BLASTX nr result
ID: Cephaelis21_contig00004102
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cephaelis21_contig00004102
(1372 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAB82639.1| putative non-LTR retroelement reverse transcripta... 93 4e-32
gb|AFP55574.1| non-ltr retroelement reverse transcriptase [Rosa ... 86 7e-31
emb|CAN67932.1| hypothetical protein VITISV_013913 [Vitis vinifera] 81 8e-30
dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like ... 84 2e-29
gb|AAN04214.1| Putative retroelement [Oryza sativa Japonica Grou... 89 2e-29
>gb|AAB82639.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1374
Score = 92.8 bits (229), Expect(2) = 4e-32
Identities = 45/144 (31%), Positives = 79/144 (54%)
Frame = +2
Query: 8 LRSSHFSILVNGVSAGFF*ASRGLKQGDPLSPLLFILLTEAMSRGLKHLVSTNRVQHYAL 187
++S + +L+NG G SRGL+QGDPLSP LF++ TE + + L+ N++ +
Sbjct: 610 VKSVRYQVLINGTPHGEIIPSRGLRQGDPLSPYLFVICTEMLVKMLQSAEQKNQITGLKV 669
Query: 188 YPGAPVITHLCFTDDLVIFTRANRRSVRELAAFLQIFEVASGQRINREKSDFILSRRCTT 367
GAP I+HL F DD + + + N ++ ++ ++ + +ASGQR+N KS + +
Sbjct: 670 ARGAPPISHLLFADDSMFYCKVNDEALGQIIRIIEEYSLASGQRVNYLKSSIYFGKHISE 729
Query: 368 HHSHILSQMLGIKRTAFTNALFGM 439
++ + LGI+R G+
Sbjct: 730 ERRCLVKRKLGIEREGGEGVYLGL 753
Score = 73.2 bits (178), Expect(2) = 4e-32
Identities = 64/330 (19%), Positives = 118/330 (35%), Gaps = 37/330 (11%)
Frame = +3
Query: 483 LLDKISHKLDAWKGQXXXXXXXXXXXXHVLQSLPVHTLAAMNPPRSILRQLEGFFVRFFW 662
L D++ K+ W+ V +LP +T++ P++I +Q+E F+W
Sbjct: 768 LKDRLGKKVLGWQSNFLSPGGKEILLKAVAMALPTYTMSCFKIPKTICQQIESVMAEFWW 827
Query: 663 GSQPEHTRQIWRSWDNLAYPVQEGGLGLRKLDTVLEAFFAK-LWWKIHHSLGIWAVYVNG 839
++ E W++W +L+ P GGLG ++++ A K LW I + A
Sbjct: 828 KNKKEGRGLHWKAWCHLSRPKAVGGLGFKEIEAFNIALLGKQLWRMITEKDSLMAKVFKS 887
Query: 840 VTWKR------------SFYRSRLQSVKHFVDIHFRICVGDGSS-NFWTANWLGTSPLLT 980
+ + SF + + + R +G+G + N WT W+G P
Sbjct: 888 RYFSKSDPLNAPLGSRPSFAWKSIYEAQVLIKQGIRAVIGNGETINVWTDPWIGAKPAKA 947
Query: 981 DGVTPSNPDLTLKEACSQEV-----------WQEDLFAMDLSNTALQKI*EMHCHFSDDQ 1127
+ ++ A S V W +L ++ + + I + + +
Sbjct: 948 AQAVKRSHLVSQYAANSIHVVKDLLLPDGRDWNWNLVSLLFPDNTQENILALRPGGKETR 1007
Query: 1128 D*FIWDLT------------PXXXXXXXXXXXXXXXXKEINPFMKWVWRSSVPLKMSILL 1271
D F W+ + ++P + +W+ VP K+ L
Sbjct: 1008 DRFTWEYSRSGHYSVKSGYWVMTEIINQRNNPQEVLQPSLDPIFQQIWKLDVPPKIHHFL 1067
Query: 1272 WRVLHGLLSTDDILQRMGFFLASKCPLCPS 1361
WR ++ LS L C CPS
Sbjct: 1068 WRCVNNCLSVASNLAYRHLAREKSCVRCPS 1097
