BLASTX nr result
ID: Cephaelis21_contig00000790
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cephaelis21_contig00000790
(1338 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_001234441.1| peptide deformylase 1B, chloroplastic [Solan... 152 2e-34
gb|AAG33980.1|AF269165_1 peptide deformylase [Arabidopsis thaliana] 143 9e-32
gb|AAM62644.1| Formylmethionine deformylase [Arabidopsis thaliana] 142 1e-31
ref|NP_196970.1| peptide deformylase 1B [Arabidopsis thaliana] g... 142 1e-31
pdb|3M6R|A Chain A, Crystal Structure Of Arabidopsis Thaliana Pe... 142 1e-31
>ref|NP_001234441.1| peptide deformylase 1B, chloroplastic [Solanum lycopersicum]
gi|17433052|sp|Q9FV54.1|DEF1B_SOLLC RecName:
Full=Peptide deformylase 1B, chloroplastic; Short=PDF
1B; AltName: Full=Polypeptide deformylase; Flags:
Precursor gi|11320950|gb|AAG33972.1| peptide
deformylase-like protein [Solanum lycopersicum]
Length = 279
Score = 152 bits (384), Expect = 2e-34
Identities = 88/145 (60%), Positives = 100/145 (68%)
Frame = +2
Query: 356 ASWLCSAPLSHTLLPCLHRCLPIRHFSTFGHFHSFIASHHWLMSASRSLKPPGPTVFAQA 535
ASW S+ + L P L R S H + S + L ++ S KPP V+AQA
Sbjct: 6 ASWASSSSFTRFLRPLLSRNSSPSPISYSLHRYK---SANCLFFSASSNKPPKLAVYAQA 62
Query: 536 RRSSSSKFKEDEIASVADLQFVAPLKIVEYPDPPLRAKNKRINIFDDNLKKLVDEMFNVM 715
RR SSK K DEIA+ ADL FV PLKIVEYPDP LRAKNKRI+ FD NLKKLVDEMF++M
Sbjct: 63 RRVLSSKTKGDEIATPADLSFVVPLKIVEYPDPILRAKNKRIDNFDANLKKLVDEMFDIM 122
Query: 716 YRTDGIGLSAPQVGKNVHLMVFNAA 790
Y+TDGIGLSAPQVG NV LMVFNAA
Sbjct: 123 YKTDGIGLSAPQVGMNVQLMVFNAA 147
Score = 137 bits (344), Expect = 8e-30
Identities = 66/91 (72%), Positives = 78/91 (85%), Gaps = 1/91 (1%)
Frame = +3
Query: 882 RPDSVRIDAQDITGERFSLQLIGLPARVFQHEYDHLQGILFFDRMTDEVLDSIRADLQAL 1061
RP+SV++DAQDI G RF + L LPARVFQHE+DHLQG+LFFD+MTDEVLD+IR L AL
Sbjct: 189 RPESVKVDAQDINGTRFEISLSALPARVFQHEFDHLQGVLFFDKMTDEVLDTIREKLVAL 248
Query: 1062 EKKYEDRTGLPSPEKIDALR-RKAAVGFGKS 1151
EKKYEDRTGLP+PE I+ + +KAAVGFGKS
Sbjct: 249 EKKYEDRTGLPTPESINTRKIKKAAVGFGKS 279
>gb|AAG33980.1|AF269165_1 peptide deformylase [Arabidopsis thaliana]
Length = 273
Score = 143 bits (361), Expect = 9e-32
Identities = 67/90 (74%), Positives = 82/90 (91%), Gaps = 1/90 (1%)
Frame = +3
Query: 882 RPDSVRIDAQDITGERFSLQLIGLPARVFQHEYDHLQGILFFDRMTDEVLDSIRADLQAL 1061
RP SV+IDA+DITGERFS+ L LPAR+FQHEYDHL+G+LFFDRMTD+VLDSIR +L+AL
Sbjct: 183 RPQSVKIDARDITGERFSISLSSLPARIFQHEYDHLEGVLFFDRMTDQVLDSIREELEAL 242
Query: 1062 EKKYEDRTGLPSPEKIDA-LRRKAAVGFGK 1148
EKKYE++TGLPSPE+++A +RKA VGFGK
Sbjct: 243 EKKYEEKTGLPSPERVEARQKRKAGVGFGK 272
Score = 130 bits (326), Expect = 1e-27
