BLASTX nr result
ID: Catharanthus23_contig00039852
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Catharanthus23_contig00039852
(263 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|P36494.1|CB4_SPIOL RecName: Full=Chlorophyll a-b binding prot... 95 9e-18
dbj|BAI52949.1| light-harvesting complex II protein [Citrullus l... 95 9e-18
gb|AAD27882.2|AF139470_1 chlorophyll a/b-binding protein CP24 pr... 94 2e-17
ref|NP_001236415.1| uncharacterized protein LOC100527463 [Glycin... 94 2e-17
ref|XP_003531552.1| PREDICTED: chlorophyll a-b binding protein C... 94 2e-17
gb|ACU15016.1| unknown [Glycine max] 94 2e-17
gb|EOX98842.1| Light harvesting complex photosystem II subunit 6... 92 6e-17
gb|ABG73416.1| chloroplast pigment-binding protein CP24 [Nicotia... 92 6e-17
ref|XP_004230588.1| PREDICTED: chlorophyll a-b binding protein C... 92 7e-17
ref|XP_006351799.1| PREDICTED: chlorophyll a-b binding protein C... 92 7e-17
gb|AFK41475.1| unknown [Lotus japonicus] 91 1e-16
emb|CBI20065.3| unnamed protein product [Vitis vinifera] 91 1e-16
ref|XP_002298178.1| chlorophyll A-B binding family protein [Popu... 91 1e-16
ref|XP_002263201.1| PREDICTED: chlorophyll a-b binding protein C... 91 1e-16
gb|ESW31081.1| hypothetical protein PHAVU_002G207500g [Phaseolus... 91 2e-16
ref|XP_002303160.2| hypothetical protein POPTR_0003s01450g [Popu... 91 2e-16
ref|XP_006385220.1| hypothetical protein POPTR_0003s01450g [Popu... 91 2e-16
gb|AGV54678.1| chlorophyll A/B binding protein CP24 10A chloropl... 91 2e-16
ref|XP_006494019.1| PREDICTED: chlorophyll a-b binding protein C... 91 2e-16
ref|XP_006423921.1| hypothetical protein CICLE_v10029116mg [Citr... 91 2e-16
>sp|P36494.1|CB4_SPIOL RecName: Full=Chlorophyll a-b binding protein CP24, chloroplastic;
Flags: Precursor gi|437991|emb|CAA81105.1| 20 kDa
protein of CP24 precursor protein [Spinacia oleracea]
Length = 261
Score = 95.1 bits (235), Expect = 9e-18
Identities = 51/86 (59%), Positives = 60/86 (69%), Gaps = 6/86 (6%)
Frame = +1
Query: 22 MAVATNSAVVLN---APFLSGGKRSQS--LFXXXXXXXXXXXXXRKLVIVAAAGA-KKSW 183
MA AT++ ++N +PFLSGGK+S LF RKLV+VAAA A KKSW
Sbjct: 1 MAAATSATAIVNGFTSPFLSGGKKSSQSLLFVNSKVGAGVSTTSRKLVVVAAAAAPKKSW 60
Query: 184 IPAVKGGGNLVDPEWLDGSLPGDYGF 261
IPAVKGGGN +DPEWLDGSLPGD+GF
Sbjct: 61 IPAVKGGGNFLDPEWLDGSLPGDFGF 86
>dbj|BAI52949.1| light-harvesting complex II protein [Citrullus lanatus subsp.
