BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cephaelis21_contig00008431
         (815 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAC63844.1| putative non-LTR retroelement reverse transcripta...   192   1e-46
dbj|BAB09815.1| non-LTR retroelement reverse transcriptase-like ...   188   1e-45
gb|AAC26674.1| putative non-LTR retroelement reverse transcripta...   187   3e-45
gb|AAF23831.1|AC007234_3 F1E22.12 [Arabidopsis thaliana]              176   6e-42
sp|P0C2F6.1|RNHX1_ARATH RecName: Full=Putative ribonuclease H pr...   176   6e-42

>gb|AAC63844.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1231

 Score =  192 bits (487), Expect = 1e-46
 Identities = 104/276 (37%), Positives = 147/276 (53%), Gaps = 5/276 (1%)
 Frame = -1

Query: 815  WKGSANGRFSTGKAYNNLSKHLWDPPSIDA--STIWKIVCPQRVKSFLWLAMKQKLMTND 642
            WKG+ +G F+   AY+ L   + D P++ +  + IWK++ P+RV+ F+WL  +  +MTN 
Sbjct: 872  WKGTQDGAFTVRSAYSLLQGDVGDRPNMGSFFNRIWKLITPERVRVFIWLVSQNVIMTNV 931

Query: 641  NRVKMRLTDNSECSECGHALEDTLHVLRDCPKAREVWLSILPRNEQHEFFALLWEDWFRL 462
             RV+  L++N+ CS C  A E  LHVLRDCP    +W  +LP    HEFF+    +W   
Sbjct: 932  ERVRRHLSENAICSVCNGAEETILHVLRDCPAMEPIWRRLLPLRRHHEFFSQSLLEWLFT 991

Query: 461  NIHRTATMQDSRVQWNTLFATVCWLLWKRRNDQVFNGERASSSVIMTQAWTIAKHAVEGL 282
            N      M   +  W TLF    W  WK R   VF GER     I        K   E +
Sbjct: 992  N------MDPVKGIWPTLFGMGIWWAWKWRCCDVF-GERK----ICRDRLKFIKDMAEEV 1040

Query: 281  MQEH---LSTGPSTNLRQREGKWKKPPEGWIKLNSDGGRNSTTGWATAGGVIRDHEGRWI 111
             + H   +   P+    +R  +W+ P +GW+K+ +DG      G A AGG IR+ +G W+
Sbjct: 1041 RRVHVGAVGNRPNGVRVERMIRWQVPSDGWVKITTDGASRGNHGLAAAGGAIRNGQGEWL 1100

Query: 110  CGFRRVIGCCDVLQAELWGCYDGLQLAWERGFRQVE 3
             GF   IG C    AELWG Y GL +AW++GFR+VE
Sbjct: 1101 GGFALNIGSCAAPLAELWGAYYGLLIAWDKGFRRVE 1136


>dbj|BAB09815.1| non-LTR retroelement reverse transcriptase-like [Arabidopsis
            thaliana]
          Length = 676

 Score =  188 bits (477), Expect = 1e-45
 Identities = 103/278 (37%), Positives = 141/278 (50%), Gaps = 8/278 (2%)
 Frame = -1

Query: 815  WKGSANGRFSTGKAY-----NNLSKHLWDPPSIDASTIWKIVCPQRVKSFLWLAMKQKLM 651
            W G+ NGRF+   AY     + +SK      S     +W+++ P+R + FLWL   Q ++
Sbjct: 313  WVGTENGRFTVSSAYLIQSVDEISKQCM---SRFFDRVWRVMVPERARIFLWLVGNQVVL 369

Query: 650  TNDNRVKMRLTDNSECSECGHALEDTLHVLRDCPKAREVWLSILPRNEQHEFFALLWEDW 471
            TN  RV+  + D+  C  C  A E  +HVLRDCP    +W+ ++P  EQ  FF     +W
Sbjct: 370  TNAERVRRHMADSDVCPLCKGASESLIHVLRDCPAMMGIWMRVVPVMEQRRFFETSLLEW 429

