BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Catharanthus23_contig00040867
         (308 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_009002249.1| RNA polymerase beta' subunit (chloroplast) [...    58   1e-06
gb|AHH30432.1| RNA polymerase beta (chloroplast) [Bartsia inaequ...    55   7e-06
gb|AGL45327.1| RpoC1 (chloroplast) [Sesamum indicum]                   55   7e-06
ref|YP_004935657.1| rpoC1 gene product (chloroplast) [Sesamum in...    55   7e-06
ref|YP_008964025.1| RNA polymerase beta' subunit 1 [Ajuga reptan...    55   1e-05
gb|EPS73618.1| hypothetical protein M569_01139, partial [Genlise...    55   1e-05

>ref|YP_009002249.1| RNA polymerase beta' subunit (chloroplast) [Pinguicula ehlersiae]
           gi|575882131|emb|CDL78805.1| RNA polymerase beta'
           subunit (chloroplast) [Pinguicula ehlersiae]
          Length = 687

 Score = 57.8 bits (138), Expect = 1e-06
 Identities = 25/39 (64%), Positives = 30/39 (76%)
 Frame = -3

Query: 258 WRLDQQVIVSRETLIEIDYKSLAPCYEIYGHHLTITRIK 142
           W LDQ+VI SRET IE+ Y+SL  CYEIYGH+L +  IK
Sbjct: 613 WHLDQRVIASRETPIEVHYESLGTCYEIYGHYLIVRSIK 651


>gb|AHH30432.1| RNA polymerase beta (chloroplast) [Bartsia inaequalis]
          Length = 679

 Score = 55.5 bits (132), Expect = 7e-06
 Identities = 25/39 (64%), Positives = 30/39 (76%)
 Frame = -3

Query: 258 WRLDQQVIVSRETLIEIDYKSLAPCYEIYGHHLTITRIK 142
           WRLDQ+VI SRET IE+ Y+SL   YEIYGH+L +  IK
Sbjct: 605 WRLDQRVIASRETPIEVHYESLGTYYEIYGHYLIVRSIK 643


>gb|AGL45327.1| RpoC1 (chloroplast) [Sesamum indicum]
          Length = 687

 Score = 55.5 bits (132), Expect = 7e-06
 Identities = 25/39 (64%), Positives = 30/39 (76%)
 Frame = -3

Query: 258 WRLDQQVIVSRETLIEIDYKSLAPCYEIYGHHLTITRIK 142
           WRLDQ+VI SRET IE+ Y+SL   YEIYGH+L +  IK
Sbjct: 613 WRLDQRVIASRETPIEVHYESLGTYYEIYGHYLIVRSIK 651


>ref|YP_004935657.1| rpoC1 gene product (chloroplast) [Sesamum indicum]
           gi|347448286|gb|AEO92697.1| RNA polymerase beta' subunit
           (chloroplast) [Sesamum indicum]
          Length = 691

 Score = 55.5 bits (132), Expect = 7e-06
 Identities = 25/39 (64%), Positives = 30/39 (76%)
 Frame = -3

Query: 258 WRLDQQVIVSRETLIEIDYKSLAPCYEIYGHHLTITRIK 142
           WRLDQ+VI SRET IE+ Y+SL   YEIYGH+L +  IK
Sbjct: 617 WRLDQRVIASRETPIEVHYESLGTYYEIYGHYLIVRSIK 655


>ref|YP_008964025.1| RNA polymerase beta' subunit 1 [Ajuga reptans]
           gi|558697184|gb|AHA84939.1| RNA polymerase beta' subunit
           1 [Ajuga reptans]
          Length = 680

 Score = 55.1 bits (131), Expect = 1e-05
 Identities = 25/39 (64%), Positives = 30/39 (76%)
 Frame = -3

Query: 258 WRLDQQVIVSRETLIEIDYKSLAPCYEIYGHHLTITRIK 142
           WRLDQ+VI SRET IE+ Y+SL   YEIYGH+L +  IK
Sbjct: 606 WRLDQRVIASRETPIEVHYESLGNYYEIYGHYLIVRSIK 644


>gb|EPS73618.1| hypothetical protein M569_01139, partial [Genlisea aurea]
          Length = 422

 Score = 55.1 bits (131), Expect = 1e-05
 Identities = 22/39 (56%), Positives = 30/39 (76%)
 Frame = -3

Query: 258 WRLDQQVIVSRETLIEIDYKSLAPCYEIYGHHLTITRIK 142
           WRLDQ+VI  RET +E+ Y+S+  CYEIYGH+L +  +K
Sbjct: 348 WRLDQRVIALRETPVEVHYESVGTCYEIYGHYLIVRSLK 386