BLASTX nr result
ID: Catharanthus23_contig00037976
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Catharanthus23_contig00037976
(217 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002516925.1| pentatricopeptide repeat-containing protein,... 113 2e-23
gb|EOY06521.1| Pentatricopeptide repeat-containing protein, puta... 110 3e-22
ref|XP_003631958.1| PREDICTED: pentatricopeptide repeat-containi... 109 4e-22
emb|CBI26055.3| unnamed protein product [Vitis vinifera] 109 4e-22
ref|XP_006356988.1| PREDICTED: pentatricopeptide repeat-containi... 108 7e-22
ref|XP_002314384.2| hypothetical protein POPTR_0010s01780g [Popu... 108 7e-22
ref|XP_004229569.1| PREDICTED: pentatricopeptide repeat-containi... 105 5e-21
ref|XP_002882500.1| pentatricopeptide repeat-containing protein ... 105 6e-21
ref|XP_006296956.1| hypothetical protein CARUB_v10012947mg [Caps... 105 8e-21
ref|XP_004491497.1| PREDICTED: pentatricopeptide repeat-containi... 104 1e-20
ref|NP_187348.1| pentatricopeptide repeat-containing protein [Ar... 104 1e-20
ref|XP_003617758.1| Pentatricopeptide repeat-containing protein ... 103 2e-20
ref|XP_004296842.1| PREDICTED: pentatricopeptide repeat-containi... 102 7e-20
gb|EXB74774.1| hypothetical protein L484_023516 [Morus notabilis] 100 2e-19
gb|ESW14398.1| hypothetical protein PHAVU_008G277600g, partial [... 100 2e-19
ref|XP_002862796.1| hypothetical protein ARALYDRAFT_359368 [Arab... 99 4e-19
ref|XP_006407890.1| hypothetical protein EUTSA_v10020026mg [Eutr... 99 8e-19
ref|XP_006658440.1| PREDICTED: pentatricopeptide repeat-containi... 96 4e-18
ref|XP_004164304.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope... 96 4e-18
ref|XP_004134213.1| PREDICTED: pentatricopeptide repeat-containi... 96 4e-18
>ref|XP_002516925.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223544013|gb|EEF45539.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 901
Score = 113 bits (283), Expect = 2e-23
Identities = 53/71 (74%), Positives = 59/71 (83%)
Frame = -3
Query: 215 QMELERTVPCAHTYAIMIMGYGSAGRIDEAYRLLERQKLKGSMPSVIAYNCLLTCIGKHG 36
QME R VPCA+ Y MIMGYGSAG+ DEAY LLERQK +G +PSVIAYNC+LTC+GK G
Sbjct: 328 QMEQNRNVPCAYAYNTMIMGYGSAGKFDEAYSLLERQKARGCIPSVIAYNCILTCLGKKG 387
Query: 35 RLDEALRTFEE 3
RL EALRTFEE
Sbjct: 388 RLGEALRTFEE 398
Score = 55.5 bits (132), Expect = 7e-06
Identities = 25/60 (41%), Positives = 37/60 (61%)
Frame = -3
Query: 182 HTYAIMIMGYGSAGRIDEAYRLLERQKLKGSMPSVIAYNCLLTCIGKHGRLDEALRTFEE 3
H Y I G+ +G++++AY+LLE K KG P+V+ Y ++ + K RLDEA FEE
Sbjct: 618 HAYNTFIDGFCKSGKVNKAYQLLEEMKTKGRQPTVVTYGSVIDGLAKIDRLDEAYMLFEE 677
>gb|EOY06521.1| Pentatricopeptide repeat-containing protein, putative [Theobroma
cacao]
Length = 901
Score = 110 bits (274), Expect = 3e-22
Identities = 52/71 (73%), Positives = 59/71 (83%)
Frame = -3
