BLASTX nr result
ID: Catharanthus23_contig00039650
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Catharanthus23_contig00039650
(303 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T02087 gag/pol polyprotein - maize retrotransposon Hopscotc... 134 1e-29
gb|AAU90262.1| integrase core domain containing protein [Oryza s... 132 5e-29
gb|ABA98728.2| retrotransposon protein, putative, Ty1-copia subc... 131 8e-29
gb|AAB82754.1| retrofit [Oryza longistaminata] 128 7e-28
gb|AAP94600.1| putative copia-like retrotransposon Hopscotch pol... 127 2e-27
gb|AAL66754.1|AF464738_5 putative copia-like retrotransposon Hop... 127 2e-27
gb|ACY72569.1| unknown [Oryza sativa Japonica Group] 126 3e-27
gb|AAT07563.1| putative polyprotein [Oryza sativa Japonica Group... 126 3e-27
gb|ABA97652.1| retrotransposon protein, putative, Ty1-copia subc... 125 8e-27
gb|AAU10682.1| putative polyprotein [Oryza sativa Japonica Group] 124 1e-26
gb|ABA97278.2| retrotransposon protein, putative, Ty1-copia subc... 124 2e-26
gb|ABA98049.1| retrotransposon protein, putative, Ty1-copia subc... 123 3e-26
gb|ABA98286.2| retrotransposon protein, putative, Ty1-copia subc... 123 3e-26
gb|ABA95721.1| retrotransposon protein, putative, Ty1-copia subc... 122 4e-26
gb|AAX96308.1| retrotransposon protein, putative, Ty1-copia sub-... 122 4e-26
gb|ABF99203.1| retrotransposon protein, putative, Ty1-copia subc... 122 5e-26
gb|AAK09230.1|AC084320_17 putative copia-like retrotransposon Ho... 122 5e-26
gb|ABA95367.1| retrotransposon protein, putative, Ty1-copia subc... 122 6e-26
ref|XP_004967136.1| PREDICTED: uncharacterized protein LOC101762... 119 3e-25
gb|AAU43956.1| unknown protein [Oryza sativa Japonica Group] gi|... 119 5e-25
>pir||T02087 gag/pol polyprotein - maize retrotransposon Hopscotch
gi|531389|gb|AAA57005.1| copia-like retrotransposon
Hopscotch polyprotein [Zea mays]
Length = 1439
Score = 134 bits (337), Expect = 1e-29
Identities = 61/94 (64%), Positives = 74/94 (78%)
Frame = +2
Query: 2 KLLGKKPDYSLPKTFGCACYPNLRPYNQYKLQFRSKQCVFIGCSNMHKGYKCLDVHTGRV 181
KL G PDYS + FGCAC+PNLRPYNQ+KLQFRS +CVF+G SNMHKG+KCLD+ TGR+
Sbjct: 668 KLTGATPDYSSLRIFGCACWPNLRPYNQHKLQFRSTRCVFLGYSNMHKGFKCLDISTGRI 727
Query: 182 YISRDVFFYEKLFPFCTKSSSSGYVRTVEQLLLP 283
YISRDV F E +FPF + + ++G T E LLLP
Sbjct: 728 YISRDVVFDEHVFPFASLNKNAGVKYTSEVLLLP 761
>gb|AAU90262.1| integrase core domain containing protein [Oryza sativa Japonica
Group] gi|108710062|gb|ABF97857.1| retrotransposon
protein, putative, Ty1-copia subclass, expressed [Oryza
sativa Japonica Group]
