BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cephaelis21_contig00003193
         (1263 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002284088.1| PREDICTED: exosome complex component RRP43-l...   452   e-125
ref|XP_004149399.1| PREDICTED: exosome complex component RRP43-l...   450   e-124
ref|XP_002532079.1| exosome complex exonuclease rrp43, putative ...   444   e-122
emb|CBI29839.3| unnamed protein product [Vitis vinifera]              443   e-122
gb|ABC01886.1| 3'-5'-exoribonuclease/RNA binding protein-like pr...   441   e-121

>ref|XP_002284088.1| PREDICTED: exosome complex component RRP43-like [Vitis vinifera]
          Length = 303

 Score =  452 bits (1163), Expect = e-125
 Identities = 229/302 (75%), Positives = 261/302 (86%)
 Frame = -1

Query: 1200 MAAAEGSDLSSEMEVDAFRRLFPLRFHERHLVESIRPDGRRLGKARDTTIALGAVTSANG 1021
            ++A    DLSSEMEVDAFRRLFPLR+HER L++SIRPD R LG+ARDT++ALGAV SA+G
Sbjct: 2    VSANVSGDLSSEMEVDAFRRLFPLRYHERFLLDSIRPDARPLGRARDTSLALGAVASADG 61

Query: 1020 SALTKIGCTTMLAAIKLEVMTPKLESPDEGCIAVDFHMPPICSPTVRPGRPAEAAPVVAK 841
            SAL KIGCTTMLAA+K+EVMTP  ESPDEG IA++F+MPPICSP VRPGRPAE APVV+K
Sbjct: 62   SALAKIGCTTMLAAVKMEVMTPPKESPDEGSIAIEFYMPPICSPLVRPGRPAEEAPVVSK 121

Query: 840  QLSDAIASSGMIDLKDLSLVSGKAAWMAYLDIYCLDADGSLFDVALLSAVAAFSHLQIPV 661
            QLSD I SSGMI+LK+LSLVSGKAAWMAYLDIYCLDADGSLFD ALL+AVAAFSHL+IPV
Sbjct: 122  QLSDTILSSGMINLKELSLVSGKAAWMAYLDIYCLDADGSLFDAALLAAVAAFSHLRIPV 181

Query: 660  VSLSDEGRIVLVPEDNGEGKVDKEPVNKEKRKLKLCTIPFSLTCILHKNYILADPTAEEE 481
            VSL++EGR+V+V E+N EGK +KEPVNK KRKL L ++PFSLTCILHKNYILADPTAEEE
Sbjct: 182  VSLNEEGRVVVVSEENEEGKSEKEPVNKGKRKLTLSSLPFSLTCILHKNYILADPTAEEE 241

Query: 480  SIMETQXXXXXXXXXXXXXLYKPGGAVLARTSAIQDCVALARQRMKEVKTILNEAISDME 301
            SIMET              LYKPGG VLA  SA+QDC+AL RQR+KE+K+ILNEAISDME
Sbjct: 242  SIMETLVTVVLDSSGQLVSLYKPGGPVLAYASAVQDCIALTRQRVKELKSILNEAISDME 301

Query: 300  VD 295
            VD
Sbjct: 302  VD 303


>ref|XP_004149399.1| PREDICTED: exosome complex component RRP43-like [Cucumis sativus]
            gi|449503802|ref|XP_004162184.1| PREDICTED: exosome
            complex component RRP43-like [Cucumis sativus]
          Length = 304

 Score =  450 bits (1158), Expect = e-124
 Identities = 224/299 (74%), Positives = 255/299 (85%)
 Frame = -1

Query: 1191 AEGSDLSSEMEVDAFRRLFPLRFHERHLVESIRPDGRRLGKARDTTIALGAVTSANGSAL 1012
            A   DLSS+MEVDAFRRLFP++F+ERHL ESIRPDGR LGKARDTTIALG V+SANGSAL
Sbjct: 6    AASGDLSSQMEVDAFRRLFPIQFYERHLTESIRPDGRSLGKARDTTIALGPVSSANGSAL 65

Query: 1011 TKIGCTTMLAAIKLEVMTPKLESPDEGCIAVDFHMPPICSPTVRPGRPAEAAPVVAKQLS 832
             KIG TTMLAAIK+EVMTP +ESPDEGCIA+DFHMPP+CSP VRPGRPAEAAPV++KQLS
Sbjct: 66   AKIGSTTMLAAIKMEVMTPSVESPDEGCIALDFHMPPVCSPIVRPGRPAEAAPVISKQLS 125