vulgaris]
Length = 255
Score = 95.1 bits (235), Expect = 9e-18
Identities = 50/81 (61%), Positives = 56/81 (69%), Gaps = 3/81 (3%)
Frame = +1
Query: 28 VATNSAVVLN---APFLSGGKRSQSLFXXXXXXXXXXXXXRKLVIVAAAGAKKSWIPAVK 198
+A S VLN +PFL GG R+Q+L RKLV+VAAA KKSWIPAVK
Sbjct: 1 MAATSGTVLNGLGSPFLRGGSRTQTLLAGARGGVNVVGS-RKLVVVAAAQPKKSWIPAVK 59
Query: 199 GGGNLVDPEWLDGSLPGDYGF 261
GGGNL+DPEWLDGSLPGDYGF
Sbjct: 60 GGGNLIDPEWLDGSLPGDYGF 80
>gb|AAD27882.2|AF139470_1 chlorophyll a/b-binding protein CP24 precursor [Vigna radiata]
Length = 258
Score = 94.0 bits (232), Expect = 2e-17
Identities = 49/83 (59%), Positives = 58/83 (69%), Gaps = 3/83 (3%)
Frame = +1
Query: 22 MAVATNSAVV--LNAPFLSGGKRSQSLFXXXXXXXXXXXXX-RKLVIVAAAGAKKSWIPA 192
MA AT+ AV+ L + FLSGG RSQ+L R+L++VAAA KKSWIP
Sbjct: 1 MAAATSGAVLNGLGSSFLSGGSRSQTLLATSIGGKVGVAVSPRRLIVVAAAAPKKSWIPG 60
Query: 193 VKGGGNLVDPEWLDGSLPGDYGF 261
V+GGGNLVDPEWLDGSLPGD+GF
Sbjct: 61 VRGGGNLVDPEWLDGSLPGDFGF 83
>ref|NP_001236415.1| uncharacterized protein LOC100527463 [Glycine max]
gi|255632410|gb|ACU16555.1| unknown [Glycine max]
Length = 259
Score = 94.0 bits (232), Expect = 2e-17
Identities = 49/85 (57%), Positives = 58/85 (68%), Gaps = 5/85 (5%)
Frame = +1
Query: 22 MAVATNSAVV--LNAPFLSGGKRSQSLFXXXXXXXXXXXXX---RKLVIVAAAGAKKSWI 186
MA AT+ AV+ L + FLSGG RSQ+L R+L++VAAA KKSW+
Sbjct: 1 MAAATSGAVLNGLGSSFLSGGNRSQTLLATAIGGKVGAAVTVNPRRLIVVAAAAPKKSWL 60
Query: 187 PAVKGGGNLVDPEWLDGSLPGDYGF 261
P V+GGGNLVDPEWLDGSLPGDYGF
Sbjct: 61 PGVRGGGNLVDPEWLDGSLPGDYGF 85
>ref|XP_003531552.1| PREDICTED: chlorophyll a-b binding protein CP24 10A, chloroplastic
[Glycine max]
Length = 261
Score = 93.6 bits (231), Expect = 2e-17
Identities = 49/86 (56%), Positives = 58/86 (67%), Gaps = 6/86 (6%)
Frame = +1
Query: 22 MAVATNSAVV--LNAPFLSGGKRSQSLFXXXXXXXXXXXXX----RKLVIVAAAGAKKSW 183
MA AT+ AV+ L + FLSGG RSQ+L R+L++VAAA KKSW
Sbjct: 1 MAAATSGAVLNGLGSSFLSGGNRSQTLLATAIGGKVGAAAVTVSPRRLIVVAAAAPKKSW 60
Query: 184 IPAVKGGGNLVDPEWLDGSLPGDYGF 261
+P V+GGGNLVDPEWLDGSLPGDYGF
Sbjct: 61 LPGVRGGGNLVDPEWLDGSLPGDYGF 86
>gb|ACU15016.1| unknown [Glycine max]
Length = 247
Score = 93.6 bits (231), Expect = 2e-17
Identities = 49/86 (56%), Positives = 58/86 (67%), Gaps = 6/86 (6%)
Frame = +1
Query: 22 MAVATNSAVV--LNAPFLSGGKRSQSLFXXXXXXXXXXXXX----RKLVIVAAAGAKKSW 183
MA AT+ AV+ L + FLSGG RSQ+L R+L++VAAA KKSW
Sbjct: 1 MAAATSGAVLNGLGSSFLSGGNRSQTLLATAIGGKVGAAAVTVSPRRLIVVAAAAPKKSW 60
Query: 184 IPAVKGGGNLVDPEWLDGSLPGDYGF 261
+P V+GGGNLVDPEWLDGSLPGDYGF
Sbjct: 61 LPGVRGGGNLVDPEWLDGSLPGDYGF 86
>gb|EOX98842.1| Light harvesting complex photosystem II subunit 6 [Theobroma cacao]
Length = 254