Query: 215 QMELERTVPCAHTYAIMIMGYGSAGRIDEAYRLLERQKLKGSMPSVIAYNCLLTCIGKHG 36
QME R VPCA+ Y MIMGYGSAG+ DEAY LLERQK KGS+PSVIAYNC+LTC+GK G
Sbjct: 328 QMEQNRKVPCAYAYNTMIMGYGSAGKFDEAYSLLERQKEKGSIPSVIAYNCILTCLGKKG 387
Query: 35 RLDEALRTFEE 3
++ EALR FEE
Sbjct: 388 KVVEALRIFEE 398
>ref|XP_003631958.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g06920-like [Vitis vinifera]
Length = 898
Score = 109 bits (272), Expect = 4e-22
Identities = 51/71 (71%), Positives = 59/71 (83%)
Frame = -3
Query: 215 QMELERTVPCAHTYAIMIMGYGSAGRIDEAYRLLERQKLKGSMPSVIAYNCLLTCIGKHG 36
Q+E R VPCA+ Y MIMGYGSAG+ DEAY LLERQK KGS+PSVIAYNC+LTC+GK
Sbjct: 325 QLEQNRKVPCAYAYNTMIMGYGSAGKFDEAYGLLERQKAKGSIPSVIAYNCILTCLGKKR 384
Query: 35 RLDEALRTFEE 3
R++EALR FEE
Sbjct: 385 RVEEALRIFEE 395
Score = 55.8 bits (133), Expect = 6e-06
Identities = 25/60 (41%), Positives = 39/60 (65%)
Frame = -3
Query: 182 HTYAIMIMGYGSAGRIDEAYRLLERQKLKGSMPSVIAYNCLLTCIGKHGRLDEALRTFEE 3
H Y +I G+ +G++++AY+LLE K+KG P+V+ Y ++ + K RLDEA FEE
Sbjct: 615 HAYNAVIDGFCKSGKVNKAYQLLEEMKVKGHPPTVVTYGSVIDGLAKIDRLDEAYMLFEE 674
>emb|CBI26055.3| unnamed protein product [Vitis vinifera]
Length = 653
Score = 109 bits (272), Expect = 4e-22
Identities = 51/71 (71%), Positives = 59/71 (83%)
Frame = -3
Query: 215 QMELERTVPCAHTYAIMIMGYGSAGRIDEAYRLLERQKLKGSMPSVIAYNCLLTCIGKHG 36
Q+E R VPCA+ Y MIMGYGSAG+ DEAY LLERQK KGS+PSVIAYNC+LTC+GK
Sbjct: 80 QLEQNRKVPCAYAYNTMIMGYGSAGKFDEAYGLLERQKAKGSIPSVIAYNCILTCLGKKR 139
Query: 35 RLDEALRTFEE 3
R++EALR FEE
Sbjct: 140 RVEEALRIFEE 150
Score = 55.8 bits (133), Expect = 6e-06
Identities = 25/60 (41%), Positives = 39/60 (65%)
Frame = -3
Query: 182 HTYAIMIMGYGSAGRIDEAYRLLERQKLKGSMPSVIAYNCLLTCIGKHGRLDEALRTFEE 3
H Y +I G+ +G++++AY+LLE K+KG P+V+ Y ++ + K RLDEA FEE
Sbjct: 370 HAYNAVIDGFCKSGKVNKAYQLLEEMKVKGHPPTVVTYGSVIDGLAKIDRLDEAYMLFEE 429
>ref|XP_006356988.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g06920-like isoform X1 [Solanum tuberosum]
gi|565381249|ref|XP_006356989.1| PREDICTED:
pentatricopeptide repeat-containing protein
At3g06920-like isoform X2 [Solanum tuberosum]
Length = 920
Score = 108 bits (270), Expect = 7e-22
Identities = 51/71 (71%), Positives = 59/71 (83%)
Frame = -3
Query: 215 QMELERTVPCAHTYAIMIMGYGSAGRIDEAYRLLERQKLKGSMPSVIAYNCLLTCIGKHG 36
Q+E RTVPCA+ Y MIMGYGSAG+ DEAY LLERQ+ KGS+PSVIAYN LLTC+GK
Sbjct: 347 QLEFNRTVPCAYAYNTMIMGYGSAGKFDEAYSLLERQRQKGSIPSVIAYNSLLTCLGKKQ 406
Query: 35 RLDEALRTFEE 3
R+DEALR F+E
Sbjct: 407 RVDEALRIFQE 417
>ref|XP_002314384.2| hypothetical protein POPTR_0010s01780g [Populus trichocarpa]
gi|550328882|gb|EEF00555.2| hypothetical protein
POPTR_0010s01780g [Populus trichocarpa]
Length = 898
Score = 108 bits (270), Expect = 7e-22
Identities = 49/71 (69%), Positives = 58/71 (81%)
Frame = -3
Query: 215 QMELERTVPCAHTYAIMIMGYGSAGRIDEAYRLLERQKLKGSMPSVIAYNCLLTCIGKHG 36
