BLASTX nr result
ID: Catharanthus23_contig00040705
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Catharanthus23_contig00040705
(289 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|ABA96807.1| retrotransposon protein, putative, Ty1-copia subc... 51 3e-07
gb|ABA94730.1| retrotransposon protein, putative, unclassified [... 57 3e-07
gb|AAV31277.1| putative polyprotein [Oryza sativa Japonica Group] 52 3e-07
gb|ABF95048.1| retrotransposon protein, putative, unclassified [... 54 3e-07
gb|AAV44188.1| putative polyprotein [Oryza sativa Japonica Group] 54 4e-07
gb|ABA91220.1| retrotransposon protein, putative, unclassified [... 55 4e-07
emb|CAH66492.1| H0321H01.1 [Oryza sativa Indica Group] gi|116309... 54 4e-07
gb|ABA98121.1| retrotransposon protein, putative, Ty1-copia subc... 54 4e-07
gb|AAD20307.1| copia-type pol polyprotein [Zea mays] 59 5e-07
gb|ABD32582.1| Integrase, catalytic region; Zinc finger, CCHC-ty... 55 6e-07
ref|XP_002447687.1| hypothetical protein SORBIDRAFT_06g013016 [S... 54 8e-07
gb|AAL76004.1|AF466646_12 putative gag-pol polyprotein [Zea mays] 59 9e-07
gb|AAN40025.1| putative gag-pol polyprotein [Zea mays] 57 9e-07
gb|AAL66758.1|AF464738_9 putative pol protein [Zea mays] 58 1e-06
gb|AAP94599.1| putative copia-type pol polyprotein [Zea mays] 57 1e-06
gb|AAL66753.1|AF464738_4 putative copia-type pol polyprotein [Ze... 57 1e-06
gb|AEJ07943.1| Ji4 putative pol protein [Zea diploperennis] 57 1e-06
gb|ABF67921.1| Ji1 putative pol protein [Zea mays] 57 1e-06
gb|AAN40035.1| putative gag-pol polyprotein [Zea mays] 57 2e-06
gb|AEJ07909.1| Opie1 putative pol protein [Zea luxurians] 57 3e-06
>gb|ABA96807.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1196
Score = 50.8 bits (120), Expect(2) = 3e-07
Identities = 24/51 (47%), Positives = 35/51 (68%)
Frame = -3
Query: 260 FHKSLFNDIFIVQIYVDDIIF*VSDRMSCKEFRGLMQRKFEMSMMAS*TSF 108
F K + +D F+ QIYVDDIIF ++ + CKEF +M R+F+MSM+ + F
Sbjct: 866 FTKIIGDDFFVCQIYVDDIIFGSTNEVFCKEFGDMMSREFKMSMIGELSFF 916
Score = 29.3 bits (64), Expect(2) = 3e-07
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = -1
Query: 106 GLQIRPMKERMDTSQTKYVKGRIK 35
G QI+ +K+R SQTKY+K +K
Sbjct: 918 GFQIKQLKDRTFVSQTKYIKDLLK 941
>gb|ABA94730.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1890
Score = 57.0 bits (136), Expect(2) = 3e-07
Identities = 28/51 (54%), Positives = 34/51 (66%)
Frame = -3
Query: 260 FHKSLFNDIFIVQIYVDDIIF*VSDRMSCKEFRGLMQRKFEMSMMAS*TSF 108
F K D+FI QIYVDDIIF ++ CKEF G+M ++FEMSMM T F
Sbjct: 1315 FTKKFKKDLFICQIYVDDIIFGSTNASFCKEFSGIMTKRFEMSMMGEITFF 1365