Score = 92.4 bits (228), Expect = 6e-17
Identities = 47/79 (59%), Positives = 55/79 (69%), Gaps = 2/79 (2%)
Frame = +1
Query: 31 ATNSAVV--LNAPFLSGGKRSQSLFXXXXXXXXXXXXXRKLVIVAAAGAKKSWIPAVKGG 204
AT+ V+ L +PFL GGKRSQ+L RKLV+VAAA KKSWIP V+GG
Sbjct: 3 ATSGTVINGLGSPFLCGGKRSQALLGARVATPASGT--RKLVVVAAAAPKKSWIPGVRGG 60
Query: 205 GNLVDPEWLDGSLPGDYGF 261
GN ++PEWLDGSLPGDYGF
Sbjct: 61 GNFINPEWLDGSLPGDYGF 79
>gb|ABG73416.1| chloroplast pigment-binding protein CP24 [Nicotiana tabacum]
Length = 257
Score = 92.4 bits (228), Expect = 6e-17
Identities = 51/82 (62%), Positives = 56/82 (68%), Gaps = 4/82 (4%)
Frame = +1
Query: 28 VATNSAVVLN---APFLSGGKRSQSLFXXXXXXXXXXXXXRKLVIVAAAGA-KKSWIPAV 195
+AT SA VLN + FL+GGK SQ+L K IVAAA A KKSWIPAV
Sbjct: 1 MATTSAAVLNGLSSSFLTGGKNSQALLGAPVAARIGGLATPKRCIVAAAAAPKKSWIPAV 60
Query: 196 KGGGNLVDPEWLDGSLPGDYGF 261
KGGGNL+DPEWLDGSLPGDYGF
Sbjct: 61 KGGGNLLDPEWLDGSLPGDYGF 82
>ref|XP_004230588.1| PREDICTED: chlorophyll a-b binding protein CP24 10A,
chloroplastic-like [Solanum lycopersicum]
gi|115833|sp|P27524.1|CB4A_SOLLC RecName:
Full=Chlorophyll a-b binding protein CP24 10A,
chloroplastic; Short=CAB-10A; Short=LHCP; Flags:
Precursor gi|170394|gb|AAA34143.1| a-binding protein
[Solanum lycopersicum]
Length = 256
Score = 92.0 bits (227), Expect = 7e-17
Identities = 48/81 (59%), Positives = 54/81 (66%), Gaps = 3/81 (3%)
Frame = +1
Query: 28 VATNSAVVLN---APFLSGGKRSQSLFXXXXXXXXXXXXXRKLVIVAAAGAKKSWIPAVK 198
+AT SA VLN + FL+GG +SQ+L K V AA AKKSWIPAV+
Sbjct: 1 MATTSAAVLNGLSSSFLTGGNKSQALLAAPLAARVGGAATPKRFTVLAAAAKKSWIPAVR 60
Query: 199 GGGNLVDPEWLDGSLPGDYGF 261
GGGNLVDPEWLDGSLPGDYGF
Sbjct: 61 GGGNLVDPEWLDGSLPGDYGF 81
>ref|XP_006351799.1| PREDICTED: chlorophyll a-b binding protein CP24 10A,
chloroplastic-like [Solanum tuberosum]
Length = 256
Score = 92.0 bits (227), Expect = 7e-17
Identities = 47/81 (58%), Positives = 54/81 (66%), Gaps = 3/81 (3%)
Frame = +1
Query: 28 VATNSAVVLN---APFLSGGKRSQSLFXXXXXXXXXXXXXRKLVIVAAAGAKKSWIPAVK 198
+AT SA VLN + FL+GGK+SQ+L K IV AA KKSW+P V+
Sbjct: 1 MATTSAAVLNGLSSSFLTGGKKSQALLAAPLAARVGGAATPKRFIVVAAAPKKSWLPGVR 60
Query: 199 GGGNLVDPEWLDGSLPGDYGF 261
GGGNLVDPEWLDGSLPGDYGF
Sbjct: 61 GGGNLVDPEWLDGSLPGDYGF 81
>gb|AFK41475.1| unknown [Lotus japonicus]
Length = 260
Score = 91.3 bits (225), Expect = 1e-16
Identities = 51/85 (60%), Positives = 55/85 (64%), Gaps = 5/85 (5%)
Frame = +1
Query: 22 MAVATNSAVVLN---APFLSGGKRSQSLFXXXXXXXXXXXXXRKLVIVAAAGA--KKSWI 186
MA A S VLN + FL GG RSQ+L K +IVAAA A KKSWI
Sbjct: 1 MAAAATSGAVLNGLGSSFLCGGNRSQTLLASAAGAKAGAAVSPKRLIVAAAAAAPKKSWI 60
Query: 187 PAVKGGGNLVDPEWLDGSLPGDYGF 261
PAVKGGGNLVDPEWLDGSLPGD+GF