Length = 1021
Score = 132 bits (332), Expect = 5e-29
Identities = 63/94 (67%), Positives = 74/94 (78%)
Frame = +2
Query: 2 KLLGKKPDYSLPKTFGCACYPNLRPYNQYKLQFRSKQCVFIGCSNMHKGYKCLDVHTGRV 181
+LL +KP+YS +TFGCAC+PNLRPYN KLQFRSKQCVF+G SN+HKG+KCLDV TGRV
Sbjct: 583 RLLNQKPNYSSLRTFGCACWPNLRPYNNRKLQFRSKQCVFLGYSNIHKGFKCLDVATGRV 642
Query: 182 YISRDVFFYEKLFPFCTKSSSSGYVRTVEQLLLP 283
YISRDV F E +FPF S++G E LLLP
Sbjct: 643 YISRDVVFDENIFPFSQLHSNAGARLRSEILLLP 676
>gb|ABA98728.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1016
Score = 131 bits (330), Expect = 8e-29
Identities = 62/94 (65%), Positives = 75/94 (79%)
Frame = +2
Query: 2 KLLGKKPDYSLPKTFGCACYPNLRPYNQYKLQFRSKQCVFIGCSNMHKGYKCLDVHTGRV 181
+LL +KP+YS +TFGCAC+PNLRPYN+ KL+FRSKQCVF+G SN+HKG+KCLDV TGRV
Sbjct: 279 RLLDQKPNYSALRTFGCACWPNLRPYNKRKLEFRSKQCVFLGYSNIHKGFKCLDVSTGRV 338
Query: 182 YISRDVFFYEKLFPFCTKSSSSGYVRTVEQLLLP 283
YISRDV F E +FPF S++G E LLLP
Sbjct: 339 YISRDVVFDENVFPFSKLHSNAGARLRSEILLLP 372
>gb|AAB82754.1| retrofit [Oryza longistaminata]
Length = 1445
Score = 128 bits (322), Expect = 7e-28
Identities = 61/94 (64%), Positives = 72/94 (76%)
Frame = +2
Query: 2 KLLGKKPDYSLPKTFGCACYPNLRPYNQYKLQFRSKQCVFIGCSNMHKGYKCLDVHTGRV 181
KL +KPDYS + FGCAC+P+LRPYN +KLQFRSKQCVF+G S HKG+KCLDV +GRV
Sbjct: 668 KLFNQKPDYSSLRVFGCACWPHLRPYNTHKLQFRSKQCVFLGFSTHHKGFKCLDVSSGRV 727
Query: 182 YISRDVFFYEKLFPFCTKSSSSGYVRTVEQLLLP 283
YISRDV F E +FPF T S++G E LLLP
Sbjct: 728 YISRDVVFDENVFPFSTLHSNAGARLRSEILLLP 761
>gb|AAP94600.1| putative copia-like retrotransposon Hopscotch polyprotein [Zea
mays]
Length = 969
Score = 127 bits (319), Expect = 2e-27
Identities = 59/95 (62%), Positives = 75/95 (78%), Gaps = 1/95 (1%)
Frame = +2
Query: 2 KLLGKKPDYSLPKTFGCACYPNLRPYNQYKLQFRSKQCVFIGCSNMHKGYKCLDVHTGRV 181
+L K+PDYS+ + FGC C+PNLRPYN +KLQFRSKQCVF+G S++HKG+KCLDV TGRV
Sbjct: 515 RLFHKQPDYSVLRIFGCVCWPNLRPYNSHKLQFRSKQCVFLGYSSLHKGFKCLDVSTGRV 574
Query: 182 YISRDVFFYEKLFPFCTKSSSSG-YVRTVEQLLLP 283
Y+SRDV F E FPF + S++G +R+ QLL P
Sbjct: 575 YVSRDVTFDENFFPFASLHSNAGARLRSEIQLLSP 609
>gb|AAL66754.1|AF464738_5 putative copia-like retrotransposon Hopscotch polyprotein [Zea
mays]
Length = 1313
Score = 127 bits (319), Expect = 2e-27
Identities = 59/95 (62%), Positives = 75/95 (78%), Gaps = 1/95 (1%)
Frame = +2
Query: 2 KLLGKKPDYSLPKTFGCACYPNLRPYNQYKLQFRSKQCVFIGCSNMHKGYKCLDVHTGRV 181
+L K+PDYS+ + FGC C+PNLRPYN +KLQFRSKQCVF+G S++HKG+KCLDV TGRV
Sbjct: 515 RLFHKQPDYSVLRIFGCVCWPNLRPYNSHKLQFRSKQCVFLGYSSLHKGFKCLDVSTGRV 574
Query: 182 YISRDVFFYEKLFPFCTKSSSSG-YVRTVEQLLLP 283
Y+SRDV F E FPF + S++G +R+ QLL P