Score = 22.7 bits (47), Expect(2) = 3e-07
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -1
Query: 103 LQIRPMKERMDTSQTKYVKGRIK 35
LQ++ ++ SQTKYVK +K
Sbjct: 1368 LQVKQAQDSTFISQTKYVKDILK 1390
>gb|AAV31277.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1577
Score = 52.4 bits (124), Expect(2) = 3e-07
Identities = 25/51 (49%), Positives = 35/51 (68%)
Frame = -3
Query: 260 FHKSLFNDIFIVQIYVDDIIF*VSDRMSCKEFRGLMQRKFEMSMMAS*TSF 108
F K + +D F+ QIYVDDIIF ++ + CKEF +M R+FEMSM+ + F
Sbjct: 1247 FTKIIGDDFFVYQIYVDDIIFGSTNEVFCKEFGDMMSREFEMSMIGELSFF 1297
Score = 27.3 bits (59), Expect(2) = 3e-07
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -1
Query: 106 GLQIRPMKERMDTSQTKYVKGRIK 35
GLQI+ +K SQTKY+K +K
Sbjct: 1299 GLQIKQLKNGTFVSQTKYIKDLLK 1322
>gb|ABF95048.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1450
Score = 53.5 bits (127), Expect(2) = 3e-07
Identities = 26/51 (50%), Positives = 34/51 (66%)
Frame = -3
Query: 260 FHKSLFNDIFIVQIYVDDIIF*VSDRMSCKEFRGLMQRKFEMSMMAS*TSF 108
F K N++FI QIYVDDIIF ++ C+EF +M ++FEMSMM T F
Sbjct: 1241 FTKKFENNLFICQIYVDDIIFGSTNASFCEEFSSIMTKRFEMSMMGELTFF 1291
Score = 26.2 bits (56), Expect(2) = 3e-07
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -1
Query: 106 GLQIRPMKERMDTSQTKYVKGRIK 35
GLQ++ +E SQTKYVK +K
Sbjct: 1293 GLQVKQAQEGTFISQTKYVKDIVK 1316
>gb|AAV44188.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 2049
Score = 53.5 bits (127), Expect(2) = 4e-07
Identities = 26/51 (50%), Positives = 34/51 (66%)
Frame = -3
Query: 260 FHKSLFNDIFIVQIYVDDIIF*VSDRMSCKEFRGLMQRKFEMSMMAS*TSF 108
F K +D+FI QIYVDDIIF ++ C+EF +M ++FEMSMM T F
Sbjct: 1399 FTKKFKSDLFICQIYVDDIIFGSTNASFCEEFSSIMTKRFEMSMMGELTFF 1449
Score = 25.8 bits (55), Expect(2) = 4e-07
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -1
Query: 106 GLQIRPMKERMDTSQTKYVKGRIK 35
GLQ++ +E SQTKYVK +K
Sbjct: 1451 GLQVKQAQEGTFISQTKYVKDILK 1474
>gb|ABA91220.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1860
Score = 54.7 bits (130), Expect(2) = 4e-07
Identities = 26/51 (50%), Positives = 34/51 (66%)
Frame = -3
Query: 260 FHKSLFNDIFIVQIYVDDIIF*VSDRMSCKEFRGLMQRKFEMSMMAS*TSF 108
F K +D+FI QIYVDDIIF ++ C+EF +M ++FEMSMM T F
Sbjct: 1071 FTKKFMSDLFICQIYVDDIIFGSTNASFCEEFSSIMTKRFEMSMMGELTFF 1121
Score = 24.6 bits (52), Expect(2) = 4e-07
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = -1
Query: 106 GLQIRPMKERMDTSQTKYVKGRIK 35
GLQ++ E SQTKYVK +K
Sbjct: 1123 GLQVKQALEGTFISQTKYVKDILK 1146
>emb|CAH66492.1| H0321H01.1 [Oryza sativa Indica Group] gi|116309443|emb|CAH66516.1|