Sbjct: 61 PAVKGGGNLVDPEWLDGSLPGDFGF 85
>emb|CBI20065.3| unnamed protein product [Vitis vinifera]
Length = 198
Score = 91.3 bits (225), Expect = 1e-16
Identities = 50/83 (60%), Positives = 57/83 (68%), Gaps = 5/83 (6%)
Frame = +1
Query: 28 VATNSAVVLN---APFLSGGKRSQSLFXXXXXXXXXXXXX--RKLVIVAAAGAKKSWIPA 192
+A SA VLN +PFL+GGKRSQSL R+L++VAAA KKSW+P
Sbjct: 1 MAATSAAVLNGLGSPFLTGGKRSQSLLSAGVAAKAGAAVPAPRRLIVVAAA-PKKSWLPG 59
Query: 193 VKGGGNLVDPEWLDGSLPGDYGF 261
VK GGNLVDPEWLDGSLPGDYGF
Sbjct: 60 VKAGGNLVDPEWLDGSLPGDYGF 82
>ref|XP_002298178.1| chlorophyll A-B binding family protein [Populus trichocarpa]
gi|118486723|gb|ABK95197.1| unknown [Populus
trichocarpa] gi|222845436|gb|EEE82983.1| chlorophyll A-B
binding family protein [Populus trichocarpa]
Length = 257
Score = 91.3 bits (225), Expect = 1e-16
Identities = 50/80 (62%), Positives = 56/80 (70%), Gaps = 3/80 (3%)
Frame = +1
Query: 31 ATNSAVV--LNAPFLSGGKRSQSLFXXXXXXXXXXXXX-RKLVIVAAAGAKKSWIPAVKG 201
AT AV+ L + FL GGKR+Q+L RKLV+VAAA KKSWIPAVKG
Sbjct: 3 ATAGAVLNGLGSSFLCGGKRNQALLGIGASRTGSFPVGTRKLVVVAAAQPKKSWIPAVKG 62
Query: 202 GGNLVDPEWLDGSLPGDYGF 261
GG+LVDPEWLDGSLPGDYGF
Sbjct: 63 GGSLVDPEWLDGSLPGDYGF 82
>ref|XP_002263201.1| PREDICTED: chlorophyll a-b binding protein CP24 10A, chloroplastic
[Vitis vinifera] gi|147804704|emb|CAN71620.1|
hypothetical protein VITISV_015544 [Vitis vinifera]
Length = 257
Score = 91.3 bits (225), Expect = 1e-16
Identities = 50/83 (60%), Positives = 57/83 (68%), Gaps = 5/83 (6%)
Frame = +1
Query: 28 VATNSAVVLN---APFLSGGKRSQSLFXXXXXXXXXXXXX--RKLVIVAAAGAKKSWIPA 192
+A SA VLN +PFL+GGKRSQSL R+L++VAAA KKSW+P
Sbjct: 1 MAATSAAVLNGLGSPFLTGGKRSQSLLSAGVAAKAGAAVPAPRRLIVVAAA-PKKSWLPG 59
Query: 193 VKGGGNLVDPEWLDGSLPGDYGF 261
VK GGNLVDPEWLDGSLPGDYGF
Sbjct: 60 VKAGGNLVDPEWLDGSLPGDYGF 82
>gb|ESW31081.1| hypothetical protein PHAVU_002G207500g [Phaseolus vulgaris]
Length = 258
Score = 90.9 bits (224), Expect = 2e-16
Identities = 49/83 (59%), Positives = 56/83 (67%), Gaps = 3/83 (3%)
Frame = +1
Query: 22 MAVATNSAVV--LNAPFLSGGKRSQSLFXXXXXXXXXXXXXRKLVIVAAAGA-KKSWIPA 192
MAVAT+ AV+ + FL GGKRSQ+L K +IVA A A KKSWIP+
Sbjct: 1 MAVATSGAVLNRFGSNFLCGGKRSQALLAAGIGAKVGAAVNPKRLIVAVAAAPKKSWIPS 60
Query: 193 VKGGGNLVDPEWLDGSLPGDYGF 261
VKGGGN +DPEWLDGSLPGDYGF
Sbjct: 61 VKGGGNFIDPEWLDGSLPGDYGF 83
>ref|XP_002303160.2| hypothetical protein POPTR_0003s01450g [Populus trichocarpa]
gi|550342133|gb|EEE78139.2| hypothetical protein
POPTR_0003s01450g [Populus trichocarpa]
Length = 334
Score = 90.9 bits (224), Expect = 2e-16
Identities = 50/85 (58%), Positives = 58/85 (68%), Gaps = 2/85 (2%)
Frame = +1