Identities = 76/143 (53%), Positives = 92/143 (64%)
Frame = +2
Query: 362 WLCSAPLSHTLLPCLHRCLPIRHFSTFGHFHSFIASHHWLMSASRSLKPPGPTVFAQARR 541
+L + PLS LLP L R +T + + S S P +V A+ +R
Sbjct: 7 FLQAPPLSRILLPVLSR-----RATTLSAGYGRLKSTVTFCSTVNRTSPLTSSVRAEVKR 61
Query: 542 SSSSKFKEDEIASVADLQFVAPLKIVEYPDPPLRAKNKRINIFDDNLKKLVDEMFNVMYR 721
S K+D++AS D+QF PLKIVEYPDP LRAKNKRI+IFD+NLK LVD MF+VMY+
Sbjct: 62 VSR---KDDKVASATDVQFETPLKIVEYPDPILRAKNKRIDIFDENLKNLVDAMFDVMYK 118
Query: 722 TDGIGLSAPQVGKNVHLMVFNAA 790
TDGIGLSAPQVG NV LMVFN A
Sbjct: 119 TDGIGLSAPQVGLNVQLMVFNPA 141
>gb|AAM62644.1| Formylmethionine deformylase [Arabidopsis thaliana]
Length = 273
Score = 142 bits (359), Expect = 1e-31
Identities = 67/90 (74%), Positives = 82/90 (91%), Gaps = 1/90 (1%)
Frame = +3
Query: 882 RPDSVRIDAQDITGERFSLQLIGLPARVFQHEYDHLQGILFFDRMTDEVLDSIRADLQAL 1061
RP SV+IDA+DITGERFS+ L LPAR+FQHEYDHL+G+LFFDRMTD+VLDSIR +L+AL
Sbjct: 183 RPQSVKIDARDITGERFSISLSRLPARIFQHEYDHLEGVLFFDRMTDQVLDSIREELEAL 242
Query: 1062 EKKYEDRTGLPSPEKIDA-LRRKAAVGFGK 1148
EKKYE++TGLPSPE+++A +RKA VGFGK
Sbjct: 243 EKKYEEKTGLPSPERVEARQKRKAGVGFGK 272
Score = 129 bits (324), Expect = 2e-27
Identities = 76/143 (53%), Positives = 92/143 (64%)
Frame = +2
Query: 362 WLCSAPLSHTLLPCLHRCLPIRHFSTFGHFHSFIASHHWLMSASRSLKPPGPTVFAQARR 541
+L + PLS LLP L R +T + + S S P +V A+ +R
Sbjct: 7 FLQAPPLSRILLPVLSR-----RATTLSAGYGRLKSTVTFCSTVNRNSPLTSSVRAEVKR 61
Query: 542 SSSSKFKEDEIASVADLQFVAPLKIVEYPDPPLRAKNKRINIFDDNLKKLVDEMFNVMYR 721
S K+D++AS D+QF PLKIVEYPDP LRAKNKRI+IFD+NLK LVD MF+VMY+
Sbjct: 62 VSR---KDDKVASATDVQFETPLKIVEYPDPILRAKNKRIDIFDENLKNLVDAMFDVMYK 118
Query: 722 TDGIGLSAPQVGKNVHLMVFNAA 790
TDGIGLSAPQVG NV LMVFN A
Sbjct: 119 TDGIGLSAPQVGLNVQLMVFNPA 141
>ref|NP_196970.1| peptide deformylase 1B [Arabidopsis thaliana]
gi|30684999|ref|NP_850821.1| peptide deformylase 1B
[Arabidopsis thaliana]
gi|39932734|sp|Q9FUZ2.2|DEF1B_ARATH RecName: Full=Peptide
deformylase 1B, chloroplastic; Short=AtDEF2;
Short=AtPDF1B; Short=PDF 1B; AltName: Full=Polypeptide
deformylase; Flags: Precursor gi|7573315|emb|CAB87633.1|
putative protein [Arabidopsis thaliana]
gi|15292891|gb|AAK92816.1| unknown protein [Arabidopsis
thaliana] gi|20465677|gb|AAM20307.1| unknown protein
[Arabidopsis thaliana] gi|332004676|gb|AED92059.1|
peptide deformylase 1B [Arabidopsis thaliana]
gi|332004677|gb|AED92060.1| peptide deformylase 1B
[Arabidopsis thaliana]
Length = 273
Score = 142 bits (359), Expect = 1e-31
Identities = 67/90 (74%), Positives = 82/90 (91%), Gaps = 1/90 (1%)
Frame = +3