QME R VPCA+ Y MIMGYGSAG+ DEAY LLERQ+ KG +PSV+AYNC+LTC+GK G
Sbjct: 325 QMEQNRQVPCAYAYNTMIMGYGSAGKFDEAYSLLERQRAKGCIPSVVAYNCILTCLGKKG 384
Query: 35 RLDEALRTFEE 3
+ D+ALR FEE
Sbjct: 385 KTDKALRIFEE 395
>ref|XP_004229569.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g06920-like [Solanum lycopersicum]
Length = 920
Score = 105 bits (263), Expect = 5e-21
Identities = 49/71 (69%), Positives = 59/71 (83%)
Frame = -3
Query: 215 QMELERTVPCAHTYAIMIMGYGSAGRIDEAYRLLERQKLKGSMPSVIAYNCLLTCIGKHG 36
Q+E RTVPCA+ Y MIMGYGSAG+ DEAY LLERQ+ KGS+PSVIAYN LLTC+GK
Sbjct: 347 QLEFNRTVPCAYAYNTMIMGYGSAGKFDEAYSLLERQRQKGSIPSVIAYNSLLTCLGKKQ 406
Query: 35 RLDEALRTFEE 3
R++EALR F++
Sbjct: 407 RVEEALRIFQD 417
>ref|XP_002882500.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata] gi|297328340|gb|EFH58759.1|
pentatricopeptide repeat-containing protein [Arabidopsis
lyrata subsp. lyrata]
Length = 871
Score = 105 bits (262), Expect = 6e-21
Identities = 48/70 (68%), Positives = 57/70 (81%)
Frame = -3
Query: 212 MELERTVPCAHTYAIMIMGYGSAGRIDEAYRLLERQKLKGSMPSVIAYNCLLTCIGKHGR 33
+E R VPC + Y MIMGYGSAG+ DEAY LLERQ+ KGS+PSVIAYNC+LTC+ K G+
Sbjct: 299 LEKNRRVPCTYAYNTMIMGYGSAGKFDEAYSLLERQRAKGSIPSVIAYNCILTCLRKMGK 358
Query: 32 LDEALRTFEE 3
+DEALR FEE
Sbjct: 359 VDEALRVFEE 368
>ref|XP_006296956.1| hypothetical protein CARUB_v10012947mg [Capsella rubella]
gi|482565665|gb|EOA29854.1| hypothetical protein
CARUB_v10012947mg [Capsella rubella]
Length = 885
Score = 105 bits (261), Expect = 8e-21
Identities = 48/70 (68%), Positives = 57/70 (81%)
Frame = -3
Query: 212 MELERTVPCAHTYAIMIMGYGSAGRIDEAYRLLERQKLKGSMPSVIAYNCLLTCIGKHGR 33
+E R VPC + Y MIMGYGSAG+ DEAY LLERQ+ KGS+PSVIAYNC+LTC+ K G+
Sbjct: 313 LEKNRRVPCTYAYNTMIMGYGSAGKFDEAYSLLERQRAKGSIPSVIAYNCILTCLRKMGK 372
Query: 32 LDEALRTFEE 3
+DEALR FEE
Sbjct: 373 VDEALRMFEE 382
>ref|XP_004491497.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g06920-like isoform X1 [Cicer arietinum]
gi|502099516|ref|XP_004491498.1| PREDICTED:
pentatricopeptide repeat-containing protein
At3g06920-like isoform X2 [Cicer arietinum]
Length = 905
Score = 104 bits (259), Expect = 1e-20
Identities = 46/71 (64%), Positives = 58/71 (81%)
Frame = -3
Query: 215 QMELERTVPCAHTYAIMIMGYGSAGRIDEAYRLLERQKLKGSMPSVIAYNCLLTCIGKHG 36
+++ R+VPC + Y MIMGYGSAG+ DEAY LLERQK KG +PSVIAYNC+LTC+G+ G
Sbjct: 332 ELDFNRSVPCVYAYNTMIMGYGSAGKFDEAYSLLERQKRKGCIPSVIAYNCILTCLGRKG 391
Query: 35 RLDEALRTFEE 3
+L+EALR EE
Sbjct: 392 KLEEALRIHEE 402
>ref|NP_187348.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75186627|sp|Q9M907.1|PP217_ARATH RecName:
Full=Pentatricopeptide repeat-containing protein
At3g06920 gi|6728999|gb|AAF26996.1|AC016827_7
hypothetical protein [Arabidopsis thaliana]
gi|332640955|gb|AEE74476.1| pentatricopeptide