OSIGBa0142C11.4 [Oryza sativa Indica Group]
Length = 1566
Score = 53.5 bits (127), Expect(2) = 4e-07
Identities = 26/51 (50%), Positives = 34/51 (66%)
Frame = -3
Query: 260 FHKSLFNDIFIVQIYVDDIIF*VSDRMSCKEFRGLMQRKFEMSMMAS*TSF 108
F K +D+FI QIYVDDIIF ++ C+EF +M ++FEMSMM T F
Sbjct: 1291 FTKKFKSDLFICQIYVDDIIFGSTNASFCEEFSSIMTKRFEMSMMVELTFF 1341
Score = 25.8 bits (55), Expect(2) = 4e-07
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -1
Query: 106 GLQIRPMKERMDTSQTKYVKGRIK 35
GLQ++ +E SQTKYVK +K
Sbjct: 1343 GLQVKQAQEGTFISQTKYVKDILK 1366
>gb|ABA98121.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 613
Score = 53.5 bits (127), Expect(2) = 4e-07
Identities = 26/51 (50%), Positives = 34/51 (66%)
Frame = -3
Query: 260 FHKSLFNDIFIVQIYVDDIIF*VSDRMSCKEFRGLMQRKFEMSMMAS*TSF 108
F K +D+FI QIYVDDIIF ++ C+EF +M ++FEMSMM T F
Sbjct: 459 FTKKFKSDLFICQIYVDDIIFGSTNASFCEEFSSIMTKRFEMSMMGELTFF 509
Score = 25.8 bits (55), Expect(2) = 4e-07
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -1
Query: 106 GLQIRPMKERMDTSQTKYVKGRIK 35
GLQ++ +E SQTKYVK +K
Sbjct: 511 GLQVKQAQEGTFISQTKYVKDILK 534
>gb|AAD20307.1| copia-type pol polyprotein [Zea mays]
Length = 1063
Score = 59.3 bits (142), Expect = 5e-07
Identities = 35/93 (37%), Positives = 53/93 (56%), Gaps = 8/93 (8%)
Frame = -3
Query: 260 FHKSLFNDIFIVQIYVDDIIF*VSDRMSCKEFRGLMQRKFEMSMMAS*TSFWITNKADER 81
F K+L ND+F+ QIYVDDIIF +++ +C+EF +M +KFEMSMM +++ + +
Sbjct: 732 FTKTLENDLFVCQIYVDDIIFGSTNKSTCEEFSRIMTQKFEMSMMGE-LKYFLGFQVKQL 790
Query: 80 TDGYKSN*VCQRTYQ--------MTGANPSRTP 6
+G +CQ Y M A P +TP
Sbjct: 791 QEG---TFICQTKYTQDILTKFGMKDAKPIKTP 820
>gb|ABD32582.1| Integrase, catalytic region; Zinc finger, CCHC-type; Peptidase
aspartic, catalytic [Medicago truncatula]
Length = 1715
Score = 55.1 bits (131), Expect(2) = 6e-07
Identities = 28/45 (62%), Positives = 33/45 (73%)
Frame = -3
Query: 260 FHKSLFNDIFIVQIYVDDIIF*VSDRMSCKEFRGLMQRKFEMSMM 126
F ++L DI IVQIYVDDIIF ++ CKEF LMQ +FEMSMM
Sbjct: 1387 FRRTLKKDILIVQIYVDDIIFGSTNASLCKEFSKLMQDEFEMSMM 1431
Score = 23.9 bits (50), Expect(2) = 6e-07
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -1
Query: 106 GLQIRPMKERMDTSQTKYVKGRIK 35
G+QI KE + QTKY K +K
Sbjct: 1439 GIQINQSKEGVYVHQTKYTKELLK 1462
>ref|XP_002447687.1| hypothetical protein SORBIDRAFT_06g013016 [Sorghum bicolor]
gi|241938870|gb|EES12015.1| hypothetical protein
SORBIDRAFT_06g013016 [Sorghum bicolor]
Length = 319
Score = 54.3 bits (129), Expect(2) = 8e-07
Identities = 24/45 (53%), Positives = 35/45 (77%)
Frame = -3
Query: 260 FHKSLFNDIFIVQIYVDDIIF*VSDRMSCKEFRGLMQRKFEMSMM 126
