BLASTX nr result
ID: Cephaelis21_contig00008091
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cephaelis21_contig00008091
(1491 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_003549365.1| PREDICTED: RNA pseudourine synthase 3, mitoc... 553 e-179
ref|XP_004158518.1| PREDICTED: RNA pseudourine synthase 3, mitoc... 543 e-178
ref|XP_004138653.1| PREDICTED: RNA pseudourine synthase 3, mitoc... 542 e-178
gb|EAZ43360.1| hypothetical protein OsJ_27960 [Oryza sativa Japo... 516 e-164
ref|NP_001062265.1| Os08g0520100 [Oryza sativa Japonica Group] g... 516 e-164
>ref|XP_003549365.1| PREDICTED: RNA pseudourine synthase 3, mitochondrial-like [Glycine
max]
Length = 554
Score = 553 bits (1425), Expect(2) = e-179
Identities = 270/375 (72%), Positives = 318/375 (84%), Gaps = 1/375 (0%)
Frame = -3
Query: 1174 FLQVQVQVKCLDSNLQGM-QLKSMRKINHNEVMEEGVRISVPVSVAEAKISKRFDIIPSG 998
F + VQ++ DS+ Q Q+K MRKI NEVM+ G R+ VPVS+ E +ISKR+D IPSG
Sbjct: 183 FREGLVQMEADDSSTQKEEQMKPMRKIRPNEVMKRGARVHVPVSICETRISKRYDAIPSG 242
Query: 997 TLYPNADEINYLQRLVIYKDSAIIVLNKPPKLPVKGNLPIHNSMDALAAAALSYDCEEGP 818
TLYPNADEI YLQRLVIYKDSAIIVLNKPPKLPVKG+LP+HNSMDALAAAALSYD +EGP
Sbjct: 243 TLYPNADEIKYLQRLVIYKDSAIIVLNKPPKLPVKGSLPVHNSMDALAAAALSYDYDEGP 302
Query: 817 KLVHRLDRESSGLLLMGRTKESISYLHLLFSDINKSKSLSKAWGDACESAYQRYWALVIG 638
KLVHRLDRESSG+LL+GRTK+S+S+L LFS+IN +KS K W +ACE+ YQRYWALVIG
Sbjct: 303 KLVHRLDRESSGILLLGRTKDSVSHLQWLFSNINNAKSSCKDWNEACEATYQRYWALVIG 362
Query: 637 SPKDKEGLISAPLTKIVLDDGKTERVILANGSGLEASQEAITEYRVLGPMINGCSWMELR 458
+PK+KEG+I APL+K++L+DGKTER+ILA+ S +E QEA+TEYRVLGP INGCSW+ELR
Sbjct: 363 TPKEKEGIIHAPLSKVLLNDGKTERIILAHHSSVEPRQEAVTEYRVLGPQINGCSWVELR 422
Query: 457 PLTSRKHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRIDFEPISGERYRMRRPEGLD 278
PLT RKHQLRVHCAEALGTPIVGDYKYGWFVH RWKQMPR+D EP +G+ Y++RRPEGLD
Sbjct: 423 PLTYRKHQLRVHCAEALGTPIVGDYKYGWFVHSRWKQMPRVDIEPTTGKPYKLRRPEGLD 482
Query: 277 VQKGSVLSKVPLLHLHYRETILPNIEKFIEFHNSKSLGSNHPSKLKYGSKPDLLRFVASM 98
VQKGSVLSKVPLLHLH RE +LPNI KF+ N+ S+ + +PD+LRFVA+M
Sbjct: 483 VQKGSVLSKVPLLHLHCRELVLPNIVKFMHVLNN----SSEELRTSLREQPDVLRFVATM 538
Query: 97 PSHMKISWNLMSSYL 53
PSHM+ISWNLMSSYL
Sbjct: 539 PSHMRISWNLMSSYL 553
Score = 103 bits (256), Expect(2) = e-179
