BLASTX nr result
ID: Catharanthus23_contig00039751
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Catharanthus23_contig00039751
(321 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAN71469.1| hypothetical protein VITISV_038993 [Vitis vinifera] 74 2e-11
emb|CAN64561.1| hypothetical protein VITISV_038232 [Vitis vinifera] 74 2e-11
gb|AAK43485.1|AC084807_10 polyprotein, putative [Arabidopsis tha... 72 8e-11
emb|CAN79393.1| hypothetical protein VITISV_010428 [Vitis vinifera] 72 1e-10
gb|AAD22324.1| putative retroelement pol polyprotein [Arabidopsi... 70 2e-10
gb|ABF94964.1| retrotransposon protein, putative, Ty1-copia subc... 70 3e-10
gb|AAU43956.1| unknown protein [Oryza sativa Japonica Group] gi|... 70 3e-10
emb|CAB46043.1| retrotransposon like protein [Arabidopsis thalia... 70 3e-10
ref|XP_004295686.1| PREDICTED: uncharacterized mitochondrial pro... 70 4e-10
ref|XP_006465491.1| PREDICTED: uncharacterized protein LOC102624... 69 6e-10
gb|ABA98049.1| retrotransposon protein, putative, Ty1-copia subc... 68 1e-09
gb|AAX96193.1| retrotransposon protein, putative, Ty1-copia sub-... 68 1e-09
emb|CAN77432.1| hypothetical protein VITISV_017814 [Vitis vinifera] 68 1e-09
gb|ABA98286.2| retrotransposon protein, putative, Ty1-copia subc... 68 1e-09
emb|CCH50966.1| T4.5 [Malus x robusta] 67 2e-09
gb|ABA97652.1| retrotransposon protein, putative, Ty1-copia subc... 66 4e-09
ref|XP_002444329.1| hypothetical protein SORBIDRAFT_07g020255 [S... 66 4e-09
emb|CAN75149.1| hypothetical protein VITISV_027193 [Vitis vinifera] 66 4e-09
gb|ABG22122.1| polyprotein [Prunus avium] 66 4e-09
gb|AAD17352.1| contains similarity to retrovirus-related polypro... 66 5e-09
>emb|CAN71469.1| hypothetical protein VITISV_038993 [Vitis vinifera]
Length = 428
Score = 74.3 bits (181), Expect = 2e-11
Identities = 37/61 (60%), Positives = 46/61 (75%), Gaps = 1/61 (1%)
Frame = +3
Query: 72 DLLGQFNMIGCKPCP-PITFGPRLSAHDGELLSNSKEYRSVVGGLQYLTFTRPDIAFAVN 248
DLL + +M KPCP P+ G +LSA+DG LS++ EYRS+VG LQYLT TRPDI +AVN
Sbjct: 141 DLLTRTHMQDSKPCPTPLASGSKLSAYDGAPLSDATEYRSIVGALQYLTLTRPDICYAVN 200
Query: 249 Q 251
Q
Sbjct: 201 Q 201
>emb|CAN64561.1| hypothetical protein VITISV_038232 [Vitis vinifera]
Length = 140
Score = 74.3 bits (181), Expect = 2e-11
Identities = 37/61 (60%), Positives = 46/61 (75%), Gaps = 1/61 (1%)
Frame = +3
Query: 72 DLLGQFNMIGCKPCP-PITFGPRLSAHDGELLSNSKEYRSVVGGLQYLTFTRPDIAFAVN 248
DLL + +M KPCP P+ G +LSA+DG LS++ EYRS+VG LQYLT TRPDI +AVN
Sbjct: 68 DLLTRTHMQDSKPCPTPLASGSKLSAYDGAPLSDATEYRSIVGALQYLTLTRPDICYAVN 127
Query: 249 Q 251
Q
Sbjct: 128 Q 128
>gb|AAK43485.1|AC084807_10 polyprotein, putative [Arabidopsis thaliana]
gi|225898008|dbj|BAH30336.1| hypothetical protein
[Arabidopsis thaliana]
Length = 1459
Score = 72.0 bits (175), Expect = 8e-11