F + + NDIF+ QIYVDDIIF ++++ C+EF +M ++FEMSMM
Sbjct: 8 FTRKIGNDIFVCQIYVDDIIFGSTNQVFCEEFSRIMTKRFEMSMM 52
Score = 24.3 bits (51), Expect(2) = 8e-07
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -1
Query: 106 GLQIRPMKERMDTSQTKYVKGRIK*QEQTRAE 11
G QI+ +KE SQTKY +K + +A+
Sbjct: 60 GFQIKQLKEGTFISQTKYTLDMLKKFDMEKAK 91
>gb|AAL76004.1|AF466646_12 putative gag-pol polyprotein [Zea mays]
Length = 1694
Score = 58.5 bits (140), Expect = 9e-07
Identities = 35/93 (37%), Positives = 52/93 (55%), Gaps = 8/93 (8%)
Frame = -3
Query: 260 FHKSLFNDIFIVQIYVDDIIF*VSDRMSCKEFRGLMQRKFEMSMMAS*TSFWITNKADER 81
F K+L ND+F+ QIYVDDIIF ++ +C+EF +M +KFEMSMM +++ + +
Sbjct: 1532 FTKTLDNDLFVCQIYVDDIIFGSTNESTCEEFSRIMTQKFEMSMMGE-LKYFLGFQVKQL 1590
Query: 80 TDGYKSN*VCQRTYQ--------MTGANPSRTP 6
+G +CQ Y M A P +TP
Sbjct: 1591 QEG---TFICQTKYTQDILTKFGMKDAKPIKTP 1620
>gb|AAN40025.1| putative gag-pol polyprotein [Zea mays]
Length = 1892
Score = 56.6 bits (135), Expect(2) = 9e-07
Identities = 26/45 (57%), Positives = 35/45 (77%)
Frame = -3
Query: 260 FHKSLFNDIFIVQIYVDDIIF*VSDRMSCKEFRGLMQRKFEMSMM 126
F K+L ND+F+ QIYVDDIIF ++ +C+EF +M +KFEMSMM
Sbjct: 1561 FTKTLENDLFVCQIYVDDIIFGSTNESTCEEFSRIMTQKFEMSMM 1605
Score = 21.6 bits (44), Expect(2) = 9e-07
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = -1
Query: 106 GLQIRPMKERMDTSQTKYVK 47
G Q++ ++E SQTKY +
Sbjct: 1613 GFQVKQLREGTFISQTKYTQ 1632
>gb|AAL66758.1|AF464738_9 putative pol protein [Zea mays]
Length = 313
Score = 58.2 bits (139), Expect = 1e-06
Identities = 35/90 (38%), Positives = 51/90 (56%), Gaps = 5/90 (5%)
Frame = -3
Query: 260 FHKSLFNDIFIVQIYVDDIIF*VSDRMSCKEFRGLMQRKFEMSMMAS*TSFWITNKADER 81
F K+ D+F+ QIYVDDIIF +++ SC+EF +M KFEMSMM T+F + + +
Sbjct: 73 FTKTCDGDLFVCQIYVDDIIFGSTNQKSCEEFSRVMMHKFEMSMMGELTNF-LGFQVKQL 131
Query: 80 TDG-----YKSN*VCQRTYQMTGANPSRTP 6
DG K + + M A P++TP
Sbjct: 132 KDGTFISQMKHTQDLLKRFGMKDAKPAKTP 161
>gb|AAP94599.1| putative copia-type pol polyprotein [Zea mays]
Length = 1760
Score = 56.6 bits (135), Expect(2) = 1e-06
Identities = 26/45 (57%), Positives = 35/45 (77%)
Frame = -3
Query: 260 FHKSLFNDIFIVQIYVDDIIF*VSDRMSCKEFRGLMQRKFEMSMM 126
F K+L ND+F+ QIYVDDIIF ++ +C+EF +M +KFEMSMM
Sbjct: 1429 FTKTLENDLFVCQIYVDDIIFGSTNESTCEEFSRIMTQKFEMSMM 1473
Score = 21.2 bits (43), Expect(2) = 1e-06
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = -1
Query: 106 GLQIRPMKERMDTSQTKYVK 47
G Q++ ++E SQTKY +
Sbjct: 1481 GFQVKQLQEGTFISQTKYTQ 1500
>gb|AAL66753.1|AF464738_4 putative copia-type pol polyprotein [Zea mays]
Length = 1604
Score = 56.6 bits (135), Expect(2) = 1e-06