Identities = 48/79 (60%), Positives = 63/79 (79%), Gaps = 5/79 (6%)
Frame = -1
Query: 1488 VIRVTNNVAHLGSPKQGPKPRQLLSLPPFPGQPLPGKNSSTG-----HVTAISWLKYYFY 1324
VI V+NN+A L +PK+GPKPRQLLSLPPFPG PLP K+S +G +VTA++W+KYYF
Sbjct: 113 VISVSNNIARLDAPKEGPKPRQLLSLPPFPGHPLPDKSSISGSRQRDYVTAVNWIKYYFK 172
Query: 1323 DIPGNVIQSHFNKGLVQVQ 1267
G+VI+SHF +GLVQ++
Sbjct: 173 GTWGSVIESHFREGLVQME 191
>ref|XP_004158518.1| PREDICTED: RNA pseudourine synthase 3, mitochondrial-like [Cucumis
sativus]
Length = 471
Score = 543 bits (1398), Expect(2) = e-178
Identities = 272/373 (72%), Positives = 307/373 (82%), Gaps = 4/373 (1%)
Frame = -3
Query: 1159 VQVKCLDSNLQGMQ----LKSMRKINHNEVMEEGVRISVPVSVAEAKISKRFDIIPSGTL 992
VQV+C L G+ LK MRKI E+ME G RI +PVSVAE K+++RFD IPSGTL
Sbjct: 105 VQVEC--PQLGGLDEKGNLKPMRKIRSGEIMETGARIHLPVSVAEMKVARRFDTIPSGTL 162
Query: 991 YPNADEINYLQRLVIYKDSAIIVLNKPPKLPVKGNLPIHNSMDALAAAALSYDCEEGPKL 812
YPNADEI YLQRLV YKDSAIIVLNKPPKLPVKG LP+HNSMDALA AALSYD ++GPKL
Sbjct: 163 YPNADEIKYLQRLVKYKDSAIIVLNKPPKLPVKGTLPVHNSMDALADAALSYDYDDGPKL 222
Query: 811 VHRLDRESSGLLLMGRTKESISYLHLLFSDINKSKSLSKAWGDACESAYQRYWALVIGSP 632
VHRLDRESSG+LLMGRTKES+ +L LFS+I +K KAW +AC + YQ+YWALVIG P
Sbjct: 223 VHRLDRESSGILLMGRTKESVDHLQWLFSNIRNAKFTCKAWEEACNATYQKYWALVIGCP 282
Query: 631 KDKEGLISAPLTKIVLDDGKTERVILANGSGLEASQEAITEYRVLGPMINGCSWMELRPL 452
+++EG+ISAPL+K++LDDGKTERVILAN + +EASQEAITEYRVLGP INGCSW+EL P
Sbjct: 283 REREGVISAPLSKVLLDDGKTERVILANKASIEASQEAITEYRVLGPTINGCSWIELCPR 342
Query: 451 TSRKHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRIDFEPISGERYRMRRPEGLDVQ 272
TSRKHQLR+HCAEALGTPIVGDYKYGWFVHRRWKQMPR+D EPISG Y++RRPEGLDVQ
Sbjct: 343 TSRKHQLRIHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDVEPISGRPYKLRRPEGLDVQ 402
Query: 271 KGSVLSKVPLLHLHYRETILPNIEKFIEFHNSKSLGSNHPSKLKYGSKPDLLRFVASMPS 92
KGSVLSKVPLLHLH RE +LPNI KF+ K G N P DLLRFVA MPS
Sbjct: 403 KGSVLSKVPLLHLHCRELVLPNIAKFLNVFYGK--GPNRPVS---SFDSDLLRFVARMPS 457
Query: 91 HMKISWNLMSSYL 53
HM+ISWNLMSSYL
Sbjct: 458 HMRISWNLMSSYL 470
Score = 110 bits (275), Expect(2) = e-178
Identities = 53/79 (67%), Positives = 62/79 (78%), Gaps = 5/79 (6%)
Frame = -1
Query: 1488 VIRVTNNVAHLGSPKQGPKPRQLLSLPPFPGQPLPGKN-----SSTGHVTAISWLKYYFY 1324