Query: 831  DAIASSGMIDLKDLSLVSGKAAWMAYLDIYCLDADGSLFDVALLSAVAAFSHLQIPVVSL 652
            D I+SSGMIDL++LSLV GKAAWMAYLDIYCLDADGSLFD ALLSA AAFSHLQIPVV+L
Sbjct: 126  DTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQIPVVAL 185

Query: 651  SDEGRIVLVPEDNGEGKVDKEPVNKEKRKLKLCTIPFSLTCILHKNYILADPTAEEESIM 472
            +D+G++V V E+ G    +KEPVNKE RKLKL +IPFSLTC+LHK YILADPTAEEES+M
Sbjct: 186  NDDGKVVFVCEEEGGENFEKEPVNKENRKLKLNSIPFSLTCLLHKKYILADPTAEEESVM 245

Query: 471  ETQXXXXXXXXXXXXXLYKPGGAVLARTSAIQDCVALARQRMKEVKTILNEAISDMEVD 295
            ET               YKPGG+VLA TSA+QDC+AL RQR KE++ IL+EAIS ME+D
Sbjct: 246  ETIVTVVLDSSGQLVSFYKPGGSVLAYTSAVQDCIALTRQRSKELQIILDEAISGMEID 304


>ref|XP_002532079.1| exosome complex exonuclease rrp43, putative [Ricinus communis]
            gi|223528261|gb|EEF30313.1| exosome complex exonuclease
            rrp43, putative [Ricinus communis]
          Length = 303

 Score =  444 bits (1142), Expect = e-122
 Identities = 221/295 (74%), Positives = 253/295 (85%)
 Frame = -1

Query: 1179 DLSSEMEVDAFRRLFPLRFHERHLVESIRPDGRRLGKARDTTIALGAVTSANGSALTKIG 1000
            DLS+EME DAFRRLFPL FHERHL ESIRPDGR LG+ARDTT+ALGAV SA+GSA+ KIG
Sbjct: 9    DLSTEMEADAFRRLFPLLFHERHLAESIRPDGRSLGRARDTTLALGAVVSADGSAIAKIG 68

Query: 999  CTTMLAAIKLEVMTPKLESPDEGCIAVDFHMPPICSPTVRPGRPAEAAPVVAKQLSDAIA 820
             TTM+AAIK+EVMTP  ESPDEGCIA+DFHMPPICSP VRPGRPAEAAPVV+KQLSD I 
Sbjct: 69   STTMMAAIKMEVMTPSSESPDEGCIAIDFHMPPICSPLVRPGRPAEAAPVVSKQLSDTIM 128

Query: 819  SSGMIDLKDLSLVSGKAAWMAYLDIYCLDADGSLFDVALLSAVAAFSHLQIPVVSLSDEG 640
            SS MIDLK+LSLVSGKAAWMAYLDIYCLDADGSLFD AL SAVAAF++LQIP+VSL+D+G
Sbjct: 129  SSAMIDLKELSLVSGKAAWMAYLDIYCLDADGSLFDAALFSAVAAFTNLQIPIVSLNDDG 188

Query: 639  RIVLVPEDNGEGKVDKEPVNKEKRKLKLCTIPFSLTCILHKNYILADPTAEEESIMETQX 460
            ++V+V ++N  GK +KE VNKEKRKL L ++PFSLTC+LHKNYILADPTAEEESIMET  
Sbjct: 189  KVVVVSDENEGGKREKEAVNKEKRKLTLRSLPFSLTCVLHKNYILADPTAEEESIMETLV 248

Query: 459  XXXXXXXXXXXXLYKPGGAVLARTSAIQDCVALARQRMKEVKTILNEAISDMEVD 295
                         YKPGG VLA TSA+QDCVAL RQR+KE++ IL+EA+S M++D
Sbjct: 249  TVVLDSSARLVSFYKPGGPVLAYTSAVQDCVALTRQRVKELQNILDEALSGMQID 303


>emb|CBI29839.3| unnamed protein product [Vitis vinifera]
          Length = 311

 Score =  443 bits (1140), Expect = e-122
 Identities = 228/310 (73%), Positives = 261/310 (84%), Gaps = 8/310 (2%)
 Frame = -1

Query: 1200 MAAAEGSDLSSEMEVDAFRRLFPLRFHERHLVESIRPDGRRLGKARDTTIALGAVTSANG 1021
            ++A    DLSSEMEVDAFRRLFPLR+HER L++SIRPD R LG+ARDT++ALGAV SA+G
Sbjct: 2    VSANVSGDLSSEMEVDAFRRLFPLRYHERFLLDSIRPDARPLGRARDTSLALGAVASADG 61