Query: 470  FRLNIHRTATMQDSRVQWNTLFATVCWLLWKRRNDQVFNGERASSSVIMTQAWTIAKHAV 291
               N+   +  +  R  W TLFA   W  WK R   VF  +      +        K AV
Sbjct: 430  MYGNLKERSDSE--RRSWPTLFALTVWWGWKWRCGYVFGEDSRCRDRVK-----FLKSAV 482

Query: 290  EGLMQEHLSTGPSTN---LRQREGKWKKPPEGWIKLNSDGGRNSTTGWATAGGVIRDHEG 120
              +   HL+         L +R   W+KP EGW+ +N+DG  +   G ATAGGVIRD  G
Sbjct: 483  AEVEAAHLAANGDAREDVLVERMIAWRKPAEGWVTMNTDGASHGNPGQATAGGVIRDEHG 542

Query: 119  RWICGFRRVIGCCDVLQAELWGCYDGLQLAWERGFRQV 6
             W+ GF   IG C    AELWG Y GL +AWERG+R+V
Sbjct: 543  SWLVGFALNIGVCSAPLAELWGVYYGLVVAWERGWRRV 580


>gb|AAC26674.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 970

 Score =  187 bits (474), Expect = 3e-45
 Identities = 105/276 (38%), Positives = 144/276 (52%), Gaps = 5/276 (1%)
 Frame = -1

Query: 815  WKGSANGRFSTGKAYNNLSKHLWDPPSIDA--STIWKIVCPQRVKSFLWLAMKQKLMTND 642
            WKG+ NG F+   AY  L     + P I +    IWK+V P+RV+ F+WL     +MTN 
Sbjct: 613  WKGTQNGDFTVRSAYELLKPEAEERPLIGSFLKQIWKLVAPERVRVFIWLVSHMVIMTNV 672

Query: 641  NRVKMRLTDNSECSECGHALEDTLHVLRDCPKAREVWLSILPRNEQHEFFALLWEDWFRL 462
             RV+  L+D + CS C  A E  LHVLRDCP    +W  +LP+  Q+EFF+    +W   
Sbjct: 673  ERVRRHLSDIATCSVCNGADESILHVLRDCPAMTPIWQRLLPQRRQNEFFSQF--EWLFT 730

Query: 461  NIHRTATMQDSRVQWNTLFATVCWLLWKRRNDQVFNGERASSSVIMTQAWTIAKHAVEGL 282
            N      +  ++  W TLF+   W  WK R   VF GER     +        K   E +
Sbjct: 731  N------LDPAKGDWPTLFSMGIWWAWKWRCGDVF-GERK----LCRDRLKFIKDIAEEV 779

Query: 281  MQEHLSTGPSTNLR---QREGKWKKPPEGWIKLNSDGGRNSTTGWATAGGVIRDHEGRWI 111
             + H+ T  +   R   +R  +WK P + W+KL +DG      G A A G I + +G W+
Sbjct: 780  RKAHVGTLNNHVKRARVERMIRWKAPSDRWVKLTTDGASRGHQGLAAASGAILNLQGEWL 839

Query: 110  CGFRRVIGCCDVLQAELWGCYDGLQLAWERGFRQVE 3
             GF   IG CD   AELWG Y GL +AW++GFR+VE
Sbjct: 840  GGFALNIGSCDAPLAELWGAYYGLLIAWDKGFRRVE 875


>gb|AAF23831.1|AC007234_3 F1E22.12 [Arabidopsis thaliana]
          Length = 1055

 Score =  176 bits (446), Expect = 6e-42
 Identities = 94/274 (34%), Positives = 142/274 (51%), Gaps = 3/274 (1%)
 Frame = -1

Query: 815  WKGSANGRFSTGKAYNNLSKHLWDPPSIDA--STIWKIVCPQRVKSFLWLAMKQKLMTND 642
            WK S +G+FS   AY  L+      P++ +  + +WK+  P+RVK+FLWL   Q +MT +
Sbjct: 366  WKFSQDGQFSVRSAYEMLTVDEVPRPNMASFFNCLWKVRVPERVKTFLWLVGNQAVMTEE 425