+IRV+NN+A LGSPK+GPK RQLLSLPPFPG PLPGKN + HVTAI W+KYYF
Sbjct: 30 IIRVSNNIAQLGSPKEGPKARQLLSLPPFPGYPLPGKNQVGVSGESTHVTAIRWVKYYFD 89
Query: 1323 DIPGNVIQSHFNKGLVQVQ 1267
+I + IQSHF KGLVQV+
Sbjct: 90 EIQDSQIQSHFRKGLVQVE 108
>ref|XP_004138653.1| PREDICTED: RNA pseudourine synthase 3, mitochondrial-like [Cucumis
sativus]
Length = 471
Score = 542 bits (1397), Expect(2) = e-178
Identities = 271/373 (72%), Positives = 307/373 (82%), Gaps = 4/373 (1%)
Frame = -3
Query: 1159 VQVKCLDSNLQGMQ----LKSMRKINHNEVMEEGVRISVPVSVAEAKISKRFDIIPSGTL 992
VQV+C L G+ LK MRKI E+ME G RI +PVSVAE K+++RFD IPSGTL
Sbjct: 105 VQVEC--PQLGGLDEKGNLKPMRKIRSGEIMETGARIHLPVSVAEMKVARRFDTIPSGTL 162
Query: 991 YPNADEINYLQRLVIYKDSAIIVLNKPPKLPVKGNLPIHNSMDALAAAALSYDCEEGPKL 812
YPNADEI YLQRLV YKDSAIIVLNKPPKLPVKG LP+HNSMDALA AALSYD ++GPKL
Sbjct: 163 YPNADEIKYLQRLVKYKDSAIIVLNKPPKLPVKGTLPVHNSMDALADAALSYDYDDGPKL 222
Query: 811 VHRLDRESSGLLLMGRTKESISYLHLLFSDINKSKSLSKAWGDACESAYQRYWALVIGSP 632
VHRLDRESSG+LLMGRTKES+ +L LFS+I +K KAW +AC + YQ+YWALVIG P
Sbjct: 223 VHRLDRESSGILLMGRTKESVDHLQWLFSNIRNAKFTCKAWEEACNATYQKYWALVIGCP 282
Query: 631 KDKEGLISAPLTKIVLDDGKTERVILANGSGLEASQEAITEYRVLGPMINGCSWMELRPL 452
+++EG+ISAPL+K++LDDGKTERV+LAN + +EASQEAITEYRVLGP INGCSW+EL P
Sbjct: 283 REREGVISAPLSKVLLDDGKTERVVLANKASIEASQEAITEYRVLGPTINGCSWIELCPR 342
Query: 451 TSRKHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRIDFEPISGERYRMRRPEGLDVQ 272
TSRKHQLR+HCAEALGTPIVGDYKYGWFVHRRWKQMPR+D EPISG Y++RRPEGLDVQ
Sbjct: 343 TSRKHQLRIHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDVEPISGRPYKLRRPEGLDVQ 402
Query: 271 KGSVLSKVPLLHLHYRETILPNIEKFIEFHNSKSLGSNHPSKLKYGSKPDLLRFVASMPS 92
KGSVLSKVPLLHLH RE +LPNI KF+ K G N P DLLRFVA MPS
Sbjct: 403 KGSVLSKVPLLHLHCRELVLPNIAKFLNVFYGK--GPNRPVS---SFDSDLLRFVARMPS 457
Query: 91 HMKISWNLMSSYL 53
HM+ISWNLMSSYL
Sbjct: 458 HMRISWNLMSSYL 470
Score = 110 bits (275), Expect(2) = e-178
Identities = 53/79 (67%), Positives = 62/79 (78%), Gaps = 5/79 (6%)
Frame = -1
Query: 1488 VIRVTNNVAHLGSPKQGPKPRQLLSLPPFPGQPLPGKN-----SSTGHVTAISWLKYYFY 1324
+IRV+NN+A LGSPK+GPK RQLLSLPPFPG PLPGKN + HVTAI W+KYYF
Sbjct: 30 IIRVSNNIAQLGSPKEGPKARQLLSLPPFPGYPLPGKNQVGVSGESTHVTAIRWVKYYFD 89
Query: 1323 DIPGNVIQSHFNKGLVQVQ 1267