>gb|AFP55574.1| non-ltr retroelement reverse transcriptase [Rosa rugosa]
Length = 1656
Score = 86.3 bits (212), Expect(2) = 7e-31
Identities = 46/130 (35%), Positives = 71/130 (54%)
Frame = +2
Query: 14 SSHFSILVNGVSAGFF*ASRGLKQGDPLSPLLFILLTEAMSRGLKHLVSTNRVQHYALYP 193
+S S+L+NG F SRGL+QGDPLSP LF+ + + +SR + + + + + P
Sbjct: 1221 TSSLSVLINGKPGPSFLPSRGLRQGDPLSPFLFLFVNDVLSRMINKMCQDSLLTPVTIGP 1280
Query: 194 GAPVITHLCFTDDLVIFTRANRRSVRELAAFLQIFEVASGQRINREKSDFILSRRCTTHH 373
++HL F DD + F RA ++ L+ L + +ASGQ IN EKS S
Sbjct: 1281 NNLPVSHLFFADDSLFFLRATLQNCETLSDLLHTYCIASGQLINVEKSSIFFSPNTPPEI 1340
Query: 374 SHILSQMLGI 403
+H+LS ++ I
Sbjct: 1341 AHLLSSIMQI 1350
Score = 75.5 bits (184), Expect(2) = 7e-31
Identities = 61/244 (25%), Positives = 104/244 (42%), Gaps = 24/244 (9%)
Frame = +3
Query: 420 PMPYLGCSLYQGRTRRLYFQPLLDKISHKLDAWKGQXXXXXXXXXXXXHVLQSLPVHTLA 599
P YLG + R+++ + D I K+ WK V ++P + +
Sbjct: 1356 PGTYLGLPTFWHRSKKKALGFIKDSILRKVKGWKQATLSQAGKEVLIKAVATAIPAYPMG 1415
Query: 600 AMNPPRSILRQLEGFFVRFFWGSQPEHTRQI-WRSWDNLAYPVQEGGLGLRKLDTVLEAF 776
P ++ ++L G F+WG+ TR I W+SWD LA P ++GG+G R L+ +
Sbjct: 1416 CFKFPSTLCKELNGILADFWWGNVD--TRGIHWKSWDFLARPKKDGGMGFRNLEDFNNSL 1473
Query: 777 FAKLWWKIHHS-LGIWAVYVNGVTWKRSFYR------------SRLQSVKHFVDIHFRIC 917
AK W++H + +WA + + + RS + + L ++F+
Sbjct: 1474 LAKQAWRLHQNPFALWARVLEQLYYPRSSFLEAPKGPNPSWIWNSLLIGRNFIHKEALWN 1533
Query: 918 VGDG-SSNFWTANWLGTSPLLTDGVTPSNPDLTLKEACSQ---------EVWQEDLFAMD 1067
+G+G S N NW+ + P PS L L E S+ + W+ D FA
Sbjct: 1534 IGNGFSVNIVGDNWIPSIP-------PSTVSLPLNEDNSRVCELINWDTKSWELDHFAET 1586
Query: 1068 LSNT 1079
++ T
Sbjct: 1587 ITPT 1590
>emb|CAN67932.1| hypothetical protein VITISV_013913 [Vitis vinifera]
Length = 2077
Score = 81.3 bits (199), Expect(2) = 8e-30
Identities = 53/156 (33%), Positives = 83/156 (53%)
Frame = +2
Query: 2 GNLRSSHFSILVNGVSAGFF*ASRGLKQGDPLSPLLFILLTEAMSRGLKHLVSTNRVQHY 181
G L S F++LVNG + G+ ASRGL+QGDPLSP LF ++ + +SR L + N ++ +
Sbjct: 1006 GCLSSVSFAVLVNGNAKGWVKASRGLRQGDPLSPFLFTIVADVLSRMLLKVEERNVLEGF 1065
Query: 182 ALYPGAPVITHLCFTDDLVIFTRANRRSVRELAAFLQIFEVASGQRINREKSDFILSRRC 361
+ ++HL F +D + F+ + L L +F SG ++N +KS+ I
Sbjct: 1066 RVGRNRTRVSHLQFANDTIFFSSTREEDMMTLKNVLLVFGHISGLKVNLDKSN-IYGINL 1124
Query: 362 TTHHSHILSQMLGIKRTAFTNALFGMFLVSGPNKKA 469
+H L++ML K AF + + L G N KA
Sbjct: 1125 EQNHLFRLAEMLDCK--AFGWPILYLCLPLGGNPKA 1158
Score = 77.0 bits (188), Expect(2) = 8e-30
