame = +3
Query: 9 RMAWDGPLSSVKLILQGKNFELSPAVKTHVEEKLGKAVQKHSHLVREVDVRLSV 170
RM+WDGPLSSVKLILQGKN EL+PAVK +VEEKLGKAVQKHSHL REVDVRLSV
Sbjct: 75 RMSWDGPLSSVKLILQGKNLELTPAVKDYVEEKLGKAVQKHSHLAREVDVRLSV 128
Score = 93.2 bits (230), Expect(4) = 4e-81
Identities = 42/55 (76%), Positives = 49/55 (89%)
Frame = +3
Query: 630 DKAEDIANEIVRTKYFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINIVYKRK 794
DK++ E+VR K F+MPPL+V+EAIEQLENVDHDFYGFRNEETGEINIVY+RK
Sbjct: 224 DKSDGFVTEVVRKKSFDMPPLSVNEAIEQLENVDHDFYGFRNEETGEINIVYRRK 278
Score = 43.1 bits (100), Expect(4) = 4e-81
Identities = 21/32 (65%), Positives = 25/32 (78%)
Frame = +1
Query: 874 GGYGLIIPKENGKAEKLKPLTVDSAI*PSGAK 969
GGYGLIIPKE+GK EKL+PL V+ PS A+
Sbjct: 280 GGYGLIIPKEDGKTEKLEPLEVEPEKEPSIAE 311
>dbj|BAB11201.1| unnamed protein product [Arabidopsis thaliana]
Length = 365
Score = 131 bits (329), Expect(4) = 5e-76
Identities = 65/88 (73%), Positives = 73/88 (82%)
Frame = +2
Query: 245 RGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAESMFGSIDLAASIIQRKLRKIKEKDSDH 424
RGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAE+++ IDL ++IIQRKLRKIKEKDSDH
Sbjct: 183 RGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYACIDLVSTIIQRKLRKIKEKDSDH 242
Query: 425 GRHMKGFDRLTFPEAGTLTVDESLDTVT 508
GRHMKGF+RL E V E ++ T
Sbjct: 243 GRHMKGFNRLKVREPVIEPVVEDVEDST 270
Score = 92.8 bits (229), Expect(4) = 5e-76
Identities = 43/54 (79%), Positives = 50/54 (92%)
Frame = +3
Query: 9 RMAWDGPLSSVKLILQGKNFELSPAVKTHVEEKLGKAVQKHSHLVREVDVRLSV 170
+M+WDGPL+SVKLI+QGKN ELS +K HVEEK+GK+VQKHSHLVREVDVRLSV
Sbjct: 129 KMSWDGPLASVKLIIQGKNLELSEPIKQHVEEKVGKSVQKHSHLVREVDVRLSV 182
Score = 91.3 bits (225), Expect(4) = 5e-76
Identities = 42/55 (76%), Positives = 49/55 (89%)
Frame = +3
Query: 630 DKAEDIANEIVRTKYFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINIVYKRK 794
++ +D+ EIVRTK FEMPPLTV+EA+EQLE V HDFYGF+NEETGEINIVYKRK
Sbjct: 278 EEEDDLIKEIVRTKTFEMPPLTVAEAVEQLELVSHDFYGFQNEETGEINIVYKRK 332
Score = 39.3 bits (90), Expect(4) = 5e-76
Identities = 16/23 (69%), Positives = 21/23 (91%)
Frame = +1
Query: 874 GGYGLIIPKENGKAEKLKPLTVD 942
GGYGLIIPK++GKAEK++PL +
Sbjct: 334 GGYGLIIPKKDGKAEKVEPLPTE 356
>ref|XP_002872116.1| hypothetical protein ARALYDRAFT_489312 [Arabidopsis lyrata subsp.