Identities = 37/66 (56%), Positives = 47/66 (71%), Gaps = 1/66 (1%)
Frame = +3
Query: 57 KYIAADLLGQFNMIGCKP-CPPITFGPRLSAHDGELLSNSKEYRSVVGGLQYLTFTRPDI 233
KY+ DLL + NM+ KP P+ P+L+ H G L+++ EYRSVVG LQYL FTRPDI
Sbjct: 1197 KYMT-DLLAKHNMLDAKPVATPLPTSPKLTLHGGTKLNDASEYRSVVGSLQYLAFTRPDI 1255
Query: 234 AFAVNQ 251
AFAVN+
Sbjct: 1256 AFAVNR 1261
>emb|CAN79393.1| hypothetical protein VITISV_010428 [Vitis vinifera]
Length = 864
Score = 71.6 bits (174), Expect = 1e-10
Identities = 38/66 (57%), Positives = 44/66 (66%), Gaps = 1/66 (1%)
Frame = +3
Query: 57 KYIAADLLGQFNMIGCKPCP-PITFGPRLSAHDGELLSNSKEYRSVVGGLQYLTFTRPDI 233
KYI DLL Q M+ KPCP P++ LS HDG +L N +YRS VG LQY T TRPDI
Sbjct: 568 KYII-DLLTQATMLDAKPCPTPMSSNTNLSFHDGVVLENGSDYRSFVGALQYCTMTRPDI 626
Query: 234 AFAVNQ 251
FAVN+
Sbjct: 627 DFAVNK 632
>gb|AAD22324.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 387
Score = 70.5 bits (171), Expect = 2e-10
Identities = 35/66 (53%), Positives = 47/66 (71%), Gaps = 1/66 (1%)
Frame = +3
Query: 57 KYIAADLLGQFNMIGCKPCP-PITFGPRLSAHDGELLSNSKEYRSVVGGLQYLTFTRPDI 233
KYI DLL + +M+ KP P+ P+LS H G +L ++KEYR ++G LQYL+FTRPDI
Sbjct: 125 KYIT-DLLAKTHMLDAKPISTPMATTPKLSLHSGTILDDAKEYRMIIGSLQYLSFTRPDI 183
Query: 234 AFAVNQ 251
AF VN+
Sbjct: 184 AFVVNR 189
>gb|ABF94964.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 846
Score = 70.1 bits (170), Expect = 3e-10
Identities = 37/65 (56%), Positives = 46/65 (70%), Gaps = 3/65 (4%)
Frame = +3
Query: 66 AADLLGQFNMIGCKPCP-PITFGPRLSAHDGELLS--NSKEYRSVVGGLQYLTFTRPDIA 236
A DLL + NM CKP P++ +LSAH+G+LL ++ YRSVVG LQYLT TRPDIA
Sbjct: 587 ACDLLRRVNMFDCKPVSTPLSTSEKLSAHEGDLLGPLDATNYRSVVGALQYLTLTRPDIA 646
Query: 237 FAVNQ 251
F VN+
Sbjct: 647 FPVNK 651
>gb|AAU43956.1| unknown protein [Oryza sativa Japonica Group]
gi|52353503|gb|AAU44069.1| putative polyprotein [Oryza
sativa Japonica Group]
Length = 1447
Score = 70.1 bits (170), Expect = 3e-10
Identities = 37/65 (56%), Positives = 46/65 (70%), Gaps = 3/65 (4%)
Frame = +3
Query: 66 AADLLGQFNMIGCKPCP-PITFGPRLSAHDGELLS--NSKEYRSVVGGLQYLTFTRPDIA 236
A DLL + NM CKP P++ +LSAH+G+LL ++ YRSVVG LQYLT TRPDIA
Sbjct: 1188 ACDLLRRVNMFDCKPVSTPLSTSEKLSAHEGDLLGPLDATNYRSVVGALQYLTLTRPDIA 1247
Query: 237 FAVNQ 251
F VN+
Sbjct: 1248 FPVNK 1252
>emb|CAB46043.1| retrotransposon like protein [Arabidopsis thaliana]
gi|7268438|emb|CAB80958.1| retrotransposon like protein
[Arabidopsis thaliana]
Length = 1474
Score = 70.1 bits (170), Expect = 3e-10
Identities = 37/66 (56%), Positives = 46/66 (69%), Gaps = 1/66 (1%)
Frame = +3
Query: 57 KYIAADLLGQFNMIGCKPC-PPITFGPRLSAHDGELLSNSKEYRSVVGGLQYLTFTRPDI 233
KYI DLL + NM KP P+ P+L+ H G L+++ EYRSVVG LQYL FTRPDI
Sbjct: 1212 KYIK-DLLAKHNMADAKPVLTPLPTSPKLTLHGGTKLNDASEYRSVVGSLQYLAFTRPDI 1270
Query: 234 AFAVNQ 251
A+AVN+
Sbjct: 1271 AYAVNR 1276
>ref|XP_004295686.1| PREDICTED: uncharacterized mitochondrial protein AtMg00810-like