Query: 882 RPDSVRIDAQDITGERFSLQLIGLPARVFQHEYDHLQGILFFDRMTDEVLDSIRADLQAL 1061
RP SV+IDA+DITGERFS+ L LPAR+FQHEYDHL+G+LFFDRMTD+VLDSIR +L+AL
Sbjct: 183 RPQSVKIDARDITGERFSISLSRLPARIFQHEYDHLEGVLFFDRMTDQVLDSIREELEAL 242
Query: 1062 EKKYEDRTGLPSPEKIDA-LRRKAAVGFGK 1148
EKKYE++TGLPSPE+++A +RKA VGFGK
Sbjct: 243 EKKYEEKTGLPSPERVEARQKRKAGVGFGK 272
Score = 130 bits (326), Expect = 1e-27
Identities = 76/143 (53%), Positives = 92/143 (64%)
Frame = +2
Query: 362 WLCSAPLSHTLLPCLHRCLPIRHFSTFGHFHSFIASHHWLMSASRSLKPPGPTVFAQARR 541
+L + PLS LLP L R +T + + S S P +V A+ +R
Sbjct: 7 FLQAPPLSRILLPVLSR-----RATTLSAGYGRLKSTVTFCSTVNRTSPLTSSVRAEVKR 61
Query: 542 SSSSKFKEDEIASVADLQFVAPLKIVEYPDPPLRAKNKRINIFDDNLKKLVDEMFNVMYR 721
S K+D++AS D+QF PLKIVEYPDP LRAKNKRI+IFD+NLK LVD MF+VMY+
Sbjct: 62 VSR---KDDKVASATDVQFETPLKIVEYPDPILRAKNKRIDIFDENLKNLVDAMFDVMYK 118
Query: 722 TDGIGLSAPQVGKNVHLMVFNAA 790
TDGIGLSAPQVG NV LMVFN A
Sbjct: 119 TDGIGLSAPQVGLNVQLMVFNPA 141
>pdb|3M6R|A Chain A, Crystal Structure Of Arabidopsis Thaliana Peptide
Deformylase 1b (Atpdf1b) G41m Mutant In Complex With
Actinonin gi|327200564|pdb|3M6R|B Chain B, Crystal
Structure Of Arabidopsis Thaliana Peptide Deformylase 1b
(Atpdf1b) G41m Mutant In Complex With Actinonin
gi|327200565|pdb|3M6R|C Chain C, Crystal Structure Of
Arabidopsis Thaliana Peptide Deformylase 1b (Atpdf1b)
G41m Mutant In Complex With Actinonin
gi|327200566|pdb|3M6R|D Chain D, Crystal Structure Of
Arabidopsis Thaliana Peptide Deformylase 1b (Atpdf1b)
G41m Mutant In Complex With Actinonin
gi|335892380|pdb|3PN6|A Chain A, Crystal Structure Of
Arabidopsis Thaliana Petide Deformylase 1b (Atpdf1b) G41m
Mutant gi|335892381|pdb|3PN6|B Chain B, Crystal Structure
Of Arabidopsis Thaliana Petide Deformylase 1b (Atpdf1b)
G41m Mutant
Length = 193
Score = 142 bits (359), Expect = 1e-31
Identities = 67/90 (74%), Positives = 82/90 (91%), Gaps = 1/90 (1%)
Frame = +3
Query: 882 RPDSVRIDAQDITGERFSLQLIGLPARVFQHEYDHLQGILFFDRMTDEVLDSIRADLQAL 1061
RP SV+IDA+DITGERFS+ L LPAR+FQHEYDHL+G+LFFDRMTD+VLDSIR +L+AL
Sbjct: 103 RPQSVKIDARDITGERFSISLSRLPARIFQHEYDHLEGVLFFDRMTDQVLDSIREELEAL 162
Query: 1062 EKKYEDRTGLPSPEKIDA-LRRKAAVGFGK 1148
EKKYE++TGLPSPE+++A +RKA VGFGK
Sbjct: 163 EKKYEEKTGLPSPERVEARQKRKAGVGFGK 192
Score = 98.2 bits (243), Expect = 4e-18
Identities = 48/61 (78%), Positives = 54/61 (88%)
Frame = +2
Query: 608 LKIVEYPDPPLRAKNKRINIFDDNLKKLVDEMFNVMYRTDGIGLSAPQVGKNVHLMVFNA 787
++IVEYPDP LRAKNKRI+IFD+NLK LVD MF+VMY+TD IGLSAPQVG NV LMVFN
Sbjct: 1 MEIVEYPDPILRAKNKRIDIFDENLKNLVDAMFDVMYKTDMIGLSAPQVGLNVQLMVFNP 60
Query: 788 A 790
A
Sbjct: 61 A 61