+I + IQSHF KGLVQV+
Sbjct: 90 EIQDSQIQSHFRKGLVQVE 108
>gb|EAZ43360.1| hypothetical protein OsJ_27960 [Oryza sativa Japonica Group]
Length = 509
Score = 516 bits (1329), Expect(2) = e-164
Identities = 250/374 (66%), Positives = 307/374 (82%), Gaps = 5/374 (1%)
Frame = -3
Query: 1159 VQVKCLDSNLQGMQLKS----MRKINHNEVMEEGVRISVPVSVAEAKISKRFDIIPSGTL 992
V +C D + +KS ++KI HN+VME G+RI +PVSVAE +I KR++ IP+ TL
Sbjct: 140 VYSECSDHEVSVETIKSQKHHLKKIKHNDVMEPGMRIHLPVSVAEGEIKKRYETIPTATL 199
Query: 991 YPNADEINYLQRLVIYKDSAIIVLNKPPKLPVKGNLPIHNSMDALAAAALSYDCEEGPKL 812
+PN DEI YL+RLVI+KDSAI+VLNKPPK+P+KGNLP+HNSMD LAAAALSY EEGPKL
Sbjct: 200 HPNKDEIEYLRRLVIHKDSAILVLNKPPKVPMKGNLPVHNSMDVLAAAALSYGNEEGPKL 259
Query: 811 VHRLDRESSGLLLMGRTKESISYLHLLFSDINKSKSLSKAWGDACESAYQRYWALVIGSP 632
VHRLDRESSGLLL GRTKES + LH LF+ +N +K+ S+ W ACE+ QRYWALVIG+P
Sbjct: 260 VHRLDRESSGLLLFGRTKESFTRLHWLFTSVNLAKTNSQVWNAACEAYMQRYWALVIGTP 319
Query: 631 KDKEGLISAPLTKIVLDDGKTERVILANGSGLEASQEAITEYRVLGPMINGCSWMELRPL 452
K++EG+ISAPL+K++LDDGK ERVILA+ SG++ +QEA+T YRV+GP I+GCSW+ELRPL
Sbjct: 320 KEREGIISAPLSKVLLDDGKAERVILAHPSGIDGAQEAVTAYRVMGPTIHGCSWIELRPL 379
Query: 451 TSRKHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRIDFEPISGERYRMRRPEGLDVQ 272
T RKHQLRVHCAEALGTPIVGDYKYGWFVH+RWKQ P+ DFEP +GE Y++RRPEGL++Q
Sbjct: 380 TGRKHQLRVHCAEALGTPIVGDYKYGWFVHQRWKQNPQPDFEPFTGEPYKLRRPEGLEIQ 439
Query: 271 KGSVLSKVPLLHLHYRETILPNIEKFIEFHNSKSLGSNHPSKLKYG-SKPDLLRFVASMP 95
KGSVLSKVPLLHLH RE ++PNI KF+ S G H + + KP+LLRF+A MP
Sbjct: 440 KGSVLSKVPLLHLHCREMVIPNIAKFL-----SSNGEWHENGAPWSKEKPNLLRFIAPMP 494
Query: 94 SHMKISWNLMSSYL 53
+HMKISWN+MSSYL
Sbjct: 495 AHMKISWNIMSSYL 508
Score = 89.7 bits (221), Expect(2) = e-164
Identities = 46/77 (59%), Positives = 57/77 (74%), Gaps = 6/77 (7%)
Frame = -1
Query: 1488 VIRVT-NNVAHLGSPKQGPKPRQLLSLPPFP----GQPLPG-KNSSTGHVTAISWLKYYF 1327
V+RV +NVA LG PK GP+PRQLLSLPPFP G PLPG K ++ VTA+SW+K+Y
Sbjct: 64 VVRVDGSNVARLGKPKPGPRPRQLLSLPPFPGGGDGDPLPGRKAAAPRRVTAVSWVKHYL 123
Query: 1326 YDIPGNVIQSHFNKGLV 1276
D+P V+Q+HFNK LV
Sbjct: 124 ADVPQEVVQAHFNKRLV 140
>ref|NP_001062265.1| Os08g0520100 [Oryza sativa Japonica Group]
gi|122234516|sp|Q0J4D4.1|PUS3_ORYSJ RecName: Full=RNA