[Fragaria vesca subsp. vesca]
Length = 261
Score = 69.7 bits (169), Expect = 4e-10
Identities = 37/66 (56%), Positives = 45/66 (68%), Gaps = 1/66 (1%)
Frame = +3
Query: 57 KYIAADLLGQFNMIGCKPCP-PITFGPRLSAHDGELLSNSKEYRSVVGGLQYLTFTRPDI 233
KYI DLL + M+ PC P G +LS H G+ LS+ EYRSVVG LQYLT TRPDI
Sbjct: 31 KYIV-DLLTRTKMLDANPCATPAATGQKLSLHSGKKLSDPTEYRSVVGALQYLTLTRPDI 89
Query: 234 AFAVNQ 251
+++VNQ
Sbjct: 90 SYSVNQ 95
>ref|XP_006465491.1| PREDICTED: uncharacterized protein LOC102624640 [Citrus sinensis]
Length = 1682
Score = 68.9 bits (167), Expect = 6e-10
Identities = 38/84 (45%), Positives = 53/84 (63%), Gaps = 1/84 (1%)
Frame = +3
Query: 3 INQLCSGLYS*QLYF*IWKYIAADLLGQFNMIGCKPCP-PITFGPRLSAHDGELLSNSKE 179
+ + SG+Y Q KYIA D+L + NM C P P P+ G L+ G ++SNS +
Sbjct: 559 VTKTASGIYLSQS-----KYIA-DILAKHNMADCSPVPTPMATGHYLTKGSGSVISNSSQ 612
Query: 180 YRSVVGGLQYLTFTRPDIAFAVNQ 251
Y+S VG LQY+T TRP+IAF+VN+
Sbjct: 613 YKSAVGALQYVTLTRPEIAFSVNK 636
>gb|ABA98049.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1460
Score = 67.8 bits (164), Expect = 1e-09
Identities = 36/65 (55%), Positives = 45/65 (69%), Gaps = 3/65 (4%)
Frame = +3
Query: 66 AADLLGQFNMIGCKPC-PPITFGPRLSAHDGELLS--NSKEYRSVVGGLQYLTFTRPDIA 236
A DLL + MI CKP P++ +LS H+G LL ++ YRSVVG LQYLT TRPDIA
Sbjct: 1194 ANDLLKKVGMIDCKPANTPLSVSEKLSLHEGSLLGPEDASHYRSVVGALQYLTLTRPDIA 1253
Query: 237 FAVNQ 251
F+VN+
Sbjct: 1254 FSVNK 1258
>gb|AAX96193.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
Japonica Group]
Length = 1621
Score = 67.8 bits (164), Expect = 1e-09
Identities = 36/65 (55%), Positives = 45/65 (69%), Gaps = 3/65 (4%)
Frame = +3
Query: 66 AADLLGQFNMIGCKPC-PPITFGPRLSAHDGELLS--NSKEYRSVVGGLQYLTFTRPDIA 236
A DLL + MI CKP P++ +LS H+G LL ++ YRSVVG LQYLT TRPDIA
Sbjct: 916 ANDLLKKVGMIDCKPANTPLSVSEKLSLHEGSLLGPEDASHYRSVVGALQYLTLTRPDIA 975
Query: 237 FAVNQ 251
F+VN+
Sbjct: 976 FSVNK 980
>emb|CAN77432.1| hypothetical protein VITISV_017814 [Vitis vinifera]
Length = 356
Score = 67.8 bits (164), Expect = 1e-09
Identities = 40/87 (45%), Positives = 49/87 (56%), Gaps = 1/87 (1%)
Frame = +3
Query: 57 KYIAADLLGQFNMIGCKPCP-PITFGPRLSAHDGELLSNSKEYRSVVGGLQYLTFTRPDI 233
KYI DLL + M+ KPCP P++ S HDG L N YRS V LQY T RPDI
Sbjct: 213 KYII-DLLTRATMLDVKPCPTPMSSNTNFSLHDGVALENGSNYRSFVDALQYYTMIRPDI 271
Query: 234 AFAVNQRRSKQYLILAHRS*VSRFGLY 314
AFA+N+ + IL + S FGL+
Sbjct: 272 AFAINKAVKR---ILRYLKATSHFGLF 295
>gb|ABA98286.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1478
Score = 67.8 bits (164), Expect = 1e-09
Identities = 36/65 (55%), Positives = 45/65 (69%), Gaps = 3/65 (4%)
Frame = +3
Query: 66 AADLLGQFNMIGCKPC-PPITFGPRLSAHDGELLS--NSKEYRSVVGGLQYLTFTRPDIA 236
A DLL + MI CKP P++ +LS H+G LL ++ YRSVVG LQYLT TRPDIA
Sbjct: 1187 ANDLLKKVGMIDCKPANTPLSVSEKLSLHEGSLLGPEDASHYRSVVGALQYLTLTRPDIA 1246
Query: 237 FAVNQ 251