Query: 641  NRVKMRLTDNSECSECGHALEDTLHVLRDCPKAREVWLSILPRNEQHEFFALLWEDWFRL 462
             R +  L+ ++ C  C   +E  LHVLRDCP    +W+ ++P+  Q  FF+    +W   
Sbjct: 426  ERHRRHLSASNVCQVCKGGVESMLHVLRDCPAQLGIWVRVVPQRRQQGFFSKSLFEWLYD 485

Query: 461  NIHRTATMQDSRVQWNTLFATVCWLLWKRRNDQVFN-GERASSSVIMTQAWTIAKHAVEG 285
            N+   +  +D  + W+T+FA + W  WK R   +F    +    V   + W +  +    
Sbjct: 486  NLGDRSGCED--IPWSTIFAVIIWWGWKWRCGNIFGENTKCRDRVKFVKEWAVEVYRAHS 543

Query: 284  LMQEHLSTGPSTNLRQREGKWKKPPEGWIKLNSDGGRNSTTGWATAGGVIRDHEGRWICG 105
                ++  G +    +R   W  P  GW+K+N+DG      G A+AGGV+RD  G W  G
Sbjct: 544  ---GNVLVGITQPRVERMIGWVSPCVGWVKVNTDGASRGNPGLASAGGVLRDCTGAWCGG 600

Query: 104  FRRVIGCCDVLQAELWGCYDGLQLAWERGFRQVE 3
            F   IG C   QAELWG Y GL  AWE+   +VE
Sbjct: 601  FSLNIGRCSAPQAELWGVYYGLYFAWEKKVPRVE 634


>sp|P0C2F6.1|RNHX1_ARATH RecName: Full=Putative ribonuclease H protein At1g65750
          Length = 620

 Score =  176 bits (446), Expect = 6e-42
 Identities = 94/274 (34%), Positives = 142/274 (51%), Gaps = 3/274 (1%)
 Frame = -1

Query: 815  WKGSANGRFSTGKAYNNLSKHLWDPPSIDA--STIWKIVCPQRVKSFLWLAMKQKLMTND 642
            WK S +G+FS   AY  L+      P++ +  + +WK+  P+RVK+FLWL   Q +MT +
Sbjct: 257  WKFSQDGQFSVRSAYEMLTVDEVPRPNMASFFNCLWKVRVPERVKTFLWLVGNQAVMTEE 316

Query: 641  NRVKMRLTDNSECSECGHALEDTLHVLRDCPKAREVWLSILPRNEQHEFFALLWEDWFRL 462
             R +  L+ ++ C  C   +E  LHVLRDCP    +W+ ++P+  Q  FF+    +W   
Sbjct: 317  ERHRRHLSASNVCQVCKGGVESMLHVLRDCPAQLGIWVRVVPQRRQQGFFSKSLFEWLYD 376

Query: 461  NIHRTATMQDSRVQWNTLFATVCWLLWKRRNDQVFN-GERASSSVIMTQAWTIAKHAVEG 285
            N+   +  +D  + W+T+FA + W  WK R   +F    +    V   + W +  +    
Sbjct: 377  NLGDRSGCED--IPWSTIFAVIIWWGWKWRCGNIFGENTKCRDRVKFVKEWAVEVYRAHS 434

Query: 284  LMQEHLSTGPSTNLRQREGKWKKPPEGWIKLNSDGGRNSTTGWATAGGVIRDHEGRWICG 105
                ++  G +    +R   W  P  GW+K+N+DG      G A+AGGV+RD  G W  G
Sbjct: 435  ---GNVLVGITQPRVERMIGWVSPCVGWVKVNTDGASRGNPGLASAGGVLRDCTGAWCGG 491

Query: 104  FRRVIGCCDVLQAELWGCYDGLQLAWERGFRQVE 3
            F   IG C   QAELWG Y GL  AWE+   +VE
Sbjct: 492  FSLNIGRCSAPQAELWGVYYGLYFAWEKKVPRVE 525