BLASTX nr result
ID: Catharanthus23_contig00036291
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Catharanthus23_contig00036291
(437 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-... 144 6e-33
gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group] 144 6e-33
emb|CAJ86151.1| H0413E07.4 [Oryza sativa Indica Group] 144 6e-33
emb|CAJ86192.1| H0306F03.15 [Oryza sativa Indica Group] 144 6e-33
gb|ABA99474.1| retrotransposon protein, putative, Ty1-copia subc... 142 1e-32
gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subc... 142 2e-32
gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group] 142 2e-32
gb|AAP53216.2| retrotransposon protein, putative, Ty1-copia subc... 142 2e-32
gb|AAM08562.1|AC092749_15 Putative retroelement [Oryza sativa Ja... 142 2e-32
gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subc... 138 5e-32
gb|ABD32732.1| hypothetical protein MtrDRAFT_AC150777g7v1 [Medic... 137 6e-32
emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis] 141 8e-32
gb|AAT44282.1| putative polyprotein [Oryza sativa Japonica Group] 140 2e-31
gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group... 135 5e-31
emb|CAD40121.3| OSJNBa0061C06.5 [Oryza sativa Japonica Group] 137 7e-31
gb|AAT44257.1| putative polyprotein [Oryza sativa Japonica Group] 137 8e-31
gb|AAT01387.1| putative polyprotein [Oryza sativa Japonica Group... 133 1e-30
gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-... 133 2e-30
emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group] 133 2e-30
gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subc... 133 2e-30
>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
Japonica Group] gi|77548751|gb|ABA91548.1|
retrotransposon protein, putative, Ty1-copia subclass
[Oryza sativa Japonica Group]
Length = 2340
Score = 144 bits (362), Expect(2) = 6e-33
Identities = 76/126 (60%), Positives = 87/126 (69%)
Frame = +3
Query: 39 ETAILHGELEETIYMRQPPDFEVKGKEHMTCLLKKSLYEVKKSPRQWYKRFDSFML*DGF 218
+TA LHGELEE IYM QP F V GKE++ C LKKSLY +K+SPRQWYKRFDSFML F
Sbjct: 1137 KTAFLHGELEEDIYMEQPKGFVVPGKENLVCRLKKSLYGLKQSPRQWYKRFDSFMLSQKF 1196
Query: 219 IKSNYDSCPYFCGDDVGNAVYLLLYVDDILIAYXXXXXXXXXXXXXXXEFDMKDLGYASR 398
+SNYDSC Y D G+A+YLLLYVDD+LIA EF+MKDLG A +
Sbjct: 1197 RRSNYDSCVYLKVVD-GSAIYLLLYVDDMLIAAKDKSEIAKLKAQLSSEFEMKDLGAAKK 1255
Query: 399 ILGMNI 416
ILGM I
Sbjct: 1256 ILGMEI 1261
Score = 22.7 bits (47), Expect(2) = 6e-33
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +1
Query: 1 VGL*DLELEQLDVKLQF 51
V + D ELEQ+DVK F
Sbjct: 1124 VAMHDYELEQMDVKTAF 1140
>gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1241
Score = 144 bits (362), Expect(2) = 6e-33
Identities = 76/126 (60%), Positives = 87/126 (69%)
Frame = +3
Query: 39 ETAILHGELEETIYMRQPPDFEVKGKEHMTCLLKKSLYEVKKSPRQWYKRFDSFML*DGF 218
+TA LHGELEE IYM QP F V GKE++ C LKKSLY +K+SPRQWYKRFDSFML F
Sbjct: 839 KTAFLHGELEEDIYMEQPEGFVVPGKENLVCRLKKSLYGLKQSPRQWYKRFDSFMLSQKF 898
Query: 219 IKSNYDSCPYFCGDDVGNAVYLLLYVDDILIAYXXXXXXXXXXXXXXXEFDMKDLGYASR 398