Identities = 74/312 (23%), Positives = 113/312 (36%), Gaps = 30/312 (9%)
Frame = +3
Query: 471 YFQPLLDKISHKLDAWKGQXXXXXXXXXXXXHVLQSLPVHTLAAMNPPRSILRQLEGFFV 650
++ P++++IS +LD W+ L +P + L+ S+ ++E
Sbjct: 1161 FWDPVIERISRRLDGWQMAYLSFGGRITLIQSCLTHMPCYFLSLFKISASVAAKIERMQR 1220
Query: 651 RFFWGSQPEHTRQIWRSWDNLAYPVQEGGLGLRKLDTVLEAFFAKLWWKIHHS------- 809
F W S E R +WD + P GGLG K+ A K W+
Sbjct: 1221 DFLWSSVGEGKRDHLVNWDVVCKPKSRGGLGFGKISVRNIALLGKWLWRYPREGSALWHQ 1280
Query: 810 --LGIWAVYVNG------VTWKRSFYRSRLQSVKHFVDIHFRICVGDGS-SNFWTANWLG 962
L I+ + NG V W + V R VGDG FW W G
Sbjct: 1281 VILSIYGSHSNGWDVNNTVRWSHRCPWKAIALVFQEFSKFTRFVVGDGDIIRFWEDLWWG 1340
Query: 963 TSPL------LTDGVTPSNPDLTLKEACSQEVWQEDLFAMDLSNTALQKI*EM-----HC 1109
PL L VT N ++ + F +LS++ ++ + +
Sbjct: 1341 DQPLGVQYPRLLSIVTDKNAPISSILGYTHPFSWNFNFRRNLSDSEIEDLEGLMRSLDRL 1400
Query: 1110 HFSDD-QD*FIWDLTPXXXXXXXXXXXXXXXXKEINPFM--KWVWRSSVPLKMSILLWRV 1280
H S D W L+P E P K+VW S VP K+ +W V
Sbjct: 1401 HISPSVPDKRSWSLSPSGLFVVKSFFLALSQYSESPPVFPTKFVWNSQVPFKVKSFVWLV 1460
Query: 1281 LHGLLSTDDILQ 1316
H ++T+D+LQ
Sbjct: 1461 AHKKVNTNDLLQ 1472
>dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like protein [Arabidopsis
thaliana]
Length = 1223
Score = 84.3 bits (207), Expect(2) = 2e-29
Identities = 80/335 (23%), Positives = 126/335 (37%), Gaps = 22/335 (6%)
Frame = +3
Query: 417 LPMPYLGCSLYQGRTRRLYFQPLLDKISHKLDAWKGQXXXXXXXXXXXXHVLQSLPVHTL 596
LP+ YLG L R PLL+++ ++ +W + VL S+ L
Sbjct: 767 LPVRYLGLPLITKRLSTTDCLPLLEQVRKRIGSWTSRFLSYAGRLNLISSVLWSICNFWL 826
Query: 597 AAMNPPRSILRQLEGFFVRFFWGSQPEHTRQIWRSWDNLAYPVQEGGLGLRKLDTVLEAF 776
AA PR +R+LE F W ++ + SW + P EGGLGLR L +
Sbjct: 827 AAFRLPRKCIRELEKMCSAFLWSGTEMNSNKAKISWHMVCKPKDEGGLGLRSLKEANDVC 886
Query: 777 FAKLWWKI-HHSLGIWAVYV------NGVTW-------KRSFYRSRLQSVKHFVDIHFRI 914
KL WKI HS +W +V N W + S+ +L + ++
Sbjct: 887 CLKLVWKIVSHSNSLWVKWVDQHLLRNASFWEVKQTVSQGSWIWKKLLKYREVAKTLSKV 946
Query: 915 CVGDG-SSNFWTANWLGTSPLLTDGVTPSNPDLTLKEACS-QEVW---QEDLFAMDLSNT 1079
VG+G ++FW NW LL DL + + +E W ++ D+ N
Sbjct: 947 EVGNGKQTSFWYDNWSDLGQLLERTGDRGLIDLGISRRMTVEEAWTNRRQRRHRNDVYNV 1006
Query: 1080 ALQKI*EMHCHFSDDQD*FIWDLTPXXXXXXXXXXXXXXXXKEIN---PFMKWVWRSSVP 1250
+ + ++ +D +W + + P+ K +W S
Sbjct: 1007 IEDALKKSWDTRTETEDKVLWRGKSDVFRTTFSTRDTWHHTRSTSARVPWHKVIWFSHAT 1066
Query: 1251 LKMSILLWRVLHGLLSTDDILQRMGFFLASKCPLC 1355
K S W HG L T D + +A+ C C
Sbjct: 1067 PKYSFCSWLAAHGRLPTGDRMINWANGIATDCIFC 1101
Score = 72.8 bits (177), Expect(2) = 2e-29
