BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cephaelis21_contig00001881
         (586 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AFP55574.1| non-ltr retroelement reverse transcriptase [Rosa ...    77   2e-19
gb|AFP55557.1| non-ltr retroelement reverse transcriptase [Rosa ...    89   7e-16
gb|ABO80459.1| RNA-directed DNA polymerase (Reverse transcriptas...    86   5e-15
emb|CCA66054.1| hypothetical protein [Beta vulgaris subsp. vulga...    84   2e-14
emb|CCA66036.1| hypothetical protein [Beta vulgaris subsp. vulga...    84   2e-14

>gb|AFP55574.1| non-ltr retroelement reverse transcriptase [Rosa rugosa]
          Length = 1656

 Score = 77.4 bits (189), Expect(2) = 2e-19
 Identities = 44/111 (39%), Positives = 63/111 (56%), Gaps = 2/111 (1%)
 Frame = -2

Query: 585  KPLLS*LISKEQSTFLSDRDIMDNVLLA*EIIQYID--H*VRRGNIAFKLDMMKAFDRVS 412
            +P +S LIS  QS F+S+R I DNV++A EI  ++        G    KLDM KA+DRV 
Sbjct: 1135 QPFMSELISDNQSAFVSNRQIQDNVIIAHEIYHHLKLTRSCNNGAFGLKLDMNKAYDRVE 1194

Query: 411  WSFLQRLLLRFGIPTQFVTPVMNNLKGSWFSMLLNGSPTGFLKAFHGLNQG 259
            W+FL+ +L + G    ++  VM+ +  S  S+L+NG P        GL QG
Sbjct: 1195 WNFLEAVLRKMGFVDSWIGLVMSCVTTSSLSVLINGKPGPSFLPSRGLRQG 1245



 Score = 43.5 bits (101), Expect(2) = 2e-19
 Identities = 21/49 (42%), Positives = 30/49 (61%)
 Frame = -1

Query: 271  VKPGDPLSPYLFILLVEVLSRGLISITQVGQLASYACPQGSTPVSHLFF 125
            ++ GDPLSP+LF+ + +VLSR +  + Q   L        + PVSHLFF
Sbjct: 1242 LRQGDPLSPFLFLFVNDVLSRMINKMCQDSLLTPVTIGPNNLPVSHLFF 1290


>gb|AFP55557.1| non-ltr retroelement reverse transcriptase [Rosa rugosa]
          Length = 1747

 Score = 88.6 bits (218), Expect = 7e-16
 Identities = 66/197 (33%), Positives = 95/197 (48%), Gaps = 5/197 (2%)
 Frame = -2

Query: 585  KPLLS*LISKEQSTFLSDRDIMDNVLLA*EIIQYIDH*VRRGN-----IAFKLDMMKAFD 421
            K +L  +I++ QS F+S R I DN++ A EII  +    RRG      IA KLDM KA+D
Sbjct: 814  KSVLPEVIAENQSAFMSQRIIHDNIIAAFEIIHCLK---RRGKDSRQKIALKLDMTKAYD 870

Query: 420  RVSWSFLQRLLLRFGIPTQFVTPVMNNLKGSWFSMLLNGSPTGFLKAFHGLNQGILCRRI 241
            RV W FLQR++   G P +FV  +M+ +K   +S+LL G+P G +K   GL QG      
Sbjct: 871  RVEWGFLQRMMEVMGFPDRFVFLIMDCVKSVTYSVLLQGAPFGKIKPSRGLRQGDPISPY 930

Query: 240  YSFYWWRFLVGA*FL*HRWVNWRXXXXXXXXXXLVICFFADDLIIFTRSLQG*HRHLFQF 61
                    L        R               +   F+ADD ++F  +       L   
Sbjct: 931  LFLIVAEGLSALIRKAEREQQIHGVAIARGAPSVSHLFYADDSLLFCDATVTDCMALKNI 990

Query: 60   IDAYEFSTGQRVSKPKS 10
               YE ++GQ+++K KS
Sbjct: 991  FSTYEAASGQKINKDKS 1007


>gb|ABO80459.1| RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H
           [Medicago truncatula]
          Length = 869

 Score = 85.9 bits (211), Expect = 5e-15
 Identities = 60/201 (29%), Positives = 96/201 (47%), Gaps = 9/201 (4%)
 Frame = -2

Query: 585 KPLLS*LISKEQSTFLSDRDIMDNVLLA*EIIQYIDH*VRR-GNIAFKLDMMKAFDRVSW 409
           +P+L+ +I   QS+FL  R   DN ++  EI+ ++    R+ G +AFKLD+ KAFD V+W
Sbjct: 89  RPILNDIIGPYQSSFLQGRGTSDNSIVLQEIVHFMRRSKRKKGYVAFKLDLEKAFDNVNW 148