repeat-containing protein [Arabidopsis thaliana]
Length = 871
Score = 104 bits (259), Expect = 1e-20
Identities = 47/70 (67%), Positives = 57/70 (81%)
Frame = -3
Query: 212 MELERTVPCAHTYAIMIMGYGSAGRIDEAYRLLERQKLKGSMPSVIAYNCLLTCIGKHGR 33
+E R VPC + Y MIMGYGSAG+ DEAY LLERQ+ KGS+PSVIAYNC+LTC+ K G+
Sbjct: 299 LEKNRRVPCTYAYNTMIMGYGSAGKFDEAYSLLERQRAKGSIPSVIAYNCILTCLRKMGK 358
Query: 32 LDEALRTFEE 3
+DEAL+ FEE
Sbjct: 359 VDEALKVFEE 368
>ref|XP_003617758.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355519093|gb|AET00717.1| Pentatricopeptide
repeat-containing protein [Medicago truncatula]
Length = 906
Score = 103 bits (257), Expect = 2e-20
Identities = 45/71 (63%), Positives = 59/71 (83%)
Frame = -3
Query: 215 QMELERTVPCAHTYAIMIMGYGSAGRIDEAYRLLERQKLKGSMPSVIAYNCLLTCIGKHG 36
+++L R+VPC + Y MIMGYGSAG+ DEAY LLERQK KG +PSVIAYNC+LTC+G+ G
Sbjct: 333 ELDLNRSVPCVYAYNTMIMGYGSAGKFDEAYSLLERQKRKGCIPSVIAYNCILTCLGRKG 392
Query: 35 RLDEALRTFEE 3
+++EALR +E
Sbjct: 393 KVEEALRIHDE 403
>ref|XP_004296842.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g06920-like [Fragaria vesca subsp. vesca]
Length = 896
Score = 102 bits (253), Expect = 7e-20
Identities = 46/71 (64%), Positives = 54/71 (76%)
Frame = -3
Query: 215 QMELERTVPCAHTYAIMIMGYGSAGRIDEAYRLLERQKLKGSMPSVIAYNCLLTCIGKHG 36
+M+ R VPC + Y MIMGYGS G+ DEAY L ERQK KG +PSVIAYNC+LTC+GK G
Sbjct: 323 EMDANRKVPCVYAYNTMIMGYGSVGKFDEAYSLFERQKKKGCIPSVIAYNCVLTCLGKKG 382
Query: 35 RLDEALRTFEE 3
R +EALR F E
Sbjct: 383 RSEEALRVFNE 393
Score = 59.3 bits (142), Expect = 5e-07
Identities = 26/57 (45%), Positives = 37/57 (64%)
Frame = -3
Query: 176 YAIMIMGYGSAGRIDEAYRLLERQKLKGSMPSVIAYNCLLTCIGKHGRLDEALRTFE 6
Y ++ G+G GRIDEAY ++E KG P+V YNCLL + K G +DEA+ +F+
Sbjct: 685 YTSLVDGFGKVGRIDEAYLIMEELMQKGLSPNVYTYNCLLDALVKAGEIDEAIVSFQ 741
>gb|EXB74774.1| hypothetical protein L484_023516 [Morus notabilis]
Length = 417
Score = 100 bits (250), Expect = 2e-19
Identities = 47/69 (68%), Positives = 56/69 (81%)
Frame = -3
Query: 215 QMELERTVPCAHTYAIMIMGYGSAGRIDEAYRLLERQKLKGSMPSVIAYNCLLTCIGKHG 36
QM+L R VPCA+ Y MIMGY SAG+ DEAY LL+RQK KG +PSVIAYNC+LT +G+ G
Sbjct: 349 QMDLNRIVPCAYAYNTMIMGYSSAGKFDEAYSLLKRQKRKGCIPSVIAYNCILTGLGRKG 408
Query: 35 RLDEALRTF 9
R+DEALR F
Sbjct: 409 RVDEALRIF 417
>gb|ESW14398.1| hypothetical protein PHAVU_008G277600g, partial [Phaseolus
vulgaris]
Length = 911
Score = 100 bits (249), Expect = 2e-19
Identities = 43/71 (60%), Positives = 57/71 (80%)
Frame = -3
Query: 215 QMELERTVPCAHTYAIMIMGYGSAGRIDEAYRLLERQKLKGSMPSVIAYNCLLTCIGKHG 36
+++ R+VPC + Y MIMGYGS G+ D+AY LLERQK KG +PSVIAYNC+LTC+G+ G
Sbjct: 338 ELDRNRSVPCVYAYNTMIMGYGSVGKFDKAYSLLERQKRKGCIPSVIAYNCILTCLGRKG 397
Query: 35 RLDEALRTFEE 3
+++EA R FEE
Sbjct: 398 KVEEAFRIFEE 408
>ref|XP_002862796.1| hypothetical protein ARALYDRAFT_359368 [Arabidopsis lyrata subsp.