pseudourine synthase 3, mitochondrial; AltName: Full=RNA
pseudouridylate synthase 3; AltName: Full=RNA-uridine
isomerase 3; Flags: Precursor
gi|113624234|dbj|BAF24179.1| Os08g0520100 [Oryza sativa
Japonica Group] gi|125562210|gb|EAZ07658.1| hypothetical
protein OsI_29911 [Oryza sativa Indica Group]
Length = 475
Score = 516 bits (1329), Expect(2) = e-164
Identities = 250/374 (66%), Positives = 307/374 (82%), Gaps = 5/374 (1%)
Frame = -3
Query: 1159 VQVKCLDSNLQGMQLKS----MRKINHNEVMEEGVRISVPVSVAEAKISKRFDIIPSGTL 992
V +C D + +KS ++KI HN+VME G+RI +PVSVAE +I KR++ IP+ TL
Sbjct: 106 VYSECSDHEVSVETIKSQKHHLKKIKHNDVMEPGMRIHLPVSVAEGEIKKRYETIPTATL 165
Query: 991 YPNADEINYLQRLVIYKDSAIIVLNKPPKLPVKGNLPIHNSMDALAAAALSYDCEEGPKL 812
+PN DEI YL+RLVI+KDSAI+VLNKPPK+P+KGNLP+HNSMD LAAAALSY EEGPKL
Sbjct: 166 HPNKDEIEYLRRLVIHKDSAILVLNKPPKVPMKGNLPVHNSMDVLAAAALSYGNEEGPKL 225
Query: 811 VHRLDRESSGLLLMGRTKESISYLHLLFSDINKSKSLSKAWGDACESAYQRYWALVIGSP 632
VHRLDRESSGLLL GRTKES + LH LF+ +N +K+ S+ W ACE+ QRYWALVIG+P
Sbjct: 226 VHRLDRESSGLLLFGRTKESFTRLHWLFTSVNLAKTNSQVWNAACEAYMQRYWALVIGTP 285
Query: 631 KDKEGLISAPLTKIVLDDGKTERVILANGSGLEASQEAITEYRVLGPMINGCSWMELRPL 452
K++EG+ISAPL+K++LDDGK ERVILA+ SG++ +QEA+T YRV+GP I+GCSW+ELRPL
Sbjct: 286 KEREGIISAPLSKVLLDDGKAERVILAHPSGIDGAQEAVTAYRVMGPTIHGCSWIELRPL 345
Query: 451 TSRKHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRIDFEPISGERYRMRRPEGLDVQ 272
T RKHQLRVHCAEALGTPIVGDYKYGWFVH+RWKQ P+ DFEP +GE Y++RRPEGL++Q
Sbjct: 346 TGRKHQLRVHCAEALGTPIVGDYKYGWFVHQRWKQNPQPDFEPFTGEPYKLRRPEGLEIQ 405
Query: 271 KGSVLSKVPLLHLHYRETILPNIEKFIEFHNSKSLGSNHPSKLKYG-SKPDLLRFVASMP 95
KGSVLSKVPLLHLH RE ++PNI KF+ S G H + + KP+LLRF+A MP
Sbjct: 406 KGSVLSKVPLLHLHCREMVIPNIAKFL-----SSNGEWHENGAPWSKEKPNLLRFIAPMP 460
Query: 94 SHMKISWNLMSSYL 53
+HMKISWN+MSSYL
Sbjct: 461 AHMKISWNIMSSYL 474
Score = 89.7 bits (221), Expect(2) = e-164
Identities = 46/77 (59%), Positives = 57/77 (74%), Gaps = 6/77 (7%)
Frame = -1
Query: 1488 VIRVT-NNVAHLGSPKQGPKPRQLLSLPPFP----GQPLPG-KNSSTGHVTAISWLKYYF 1327
V+RV +NVA LG PK GP+PRQLLSLPPFP G PLPG K ++ VTA+SW+K+Y
Sbjct: 30 VVRVDGSNVARLGKPKPGPRPRQLLSLPPFPGGGDGDPLPGRKAAAPRRVTAVSWVKHYL 89
Query: 1326 YDIPGNVIQSHFNKGLV 1276
D+P V+Q+HFNK LV
Sbjct: 90 ADVPQEVVQAHFNKRLV 106