Query: 13 KREMAVATNSAVV-LNAPFLSGGKRSQSLFXXXXXXXXXXXXX-RKLVIVAAAGAKKSWI 186
+REMA A+ + + L + FL GGKRS++L RKL IVAAA KKSWI
Sbjct: 75 EREMAAASGAVLNGLGSSFLCGGKRSRALSGIGATGIGSCSVGARKLTIVAAAQPKKSWI 134
Query: 187 PAVKGGGNLVDPEWLDGSLPGDYGF 261
PAVKGGG+ VDPEWLDGSLPGDYGF
Sbjct: 135 PAVKGGGSFVDPEWLDGSLPGDYGF 159
>ref|XP_006385220.1| hypothetical protein POPTR_0003s01450g [Populus trichocarpa]
gi|550342132|gb|ERP63017.1| hypothetical protein
POPTR_0003s01450g [Populus trichocarpa]
Length = 261
Score = 90.9 bits (224), Expect = 2e-16
Identities = 50/85 (58%), Positives = 58/85 (68%), Gaps = 2/85 (2%)
Frame = +1
Query: 13 KREMAVATNSAVV-LNAPFLSGGKRSQSLFXXXXXXXXXXXXX-RKLVIVAAAGAKKSWI 186
+REMA A+ + + L + FL GGKRS++L RKL IVAAA KKSWI
Sbjct: 75 EREMAAASGAVLNGLGSSFLCGGKRSRALSGIGATGIGSCSVGARKLTIVAAAQPKKSWI 134
Query: 187 PAVKGGGNLVDPEWLDGSLPGDYGF 261
PAVKGGG+ VDPEWLDGSLPGDYGF
Sbjct: 135 PAVKGGGSFVDPEWLDGSLPGDYGF 159
>gb|AGV54678.1| chlorophyll A/B binding protein CP24 10A chloroplastic [Phaseolus
vulgaris] gi|561021646|gb|ESW20417.1| hypothetical
protein PHAVU_006G207300g [Phaseolus vulgaris]
Length = 258
Score = 90.9 bits (224), Expect = 2e-16
Identities = 47/83 (56%), Positives = 57/83 (68%), Gaps = 3/83 (3%)
Frame = +1
Query: 22 MAVATNSAVV--LNAPFLSGGKRSQSLFXXXXXXXXXXXXX-RKLVIVAAAGAKKSWIPA 192
MA AT+ AV+ L + FLSGG RSQ+L R+L++VAAA KKSW+P
Sbjct: 1 MAAATSGAVLNGLGSSFLSGGSRSQTLLATAIGGKLGVAVSPRRLIVVAAAAPKKSWLPG 60
Query: 193 VKGGGNLVDPEWLDGSLPGDYGF 261
V+ GGNLVDPEWLDGSLPGD+GF
Sbjct: 61 VRAGGNLVDPEWLDGSLPGDFGF 83
>ref|XP_006494019.1| PREDICTED: chlorophyll a-b binding protein CP24 10B,
chloroplastic-like [Citrus sinensis]
Length = 253
Score = 90.5 bits (223), Expect = 2e-16
Identities = 47/82 (57%), Positives = 58/82 (70%), Gaps = 2/82 (2%)
Frame = +1
Query: 22 MAVATNSAVV--LNAPFLSGGKRSQSLFXXXXXXXXXXXXXRKLVIVAAAGAKKSWIPAV 195
MA AT+ AV+ L + F++GGK+SQ+L +K V+VAA KKSWIPAV
Sbjct: 1 MAAATSGAVLNGLGSSFINGGKKSQALLAGTNRVTSS----KKSVVVAALPPKKSWIPAV 56
Query: 196 KGGGNLVDPEWLDGSLPGDYGF 261
KGGGNL++PEWLDGSLPGDYGF
Sbjct: 57 KGGGNLINPEWLDGSLPGDYGF 78
>ref|XP_006423921.1| hypothetical protein CICLE_v10029116mg [Citrus clementina]
gi|557525855|gb|ESR37161.1| hypothetical protein
CICLE_v10029116mg [Citrus clementina]
Length = 253
Score = 90.5 bits (223), Expect = 2e-16
Identities = 47/82 (57%), Positives = 58/82 (70%), Gaps = 2/82 (2%)
Frame = +1
Query: 22 MAVATNSAVV--LNAPFLSGGKRSQSLFXXXXXXXXXXXXXRKLVIVAAAGAKKSWIPAV 195
MA AT+ AV+ L + F++GGK+SQ+L +K V+VAA KKSWIPAV
Sbjct: 1 MAAATSGAVLNGLGSSFINGGKKSQALLAGTNRVTSS----KKSVVVAALPPKKSWIPAV 56
Query: 196 KGGGNLVDPEWLDGSLPGDYGF 261
KGGGNL++PEWLDGSLPGDYGF
Sbjct: 57 KGGGNLINPEWLDGSLPGDYGF 78