Query: 408 SFLQRLLLRFGIPTQFVTPVMNNLKGSWFSMLLNGSPTGFLKAFHGLNQG--------IL 253
            FL+  L  FG P   +  +M+ +  S FS+L NG+    +K  HGL QG        I+
Sbjct: 149 EFLRSCLQDFGFPDDTIKLIMHCVTSSTFSVLWNGNKWPPIKPTHGLRQGDPLSPYLFII 208

Query: 252 CRRIYSFYWWRFLVGA*FL*HRWVNWRXXXXXXXXXXLVICFFADDLIIFTRSLQG*HRH 73
           C    S    + +            W           L    FADD+++FT++     R 
Sbjct: 209 CMEKLSLAINKAVHEG--------EWEPIRMSASSPPLSHLLFADDVLLFTKAKNSQLRF 260

Query: 72  LFQFIDAYEFSTGQRVSKPKS 10
           +    D +  + G +++  KS
Sbjct: 261 IKDLFDRFSKALGLKINLSKS 281


>emb|CCA66054.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1355

 Score = 84.0 bits (206), Expect = 2e-14
 Identities = 62/202 (30%), Positives = 97/202 (48%), Gaps = 10/202 (4%)
 Frame = -2

Query: 585  KPLLS*LISKEQSTFLSDRDIMDNVLLA*EIIQYIDH*--VRRGNIAFKLDMMKAFDRVS 412
            K  L  +IS+ QS F+  R I DN L+A E+   + +    R+G IA KLDM KA+DRV 
Sbjct: 530  KSFLPEIISENQSAFVPGRLITDNALIAMEVFHSMKNRNRSRKGTIAMKLDMSKAYDRVE 589

Query: 411  WSFLQRLLLRFGIPTQFVTPVMNNLKGSWFSMLLNGSPTGFLKAFHGLNQG--------I 256
            W FL++LLL  G   ++V  +M  +    +S ++NGS  G +    GL QG        I
Sbjct: 590  WGFLRKLLLTMGFDGRWVNLIMEFVSSVTYSFIINGSVCGSVVPARGLRQGDPLSPYLFI 649

Query: 255  LCRRIYSFYWWRFLVGA*FL*HRWVNWRXXXXXXXXXXLVICFFADDLIIFTRSLQG*HR 76
            +    +S    R +                        +   FFADD ++FTR+ +    
Sbjct: 650  MVADAFSKMIQRKVQDK--------QLHGAKASRSGPEISHLFFADDSLLFTRANRQECT 701

Query: 75   HLFQFIDAYEFSTGQRVSKPKS 10
             +   ++ YE ++GQ+++  KS
Sbjct: 702  IIVDILNQYELASGQKINYEKS 723


>emb|CCA66036.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1369

 Score = 84.0 bits (206), Expect = 2e-14
 Identities = 61/206 (29%), Positives = 102/206 (49%), Gaps = 14/206 (6%)
 Frame = -2

Query: 585  KPLLS*LISKEQSTFLSDRDIMDNVLLA*EIIQYIDH*V--RRGNIAFKLDMMKAFDRVS 412
            K +L  +I + QS F+  R I DNVL+A E   ++      ++G +  KLDM KA+DRV 
Sbjct: 535  KMVLPMVIHESQSGFVPGRLITDNVLVAYECFHFLRKKKTGKKGYLGLKLDMSKAYDRVE 594

Query: 411  WSFLQRLLLRFGIPTQFVTPVMNNLKGSWFSMLLNGSPTGFLKAFHGLNQG--------I 256
            W FL+ ++L+ G PT++   VMN +  + FS+L+NG P+       GL QG        +
Sbjct: 595  WCFLENMMLKLGFPTRYTKLVMNCVTSARFSVLVNGQPSRNFFPSRGLRQGDPLSPFLFV 654

Query: 255  LCRRIYSFYW----WRFLVGA*FL*HRWVNWRXXXXXXXXXXLVICFFADDLIIFTRSLQ 88
            +C    S        + ++    + HR               +   FFADD ++F R+ +
Sbjct: 655  VCAEGLSTLLRDAEEKKVIHGVKIGHR------------VSPISHLFFADDSLLFIRATE 702

Query: 87   G*HRHLFQFIDAYEFSTGQRVSKPKS 10
                ++   +  YE ++GQ+++  KS
Sbjct: 703  EEVENVMDILSTYEAASGQKLNMEKS 728