Identities = 26/45 (57%), Positives = 35/45 (77%)
Frame = -3
Query: 260 FHKSLFNDIFIVQIYVDDIIF*VSDRMSCKEFRGLMQRKFEMSMM 126
F K+L ND+F+ QIYVDDIIF ++ +C+EF +M +KFEMSMM
Sbjct: 1429 FTKTLENDLFVCQIYVDDIIFGSTNESTCEEFSRIMTQKFEMSMM 1473
Score = 21.2 bits (43), Expect(2) = 1e-06
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = -1
Query: 106 GLQIRPMKERMDTSQTKYVK 47
G Q++ ++E SQTKY +
Sbjct: 1481 GFQVKQLQEGTFISQTKYTQ 1500
>gb|AEJ07943.1| Ji4 putative pol protein [Zea diploperennis]
Length = 1063
Score = 56.6 bits (135), Expect(2) = 1e-06
Identities = 26/45 (57%), Positives = 35/45 (77%)
Frame = -3
Query: 260 FHKSLFNDIFIVQIYVDDIIF*VSDRMSCKEFRGLMQRKFEMSMM 126
F K+L ND+F+ QIYVDDIIF ++ +C+EF +M +KFEMSMM
Sbjct: 732 FTKTLDNDLFVCQIYVDDIIFGSTNESTCEEFSRIMTQKFEMSMM 776
Score = 21.2 bits (43), Expect(2) = 1e-06
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = -1
Query: 106 GLQIRPMKERMDTSQTKYVK 47
G Q++ ++E SQTKY +
Sbjct: 784 GFQVKQLQEGTFISQTKYTQ 803
>gb|ABF67921.1| Ji1 putative pol protein [Zea mays]
Length = 1063
Score = 56.6 bits (135), Expect(2) = 1e-06
Identities = 26/45 (57%), Positives = 35/45 (77%)
Frame = -3
Query: 260 FHKSLFNDIFIVQIYVDDIIF*VSDRMSCKEFRGLMQRKFEMSMM 126
F K+L ND+F+ QIYVDDIIF ++ +C+EF +M +KFEMSMM
Sbjct: 732 FTKTLENDLFVCQIYVDDIIFGSTNESTCEEFSRIMTQKFEMSMM 776
Score = 21.2 bits (43), Expect(2) = 1e-06
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = -1
Query: 106 GLQIRPMKERMDTSQTKYVK 47
G Q++ ++E SQTKY +
Sbjct: 784 GFQVKQLQEGTFISQTKYTQ 803
>gb|AAN40035.1| putative gag-pol polyprotein [Zea mays]
Length = 1706
Score = 56.6 bits (135), Expect(2) = 2e-06
Identities = 26/45 (57%), Positives = 35/45 (77%)
Frame = -3
Query: 260 FHKSLFNDIFIVQIYVDDIIF*VSDRMSCKEFRGLMQRKFEMSMM 126
F K+L ND+F+ QIYVDDIIF ++ +C+EF +M +KFEMSMM
Sbjct: 1579 FTKTLNNDLFVCQIYVDDIIFGSTNESTCEEFSRIMTQKFEMSMM 1623
Score = 20.4 bits (41), Expect(2) = 2e-06
Identities = 8/20 (40%), Positives = 12/20 (60%)
Frame = -1
Query: 106 GLQIRPMKERMDTSQTKYVK 47
G Q+ ++E SQTKY +
Sbjct: 1631 GFQVEQLQEGTFISQTKYTQ 1650
>gb|AEJ07909.1| Opie1 putative pol protein [Zea luxurians]
Length = 830
Score = 57.0 bits (136), Expect = 3e-06
Identities = 34/90 (37%), Positives = 52/90 (57%), Gaps = 5/90 (5%)
Frame = -3
Query: 260 FHKSLFNDIFIVQIYVDDIIF*VSDRMSCKEFRGLMQRKFEMSMMAS*TSFWITNKADER 81
F K+ D+F+ QIYVDDIIF +++ SC+EF +M +KFEMSMM +F++ + +
Sbjct: 718 FTKTCDGDLFVCQIYVDDIIFGSTNQKSCEEFSRVMTQKFEMSMMGE-LNFFLGFQVKQL 776
Query: 80 TDG-----YKSN*VCQRTYQMTGANPSRTP 6
DG K + + M A P++TP
Sbjct: 777 KDGTFISQTKYTQDLLKRFGMKDAKPAKTP 806