lyrata] gi|297308523|gb|EFH39054.1| hypothetical protein
ARALYDRAFT_359368 [Arabidopsis lyrata subsp. lyrata]
Length = 378
Score = 99.4 bits (246), Expect = 4e-19
Identities = 45/66 (68%), Positives = 54/66 (81%)
Frame = -3
Query: 212 MELERTVPCAHTYAIMIMGYGSAGRIDEAYRLLERQKLKGSMPSVIAYNCLLTCIGKHGR 33
+E R VPC + Y MIMGYGSAG+ DEAY LLERQ+ KGS+PSVIAYNC+LTC+ K G+
Sbjct: 313 LEKNRRVPCTYAYNTMIMGYGSAGKFDEAYSLLERQRAKGSIPSVIAYNCILTCLRKMGK 372
Query: 32 LDEALR 15
+DEALR
Sbjct: 373 VDEALR 378
>ref|XP_006407890.1| hypothetical protein EUTSA_v10020026mg [Eutrema salsugineum]
gi|557109036|gb|ESQ49343.1| hypothetical protein
EUTSA_v10020026mg [Eutrema salsugineum]
Length = 885
Score = 98.6 bits (244), Expect = 8e-19
Identities = 45/70 (64%), Positives = 56/70 (80%)
Frame = -3
Query: 212 MELERTVPCAHTYAIMIMGYGSAGRIDEAYRLLERQKLKGSMPSVIAYNCLLTCIGKHGR 33
+E R VPC + Y MIMGYGSAG+ +EAY LLERQ+ KGS+PSVIAYNC+LT + + G+
Sbjct: 313 LEKNRRVPCTYAYNTMIMGYGSAGKFEEAYSLLERQRAKGSIPSVIAYNCILTSLRRMGK 372
Query: 32 LDEALRTFEE 3
+DEALR FEE
Sbjct: 373 VDEALRMFEE 382
>ref|XP_006658440.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g06920-like [Oryza brachyantha]
Length = 881
Score = 96.3 bits (238), Expect = 4e-18
Identities = 42/70 (60%), Positives = 58/70 (82%)
Frame = -3
Query: 215 QMELERTVPCAHTYAIMIMGYGSAGRIDEAYRLLERQKLKGSMPSVIAYNCLLTCIGKHG 36
QME ER+VPCA+TY MIMGYGSAGR ++AY+LLER + +G +PSV+++N +LTC+GK
Sbjct: 308 QMEAERSVPCAYTYNTMIMGYGSAGRFEDAYKLLERLRERGCIPSVVSFNSILTCLGKKR 367
Query: 35 RLDEALRTFE 6
++D+AL FE
Sbjct: 368 KIDDALSLFE 377
>ref|XP_004164304.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At3g06920-like [Cucumis sativus]
Length = 904
Score = 96.3 bits (238), Expect = 4e-18
Identities = 40/70 (57%), Positives = 57/70 (81%)
Frame = -3
Query: 212 MELERTVPCAHTYAIMIMGYGSAGRIDEAYRLLERQKLKGSMPSVIAYNCLLTCIGKHGR 33
M+ + VPCA+ Y MIMGYG AG+ ++AY LLERQ+ KG +PSV++YNC+L+C+G+ G+
Sbjct: 331 MDQNKQVPCAYAYNTMIMGYGMAGKFEDAYSLLERQRRKGCIPSVVSYNCILSCLGRKGQ 390
Query: 32 LDEALRTFEE 3
+DEAL+ FEE
Sbjct: 391 VDEALKKFEE 400
>ref|XP_004134213.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g06920-like [Cucumis sativus]
Length = 904
Score = 96.3 bits (238), Expect = 4e-18
Identities = 40/70 (57%), Positives = 57/70 (81%)
Frame = -3
Query: 212 MELERTVPCAHTYAIMIMGYGSAGRIDEAYRLLERQKLKGSMPSVIAYNCLLTCIGKHGR 33
M+ + VPCA+ Y MIMGYG AG+ ++AY LLERQ+ KG +PSV++YNC+L+C+G+ G+
Sbjct: 331 MDQNKQVPCAYAYNTMIMGYGMAGKFEDAYSLLERQRRKGCIPSVVSYNCILSCLGRKGQ 390
Query: 32 LDEALRTFEE 3
+DEAL+ FEE
Sbjct: 391 VDEALKKFEE 400