lyrata] gi|297317953|gb|EFH48375.1| hypothetical protein
ARALYDRAFT_489312 [Arabidopsis lyrata subsp. lyrata]
Length = 308
Score = 131 bits (329), Expect(4) = 5e-76
Identities = 65/88 (73%), Positives = 73/88 (82%)
Frame = +2
Query: 245 RGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAESMFGSIDLAASIIQRKLRKIKEKDSDH 424
RGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAE+++ IDL ++IIQRKLRKIKEKDSDH
Sbjct: 126 RGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYACIDLVSTIIQRKLRKIKEKDSDH 185
Query: 425 GRHMKGFDRLTFPEAGTLTVDESLDTVT 508
GRHMKGF+RL E V E ++ T
Sbjct: 186 GRHMKGFNRLKVREPVIEPVVEDVEDST 213
Score = 92.8 bits (229), Expect(4) = 5e-76
Identities = 43/54 (79%), Positives = 50/54 (92%)
Frame = +3
Query: 9 RMAWDGPLSSVKLILQGKNFELSPAVKTHVEEKLGKAVQKHSHLVREVDVRLSV 170
+M+WDGPL+SVKLI+QGKN ELS +K HVEEK+GK+VQKHSHLVREVDVRLSV
Sbjct: 72 KMSWDGPLASVKLIIQGKNLELSEPIKQHVEEKVGKSVQKHSHLVREVDVRLSV 125
Score = 91.3 bits (225), Expect(4) = 5e-76
Identities = 42/55 (76%), Positives = 49/55 (89%)
Frame = +3
Query: 630 DKAEDIANEIVRTKYFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINIVYKRK 794
++ +D+ EIVRTK FEMPPLTV+EA+EQLE V HDFYGF+NEETGEINIVYKRK
Sbjct: 221 EEEDDLIKEIVRTKTFEMPPLTVAEAVEQLELVSHDFYGFQNEETGEINIVYKRK 275
Score = 39.3 bits (90), Expect(4) = 5e-76
Identities = 16/23 (69%), Positives = 21/23 (91%)
Frame = +1
Query: 874 GGYGLIIPKENGKAEKLKPLTVD 942
GGYGLIIPK++GKAEK++PL +
Sbjct: 277 GGYGLIIPKKDGKAEKVEPLPTE 299
>ref|NP_568447.1| putative 30S ribosomal protein [Arabidopsis thaliana]
gi|13877771|gb|AAK43963.1|AF370148_1 unknown protein
[Arabidopsis thaliana] gi|29824163|gb|AAP04042.1|
unknown protein [Arabidopsis thaliana]
gi|332005933|gb|AED93316.1| putative 30S ribosomal
protein [Arabidopsis thaliana]
Length = 308
Score = 131 bits (329), Expect(4) = 5e-76
Identities = 65/88 (73%), Positives = 73/88 (82%)
Frame = +2
Query: 245 RGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAESMFGSIDLAASIIQRKLRKIKEKDSDH 424
RGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAE+++ IDL ++IIQRKLRKIKEKDSDH
Sbjct: 126 RGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYACIDLVSTIIQRKLRKIKEKDSDH 185
Query: 425 GRHMKGFDRLTFPEAGTLTVDESLDTVT 508
GRHMKGF+RL E V E ++ T
Sbjct: 186 GRHMKGFNRLKVREPVIEPVVEDVEDST 213
Score = 92.8 bits (229), Expect(4) = 5e-76
Identities = 43/54 (79%), Positives = 50/54 (92%)
Frame = +3
Query: 9 RMAWDGPLSSVKLILQGKNFELSPAVKTHVEEKLGKAVQKHSHLVREVDVRLSV 170
+M+WDGPL+SVKLI+QGKN ELS +K HVEEK+GK+VQKHSHLVREVDVRLSV
Sbjct: 72 KMSWDGPLASVKLIIQGKNLELSEPIKQHVEEKVGKSVQKHSHLVREVDVRLSV 125
Score = 91.3 bits (225), Expect(4) = 5e-76
Identities = 42/55 (76%), Positives = 49/55 (89%)
Frame = +3
Query: 630 DKAEDIANEIVRTKYFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINIVYKRK 794
++ +D+ EIVRTK FEMPPLTV+EA+EQLE V HDFYGF+NEETGEINIVYKRK
Sbjct: 221 EEEDDLIKEIVRTKTFEMPPLTVAEAVEQLELVSHDFYGFQNEETGEINIVYKRK 275
Score = 39.3 bits (90), Expect(4) = 5e-76
Identities = 16/23 (69%), Positives = 21/23 (91%)
Frame = +1
Query: 874 GGYGLIIPKENGKAEKLKPLTVD 942
GGYGLIIPK++GKAEK++PL +
Sbjct: 277 GGYGLIIPKKDGKAEKVEPLPTE 299