F+VN+
Sbjct: 1247 FSVNK 1251
>emb|CCH50966.1| T4.5 [Malus x robusta]
Length = 1670
Score = 67.4 bits (163), Expect = 2e-09
Identities = 35/62 (56%), Positives = 42/62 (67%)
Frame = +3
Query: 66 AADLLGQFNMIGCKPCPPITFGPRLSAHDGELLSNSKEYRSVVGGLQYLTFTRPDIAFAV 245
A DLL + +M+G KPC +L H G LLS+ YRS VG LQYLT+TRPD+AFAV
Sbjct: 1397 ALDLLKKTDMLGAKPCATPVSTSKLD-HSGTLLSDPTSYRSTVGALQYLTWTRPDLAFAV 1455
Query: 246 NQ 251
NQ
Sbjct: 1456 NQ 1457
>gb|ABA97652.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1145
Score = 66.2 bits (160), Expect = 4e-09
Identities = 33/65 (50%), Positives = 47/65 (72%), Gaps = 3/65 (4%)
Frame = +3
Query: 66 AADLLGQFNMIGCKPCP-PITFGPRLSAHDGELL--SNSKEYRSVVGGLQYLTFTRPDIA 236
A DLL + M+ CKP P++ +LS H+G LL +++ ++RS+VG LQYLT TRPDIA
Sbjct: 1004 ATDLLKKVGMMNCKPVTTPMSVSEKLSVHEGSLLGPNDATQFRSIVGALQYLTLTRPDIA 1063
Query: 237 FAVNQ 251
F+VN+
Sbjct: 1064 FSVNK 1068
>ref|XP_002444329.1| hypothetical protein SORBIDRAFT_07g020255 [Sorghum bicolor]
gi|241940679|gb|EES13824.1| hypothetical protein
SORBIDRAFT_07g020255 [Sorghum bicolor]
Length = 987
Score = 66.2 bits (160), Expect = 4e-09
Identities = 31/61 (50%), Positives = 42/61 (68%), Gaps = 1/61 (1%)
Frame = +3
Query: 72 DLLGQFNMIGCKPCP-PITFGPRLSAHDGELLSNSKEYRSVVGGLQYLTFTRPDIAFAVN 248
D+L + M GCKPCP P+ +LS +G L+++ YR++ G LQYLTFTRPDI +AV
Sbjct: 732 DILERAGMTGCKPCPTPVDTQGKLSEAEGSLVADPTAYRNLAGALQYLTFTRPDITYAVQ 791
Query: 249 Q 251
Q
Sbjct: 792 Q 792
>emb|CAN75149.1| hypothetical protein VITISV_027193 [Vitis vinifera]
Length = 587
Score = 66.2 bits (160), Expect = 4e-09
Identities = 36/66 (54%), Positives = 44/66 (66%), Gaps = 1/66 (1%)
Frame = +3
Query: 57 KYIAADLLGQFNMIGCKPCP-PITFGPRLSAHDGELLSNSKEYRSVVGGLQYLTFTRPDI 233
KYI DLL + M KP P P + GP LS DG L + +YR +VG LQY+TFTRPDI
Sbjct: 475 KYIT-DLLHRTQMEAAKPTPTPYSLGPTLSQSDGVPLPDPSKYRRIVGALQYVTFTRPDI 533
Query: 234 AFAVNQ 251
AF+VN+
Sbjct: 534 AFSVNK 539
>gb|ABG22122.1| polyprotein [Prunus avium]
Length = 263
Score = 66.2 bits (160), Expect = 4e-09
Identities = 32/60 (53%), Positives = 40/60 (66%)
Frame = +3
Query: 72 DLLGQFNMIGCKPCPPITFGPRLSAHDGELLSNSKEYRSVVGGLQYLTFTRPDIAFAVNQ 251
DLL + +M+ CKPC +L G LL + YRS+VG LQY+T+TRPDIAFAVNQ
Sbjct: 59 DLLTRASMVACKPCSSPASPTKLDTESGMLLPDPTLYRSLVGALQYITWTRPDIAFAVNQ 118
>gb|AAD17352.1| contains similarity to retrovirus-related polyproteins [Arabidopsis
thaliana] gi|7267379|emb|CAB77940.1| putative polyprotein
[Arabidopsis thaliana]
Length = 1366
Score = 65.9 bits (159), Expect = 5e-09
Identities = 32/63 (50%), Positives = 42/63 (66%), Gaps = 1/63 (1%)
Frame = +3
Query: 66 AADLLGQFNMIGCKPCP-PITFGPRLSAHDGELLSNSKEYRSVVGGLQYLTFTRPDIAFA 242
A +LL +F +GCKP P P+ +LS DG LL ++ YR ++G L YLT TRPDI FA
Sbjct: 1142 ALELLEEFGFLGCKPVPTPMELNLKLSQEDGALLLDASHYRKLIGRLVYLTVTRPDICFA 1201
Query: 243 VNQ 251
VN+
Sbjct: 1202 VNK 1204