Sbjct: 575 YVSRDVTFDENFFPFASLHSNAGARLRSEIQLLSP 609
>gb|ACY72569.1| unknown [Oryza sativa Japonica Group]
Length = 1436
Score = 126 bits (317), Expect = 3e-27
Identities = 60/94 (63%), Positives = 71/94 (75%)
Frame = +2
Query: 2 KLLGKKPDYSLPKTFGCACYPNLRPYNQYKLQFRSKQCVFIGCSNMHKGYKCLDVHTGRV 181
KL +KPDY + FGCAC+P+LRPYN +KLQFRSKQCVF+G S HKG+KCLDV +GRV
Sbjct: 668 KLFNQKPDYLSLRVFGCACWPHLRPYNTHKLQFRSKQCVFLGFSTHHKGFKCLDVSSGRV 727
Query: 182 YISRDVFFYEKLFPFCTKSSSSGYVRTVEQLLLP 283
YISRDV F E +FPF T S++G E LLLP
Sbjct: 728 YISRDVVFDENIFPFSTLHSNAGARLRSEILLLP 761
>gb|AAT07563.1| putative polyprotein [Oryza sativa Japonica Group]
gi|46981313|gb|AAT07631.1| putative polyprotein [Oryza
sativa Japonica Group]
Length = 1431
Score = 126 bits (316), Expect = 3e-27
Identities = 58/94 (61%), Positives = 71/94 (75%)
Frame = +2
Query: 2 KLLGKKPDYSLPKTFGCACYPNLRPYNQYKLQFRSKQCVFIGCSNMHKGYKCLDVHTGRV 181
+L + PDY +TFGCAC+PNLRPYN +KLQFRSKQCVF+G SN+HKG+KCLDV TGRV
Sbjct: 655 RLFKQTPDYKSLRTFGCACWPNLRPYNTHKLQFRSKQCVFLGFSNIHKGFKCLDVSTGRV 714
Query: 182 YISRDVFFYEKLFPFCTKSSSSGYVRTVEQLLLP 283
Y+SRDV F E++FPF ++G E LLP
Sbjct: 715 YVSRDVTFDEQVFPFANLHPNAGARLRAEISLLP 748
>gb|ABA97652.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1145
Score = 125 bits (313), Expect = 8e-27
Identities = 57/93 (61%), Positives = 71/93 (76%)
Frame = +2
Query: 2 KLLGKKPDYSLPKTFGCACYPNLRPYNQYKLQFRSKQCVFIGCSNMHKGYKCLDVHTGRV 181
K +KPDYS + FGCAC+PNLRPYN++KLQFRSK+C F+G SNMHKG+KCLD+ +GRV
Sbjct: 538 KFFHQKPDYSSLRVFGCACWPNLRPYNKHKLQFRSKRCAFLGFSNMHKGFKCLDISSGRV 597
Query: 182 YISRDVFFYEKLFPFCTKSSSSGYVRTVEQLLL 280
YISRDV F E +FPF +++G E LLL
Sbjct: 598 YISRDVVFDENIFPFSELHANAGARLRSELLLL 630
>gb|AAU10682.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1210
Score = 124 bits (312), Expect = 1e-26
Identities = 59/93 (63%), Positives = 70/93 (75%)
Frame = +2
Query: 5 LLGKKPDYSLPKTFGCACYPNLRPYNQYKLQFRSKQCVFIGCSNMHKGYKCLDVHTGRVY 184
L +KP Y+ + FGCAC+PNLRPYN KLQFRSKQCVF+G SN+HKG+KCLDV GRVY
Sbjct: 660 LFHQKPSYTSLRVFGCACWPNLRPYNARKLQFRSKQCVFLGYSNLHKGFKCLDVAAGRVY 719
Query: 185 ISRDVFFYEKLFPFCTKSSSSGYVRTVEQLLLP 283
ISRDV F E +FPF + S++G E LLLP
Sbjct: 720 ISRDVVFDENVFPFASLHSNAGARLRSEILLLP 752
>gb|ABA97278.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 642
Score = 124 bits (310), Expect = 2e-26
Identities = 58/94 (61%), Positives = 71/94 (75%)
Frame = +2
Query: 2 KLLGKKPDYSLPKTFGCACYPNLRPYNQYKLQFRSKQCVFIGCSNMHKGYKCLDVHTGRV 181
KL +KPDYS + FGCAC+PNL PYN++KL+FRSK CVF+G SNMHKG+KCL+V TGRV
Sbjct: 33 KLYHQKPDYSSLRVFGCACWPNLIPYNKHKLEFRSKHCVFLGFSNMHKGFKCLEVSTGRV 92