+SNYDSC Y D G+A+YLLLYVDD+LIA EF+MKDLG A +
Sbjct: 899 RRSNYDSCVYLKVVD-GSAIYLLLYVDDMLIAAKDKSEIAKLKAQLSSEFEMKDLGAAKK 957
Query: 399 ILGMNI 416
ILGM I
Sbjct: 958 ILGMEI 963
Score = 22.7 bits (47), Expect(2) = 6e-33
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +1
Query: 1 VGL*DLELEQLDVKLQF 51
V + D ELEQ+DVK F
Sbjct: 826 VAMHDYELEQMDVKTAF 842
>emb|CAJ86151.1| H0413E07.4 [Oryza sativa Indica Group]
Length = 1205
Score = 144 bits (362), Expect(2) = 6e-33
Identities = 76/126 (60%), Positives = 87/126 (69%)
Frame = +3
Query: 39 ETAILHGELEETIYMRQPPDFEVKGKEHMTCLLKKSLYEVKKSPRQWYKRFDSFML*DGF 218
+TA LHGELEE IYM QP F V GKE++ C LKKSLY +K+SPRQWYKRFDSFML F
Sbjct: 856 KTAFLHGELEEDIYMEQPEGFVVPGKENLVCRLKKSLYGLKQSPRQWYKRFDSFMLSQKF 915
Query: 219 IKSNYDSCPYFCGDDVGNAVYLLLYVDDILIAYXXXXXXXXXXXXXXXEFDMKDLGYASR 398
+SNYDSC Y D G+A+YLLLYVDD+LIA EF+MKDLG A +
Sbjct: 916 RRSNYDSCVYLKVVD-GSAIYLLLYVDDMLIAAKDKSEIAKLKAQLSSEFEMKDLGAAKK 974
Query: 399 ILGMNI 416
ILGM I
Sbjct: 975 ILGMEI 980
Score = 22.7 bits (47), Expect(2) = 6e-33
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +1
Query: 1 VGL*DLELEQLDVKLQF 51
V + D ELEQ+DVK F
Sbjct: 843 VAMHDYELEQMDVKTAF 859
>emb|CAJ86192.1| H0306F03.15 [Oryza sativa Indica Group]
Length = 1037
Score = 144 bits (362), Expect(2) = 6e-33
Identities = 76/126 (60%), Positives = 87/126 (69%)
Frame = +3
Query: 39 ETAILHGELEETIYMRQPPDFEVKGKEHMTCLLKKSLYEVKKSPRQWYKRFDSFML*DGF 218
+TA LHGELEE IYM QP F V GKE++ C LKKSLY +K+SPRQWYKRFDSFML F
Sbjct: 688 KTAFLHGELEEDIYMEQPEGFVVPGKENLVCRLKKSLYGLKQSPRQWYKRFDSFMLSQKF 747
Query: 219 IKSNYDSCPYFCGDDVGNAVYLLLYVDDILIAYXXXXXXXXXXXXXXXEFDMKDLGYASR 398
+SNYDSC Y D G+A+YLLLYVDD+LIA EF+MKDLG A +
Sbjct: 748 RRSNYDSCVYLKVVD-GSAIYLLLYVDDMLIAAKDKSEIAKLKAQLSSEFEMKDLGAAKK 806
Query: 399 ILGMNI 416
ILGM I
Sbjct: 807 ILGMEI 812
Score = 22.7 bits (47), Expect(2) = 6e-33
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +1
Query: 1 VGL*DLELEQLDVKLQF 51
V + D ELEQ+DVK F
Sbjct: 675 VAMHDYELEQMDVKTAF 691
>gb|ABA99474.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 983
Score = 142 bits (359), Expect(2) = 1e-32
Identities = 75/126 (59%), Positives = 87/126 (69%)
Frame = +3
Query: 39 ETAILHGELEETIYMRQPPDFEVKGKEHMTCLLKKSLYEVKKSPRQWYKRFDSFML*DGF 218
+TA LHGELEE IYM QP F V GKE++ C LKKSLY +K+SPRQWYKRFDSFML F
Sbjct: 672 KTAFLHGELEEDIYMEQPEGFVVPGKENLVCRLKKSLYGLKQSPRQWYKRFDSFMLSQKF 731
Query: 219 IKSNYDSCPYFCGDDVGNAVYLLLYVDDILIAYXXXXXXXXXXXXXXXEFDMKDLGYASR 398
+SNYD+C Y D G+A+YLLLYVDD+LIA EF+MKDLG A +
Sbjct: 732 RRSNYDNCVYLKVVD-GSAIYLLLYVDDMLIAAKDKSEIEKLKAQLSSEFEMKDLGAAKK 790
Query: 399 ILGMNI 416
ILGM I
Sbjct: 791 ILGMEI 796
Score = 22.7 bits (47), Expect(2) = 1e-32
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +1
Query: 1 VGL*DLELEQLDVKLQF 51
V + D ELEQ+DVK F
Sbjct: 659 VAMHDYELEQMDVKTAF 675
>gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1312
Score = 142 bits (358), Expect(2) = 2e-32
Identities = 76/126 (60%), Positives = 86/126 (68%)
Frame = +3
Query: 39 ETAILHGELEETIYMRQPPDFEVKGKEHMTCLLKKSLYEVKKSPRQWYKRFDSFML*DGF 218