Identities = 43/127 (33%), Positives = 67/127 (52%), Gaps = 2/127 (1%)
Frame = +2
Query: 8 LRSSHFSILVNGVSAGFF*ASRGLKQGDPLSPLLFILLTEAMSRGLKHLVSTNRVQHYAL 187
+ ++ FS+ VNG AG+F +SRGL+QG LSP LF++ + +S K L +H+
Sbjct: 633 ITTASFSVQVNGELAGYFQSSRGLRQGCALSPYLFVICMDVLS---KMLDKAAAARHFGY 689
Query: 188 YPGAPV--ITHLCFTDDLVIFTRANRRSVRELAAFLQIFEVASGQRINREKSDFILSRRC 361
+P +THL F DDL++ + RS+ + F SG RI+ EKS L+
Sbjct: 690 HPKCKTMGLTHLSFADDLMVLSDGKIRSIERIIKVFDEFAKWSGLRISLEKSTVYLAGLS 749
Query: 362 TTHHSHI 382
T + +
Sbjct: 750 ATARNEV 756
>gb|AAN04214.1| Putative retroelement [Oryza sativa Japonica Group]
gi|31430304|gb|AAP52238.1| retrotransposon protein,
putative, unclassified [Oryza sativa Japonica Group]
Length = 764
Score = 89.4 bits (220), Expect(2) = 2e-29
Identities = 74/339 (21%), Positives = 132/339 (38%), Gaps = 23/339 (6%)
Frame = +3
Query: 408 AQPLPMPYLGCSLYQGRTRRLYFQPLLDKISHKLDAWKGQXXXXXXXXXXXXHVLQSLPV 587
A +P YLG + + +KI +L WK L S+P+
Sbjct: 280 AGKMPFTYLGIPISMNKLTNADLDIPPNKIEKRLATWKCGYLSYGGKAILINSCLSSIPL 339
Query: 588 HTLAAMNPPRSILRQLEGFFVRFFWGSQPEHTRQIWRSWDNLAYPVQEGGLGLRKLDTVL 767
+ + P + +++ RFFW + + W+ L P + GGLG +
Sbjct: 340 YMMGVYLLPEGVHNKMDSIRARFFWEGLEKKRKYHMIKWEALCRPKEFGGLGFIDTRKMN 399
Query: 768 EAFFAKLWWKIHHS-------------LGIWAVYVNGVTWKRSFYRSRLQSVKHFVDIHF 908
A K +++ + + + S + L VK ++D+
Sbjct: 400 IALLCKWIYRLESGKEDPCCVLLRNKYMKDGGGFFQSKAEESSQFWKGLHEVKKWMDLGS 459
Query: 909 RICVGDG-SSNFWTANWLGTSPLLTDGVT----PSNPDLTLKEACSQEVWQEDLFAMDLS 1073
VG+G ++NFW+ W+G +PL T ++ + T+ + C + W +L L
Sbjct: 460 SYKVGNGKATNFWSDVWIGETPLKTQYPNIYRMCADKEKTVSQMCLEGDWYIEL-RRSLG 518
Query: 1074 NTALQKI*EMH-----CHFSDDQD*FIWDLTPXXXXXXXXXXXXXXXXKEINPFMKWVWR 1238
L + ++H H +++D IW LT + M+ +WR
Sbjct: 519 ERDLNEWNDLHNTPREIHLKEERDCIIWKLTKNGFYKAKTLYQALSFGGVKDKVMQDLWR 578
Query: 1239 SSVPLKMSILLWRVLHGLLSTDDILQRMGFFLASKCPLC 1355
SS+PLK+ IL W +L G + L++M + + C LC
Sbjct: 579 SSIPLKVKILFWLMLKGRIQAAGQLKKMKWSGSPNCKLC 617
Score = 67.4 bits (163), Expect(2) = 2e-29
Identities = 39/108 (36%), Positives = 62/108 (57%)
Frame = +2
Query: 26 SILVNGVSAGFF*ASRGLKQGDPLSPLLFILLTEAMSRGLKHLVSTNRVQHYALYPGAPV 205
++ +NG FF RG++QGDPLSPLLF L+ +A+S L + + V H L PG
Sbjct: 160 AVNINGEVKDFFKTYRGVRQGDPLSPLLFNLVADALSEMLNN--AKQAVPH--LVPGG-- 213
Query: 206 ITHLCFTDDLVIFTRANRRSVRELAAFLQIFEVASGQRINREKSDFIL 349
+THL + DD ++F ++ + L +E SG +IN +KS+ ++
Sbjct: 214 LTHLQYADDTILFMTNTEENIVTVKFLLYCYEAMSGLKINYQKSEIMV 261