Query: 182 YISRDVFFYEKLFPFCTKSSSSGYVRTVEQLLLP 283
YISRDV F E +FPF +++G E LLP
Sbjct: 93 YISRDVVFDETIFPFSEPHANAGARLRAEINLLP 126
>gb|ABA98049.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1460
Score = 123 bits (308), Expect = 3e-26
Identities = 54/83 (65%), Positives = 67/83 (80%)
Frame = +2
Query: 2 KLLGKKPDYSLPKTFGCACYPNLRPYNQYKLQFRSKQCVFIGCSNMHKGYKCLDVHTGRV 181
KL +KPDYS + FGCAC+PNLRPYN +KLQFRSK+CVF+G S MHKG+KCL+V TGR+
Sbjct: 662 KLFKQKPDYSSLRIFGCACWPNLRPYNNHKLQFRSKRCVFLGFSTMHKGFKCLEVSTGRI 721
Query: 182 YISRDVFFYEKLFPFCTKSSSSG 250
YISRDV F E +FPF +++G
Sbjct: 722 YISRDVVFDENIFPFTELHANAG 744
>gb|ABA98286.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1478
Score = 123 bits (308), Expect = 3e-26
Identities = 54/83 (65%), Positives = 67/83 (80%)
Frame = +2
Query: 2 KLLGKKPDYSLPKTFGCACYPNLRPYNQYKLQFRSKQCVFIGCSNMHKGYKCLDVHTGRV 181
KL +KPDYS + FGCAC+PNLRPYN +KLQFRSK+CVF+G S MHKG+KCL+V TGR+
Sbjct: 695 KLFKQKPDYSSLRIFGCACWPNLRPYNNHKLQFRSKRCVFLGFSTMHKGFKCLEVSTGRI 754
Query: 182 YISRDVFFYEKLFPFCTKSSSSG 250
YISRDV F E +FPF +++G
Sbjct: 755 YISRDVVFDENIFPFTELHANAG 777
>gb|ABA95721.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 900
Score = 122 bits (307), Expect = 4e-26
Identities = 56/93 (60%), Positives = 71/93 (76%)
Frame = +2
Query: 5 LLGKKPDYSLPKTFGCACYPNLRPYNQYKLQFRSKQCVFIGCSNMHKGYKCLDVHTGRVY 184
L ++PDY+ +TFGCAC+PNLRPYN +KL FRSKQCVF+G S +HKG+KCL+V++GRVY
Sbjct: 101 LFEEQPDYNALRTFGCACWPNLRPYNTHKLAFRSKQCVFLGYSPLHKGFKCLEVNSGRVY 160
Query: 185 ISRDVFFYEKLFPFCTKSSSSGYVRTVEQLLLP 283
ISRDV F E +FPF ++G E LLLP
Sbjct: 161 ISRDVVFDENIFPFAQLRPNAGARLRAEVLLLP 193
>gb|AAX96308.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
sativa Japonica Group] gi|77548933|gb|ABA91730.1|
retrotransposon protein, putative, Ty1-copia subclass
[Oryza sativa Japonica Group]
Length = 1094
Score = 122 bits (307), Expect = 4e-26
Identities = 58/94 (61%), Positives = 71/94 (75%)
Frame = +2
Query: 2 KLLGKKPDYSLPKTFGCACYPNLRPYNQYKLQFRSKQCVFIGCSNMHKGYKCLDVHTGRV 181
KL +KPDY+ + GCAC+PNLRPYN +KLQFRSK+CVF+G SNMHKG+KCL+V TGRV
Sbjct: 349 KLHHQKPDYTSLRVLGCACWPNLRPYNNHKLQFRSKRCVFLGFSNMHKGFKCLEVSTGRV 408
Query: 182 YISRDVFFYEKLFPFCTKSSSSGYVRTVEQLLLP 283
YISRDV F E +FPF +++G E LLP
Sbjct: 409 YISRDVVFDETIFPFSELHANAGARLRSEIELLP 442
>gb|ABF99203.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1177
Score = 122 bits (306), Expect = 5e-26
Identities = 57/94 (60%), Positives = 71/94 (75%)
Frame = +2
Query: 2 KLLGKKPDYSLPKTFGCACYPNLRPYNQYKLQFRSKQCVFIGCSNMHKGYKCLDVHTGRV 181