Query: 1020 SALTKIGCTTMLAAIKLEVMTPKLESPDEGCIAVDFHMPPICSPTVRPGRPAEAAPVVAK 841
            SAL KIGCTTMLAA+K+EVMTP  ESPDEG IA++F+MPPICSP VRPGRPAE APVV+K
Sbjct: 62   SALAKIGCTTMLAAVKMEVMTPPKESPDEGSIAIEFYMPPICSPLVRPGRPAEEAPVVSK 121

Query: 840  QLSDAI--------ASSGMIDLKDLSLVSGKAAWMAYLDIYCLDADGSLFDVALLSAVAA 685
            QLSD I        + SGMI+LK+LSLVSGKAAWMAYLDIYCLDADGSLFD ALL+AVAA
Sbjct: 122  QLSDTILRHVNVVTSFSGMINLKELSLVSGKAAWMAYLDIYCLDADGSLFDAALLAAVAA 181

Query: 684  FSHLQIPVVSLSDEGRIVLVPEDNGEGKVDKEPVNKEKRKLKLCTIPFSLTCILHKNYIL 505
            FSHL+IPVVSL++EGR+V+V E+N EGK +KEPVNK KRKL L ++PFSLTCILHKNYIL
Sbjct: 182  FSHLRIPVVSLNEEGRVVVVSEENEEGKSEKEPVNKGKRKLTLSSLPFSLTCILHKNYIL 241

Query: 504  ADPTAEEESIMETQXXXXXXXXXXXXXLYKPGGAVLARTSAIQDCVALARQRMKEVKTIL 325
            ADPTAEEESIMET              LYKPGG VLA  SA+QDC+AL RQR+KE+K+IL
Sbjct: 242  ADPTAEEESIMETLVTVVLDSSGQLVSLYKPGGPVLAYASAVQDCIALTRQRVKELKSIL 301

Query: 324  NEAISDMEVD 295
            NEAISDMEVD
Sbjct: 302  NEAISDMEVD 311


>gb|ABC01886.1| 3'-5'-exoribonuclease/RNA binding protein-like protein [Solanum
            tuberosum]
          Length = 314

 Score =  441 bits (1134), Expect = e-121
 Identities = 227/302 (75%), Positives = 255/302 (84%), Gaps = 1/302 (0%)
 Frame = -1

Query: 1200 MAAAEGS-DLSSEMEVDAFRRLFPLRFHERHLVESIRPDGRRLGKARDTTIALGAVTSAN 1024
            MAAA GS DLSSEMEVDAFRRLFPLR+HE HL++S+RPD R+LG ARDTT+ALGAV SA+
Sbjct: 1    MAAANGSSDLSSEMEVDAFRRLFPLRYHEHHLLKSVRPDARKLGSARDTTLALGAVASAD 60

Query: 1023 GSALTKIGCTTMLAAIKLEVMTPKLESPDEGCIAVDFHMPPICSPTVRPGRPAEAAPVVA 844
            GSAL KIG TTMLAAIK+EVMTP +E PDEG IA++FHMPPICSP VRPGRPAEAA V++
Sbjct: 61   GSALAKIGSTTMLAAIKMEVMTPTVECPDEGSIAIEFHMPPICSPLVRPGRPAEAASVIS 120

Query: 843  KQLSDAIASSGMIDLKDLSLVSGKAAWMAYLDIYCLDADGSLFDVALLSAVAAFSHLQIP 664
            KQLSD I SSGMIDLK+L LV GKAAWMAYLDIYCLDADG+LFD ALLSAVAAFSHL IP
Sbjct: 121  KQLSDTILSSGMIDLKELCLVGGKAAWMAYLDIYCLDADGALFDTALLSAVAAFSHLNIP 180

Query: 663  VVSLSDEGRIVLVPEDNGEGKVDKEPVNKEKRKLKLCTIPFSLTCILHKNYILADPTAEE 484
            VVSL+D+GRIVLV ED    K++KEPVN EKRKLKL ++PFSLTCILHKNYILADPTAEE
Sbjct: 181  VVSLNDDGRIVLVSEDTVRLKLEKEPVNTEKRKLKLNSLPFSLTCILHKNYILADPTAEE 240

Query: 483  ESIMETQXXXXXXXXXXXXXLYKPGGAVLARTSAIQDCVALARQRMKEVKTILNEAISDM 304
            E IMET              L KPGG VL+ TS IQDC+ LAR+R KE++++LNEAISDM
Sbjct: 241  EPIMETIVTVVLDSSHQLVSLNKPGGPVLSHTSVIQDCIGLARRRAKELQSVLNEAISDM 300

Query: 303  EV 298
            EV
Sbjct: 301  EV 302