+L ++PDY +TFGCAC+PNLRPYN +KLQFRSKQCVF+G SN+HKG+KCL+V TG+V
Sbjct: 545 RLFHQQPDYKSLRTFGCACWPNLRPYNTHKLQFRSKQCVFLGFSNLHKGFKCLEVATGQV 604
Query: 182 YISRDVFFYEKLFPFCTKSSSSGYVRTVEQLLLP 283
YISRDV F E+ FPF ++G E LLP
Sbjct: 605 YISRDVTFDEQEFPFSKLQPNAGARLRAEISLLP 638
>gb|AAK09230.1|AC084320_17 putative copia-like retrotransposon Hopscotch polyprotein [Oryza
sativa Japonica Group]
gi|14718304|gb|AAK72882.1|AC091123_1 putative gag-pol
protein [Oryza sativa Japonica Group]
Length = 1219
Score = 122 bits (306), Expect = 5e-26
Identities = 57/94 (60%), Positives = 71/94 (75%)
Frame = +2
Query: 2 KLLGKKPDYSLPKTFGCACYPNLRPYNQYKLQFRSKQCVFIGCSNMHKGYKCLDVHTGRV 181
+L ++PDY +TFGCAC+PNLRPYN +KLQFRSKQCVF+G SN+HKG+KCL+V TG+V
Sbjct: 656 RLFHQQPDYKSLRTFGCACWPNLRPYNTHKLQFRSKQCVFLGFSNLHKGFKCLEVATGQV 715
Query: 182 YISRDVFFYEKLFPFCTKSSSSGYVRTVEQLLLP 283
YISRDV F E+ FPF ++G E LLP
Sbjct: 716 YISRDVTFDEQEFPFSKLQPNAGARLRAEISLLP 749
>gb|ABA95367.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 807
Score = 122 bits (305), Expect = 6e-26
Identities = 58/94 (61%), Positives = 70/94 (74%)
Frame = +2
Query: 2 KLLGKKPDYSLPKTFGCACYPNLRPYNQYKLQFRSKQCVFIGCSNMHKGYKCLDVHTGRV 181
+L + P+YSL + FGCAC+PNLRPYN +KLQFRSKQCVF+ S++HKG+KCLDV TGRV
Sbjct: 631 RLFKQLPNYSLLRVFGCACWPNLRPYNNHKLQFRSKQCVFLDYSHLHKGFKCLDVSTGRV 690
Query: 182 YISRDVFFYEKLFPFCTKSSSSGYVRTVEQLLLP 283
YISRDV F E +F F T +SG E LLP
Sbjct: 691 YISRDVIFDENVFSFSTLHENSGARLRSEISLLP 724
>ref|XP_004967136.1| PREDICTED: uncharacterized protein LOC101762311 [Setaria italica]
Length = 866
Score = 119 bits (299), Expect = 3e-25
Identities = 56/98 (57%), Positives = 68/98 (69%)
Frame = +2
Query: 2 KLLGKKPDYSLPKTFGCACYPNLRPYNQYKLQFRSKQCVFIGCSNMHKGYKCLDVHTGRV 181
+L G DYS + FGCAC+PNLRPYN +KL FRS QC FIG S+MHKG+KCLD+ TGR+
Sbjct: 580 RLFGDTSDYSNLRVFGCACWPNLRPYNSHKLSFRSTQCAFIGYSSMHKGFKCLDISTGRI 639
Query: 182 YISRDVFFYEKLFPFCTKSSSSGYVRTVEQLLLPIQNR 295
YISRDV F E +FPF +G + E +LLP R
Sbjct: 640 YISRDVVFDEAVFPFSKLHPHAGALLRKEIVLLPASLR 677
>gb|AAU43956.1| unknown protein [Oryza sativa Japonica Group]
gi|52353503|gb|AAU44069.1| putative polyprotein [Oryza
sativa Japonica Group]
Length = 1447
Score = 119 bits (297), Expect = 5e-25
Identities = 56/93 (60%), Positives = 67/93 (72%)
Frame = +2
Query: 5 LLGKKPDYSLPKTFGCACYPNLRPYNQYKLQFRSKQCVFIGCSNMHKGYKCLDVHTGRVY 184
L + PDYS + FGCAC+P+LRPYN +KLQFRSKQC F+G S +HKG+KCLD TGRVY
Sbjct: 669 LFNQTPDYSSLRVFGCACWPHLRPYNTHKLQFRSKQCTFLGYSTLHKGFKCLDPSTGRVY 728
Query: 185 ISRDVFFYEKLFPFCTKSSSSGYVRTVEQLLLP 283
ISRDV F E FPF +++G E LLLP
Sbjct: 729 ISRDVIFDETNFPFAKLHTNAGARLRSEILLLP 761