+TA LHGELEE IYM QP F V GKE++ C LKKSLY +K+SPRQWYKRFDSFML F
Sbjct: 965 KTAFLHGELEEDIYMEQPEGFVVLGKENLVCRLKKSLYGLKQSPRQWYKRFDSFMLSQKF 1024
Query: 219 IKSNYDSCPYFCGDDVGNAVYLLLYVDDILIAYXXXXXXXXXXXXXXXEFDMKDLGYASR 398
+SNYDSC Y D G+A+YLLLYVDD+LIA EF MKDLG A +
Sbjct: 1025 RRSNYDSCVYLKVVD-GSAIYLLLYVDDMLIAAKDKSEIAKLKAQLSSEFGMKDLGAAKK 1083
Query: 399 ILGMNI 416
ILGM I
Sbjct: 1084 ILGMEI 1089
Score = 22.7 bits (47), Expect(2) = 2e-32
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +1
Query: 1 VGL*DLELEQLDVKLQF 51
V + D ELEQ+DVK F
Sbjct: 952 VAMHDYELEQMDVKTAF 968
>gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1280
Score = 142 bits (358), Expect(2) = 2e-32
Identities = 76/126 (60%), Positives = 86/126 (68%)
Frame = +3
Query: 39 ETAILHGELEETIYMRQPPDFEVKGKEHMTCLLKKSLYEVKKSPRQWYKRFDSFML*DGF 218
+TA LHGELEE IYM QP F V GKE++ C LKKSLY +K+SPRQWYKRFDSFML F
Sbjct: 965 KTAFLHGELEEDIYMEQPEGFVVLGKENLVCRLKKSLYGLKQSPRQWYKRFDSFMLSQKF 1024
Query: 219 IKSNYDSCPYFCGDDVGNAVYLLLYVDDILIAYXXXXXXXXXXXXXXXEFDMKDLGYASR 398
+SNYDSC Y D G+A+YLLLYVDD+LIA EF MKDLG A +
Sbjct: 1025 RRSNYDSCVYLKVVD-GSAIYLLLYVDDMLIAAKDKSEIAKLKAQLSSEFGMKDLGAAKK 1083
Query: 399 ILGMNI 416
ILGM I
Sbjct: 1084 ILGMEI 1089
Score = 22.7 bits (47), Expect(2) = 2e-32
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +1
Query: 1 VGL*DLELEQLDVKLQF 51
V + D ELEQ+DVK F
Sbjct: 952 VAMHDYELEQMDVKTAF 968
>gb|AAP53216.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1262
Score = 142 bits (357), Expect(2) = 2e-32
Identities = 75/126 (59%), Positives = 87/126 (69%)
Frame = +3
Query: 39 ETAILHGELEETIYMRQPPDFEVKGKEHMTCLLKKSLYEVKKSPRQWYKRFDSFML*DGF 218
+TA LHGELEE IYM QP F V GKE++ C LKKSLY +K+SPRQWYKRFDSFML F
Sbjct: 903 KTAFLHGELEEDIYMEQPEGFVVPGKENLVCRLKKSLYGLKQSPRQWYKRFDSFMLSQKF 962
Query: 219 IKSNYDSCPYFCGDDVGNAVYLLLYVDDILIAYXXXXXXXXXXXXXXXEFDMKDLGYASR 398
+SNYDSC Y D G+A+YLLLYV+D+LIA EF+MKDLG A +
Sbjct: 963 RRSNYDSCVYLKVVD-GSAIYLLLYVNDMLIAAKDKLEIAKLKAQLSSEFEMKDLGAAKK 1021
Query: 399 ILGMNI 416
ILGM I
Sbjct: 1022 ILGMEI 1027
Score = 22.7 bits (47), Expect(2) = 2e-32
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +1
Query: 1 VGL*DLELEQLDVKLQF 51
V + D ELEQ+DVK F
Sbjct: 890 VAMYDYELEQMDVKTAF 906
>gb|AAM08562.1|AC092749_15 Putative retroelement [Oryza sativa Japonica Group]
gi|20087076|gb|AAM10749.1|AC112514_2 Putative
retroelement [Oryza sativa Japonica Group]
Length = 1225
Score = 142 bits (357), Expect(2) = 2e-32
Identities = 75/126 (59%), Positives = 87/126 (69%)
Frame = +3
Query: 39 ETAILHGELEETIYMRQPPDFEVKGKEHMTCLLKKSLYEVKKSPRQWYKRFDSFML*DGF 218
+TA LHGELEE IYM QP F V GKE++ C LKKSLY +K+SPRQWYKRFDSFML F
Sbjct: 866 KTAFLHGELEEDIYMEQPEGFVVPGKENLVCRLKKSLYGLKQSPRQWYKRFDSFMLSQKF 925
Query: 219 IKSNYDSCPYFCGDDVGNAVYLLLYVDDILIAYXXXXXXXXXXXXXXXEFDMKDLGYASR 398
+SNYDSC Y D G+A+YLLLYV+D+LIA EF+MKDLG A +
Sbjct: 926 RRSNYDSCVYLKVVD-GSAIYLLLYVNDMLIAAKDKLEIAKLKAQLSSEFEMKDLGAAKK 984
Query: 399 ILGMNI 416
ILGM I
Sbjct: 985 ILGMEI 990
Score = 22.7 bits (47), Expect(2) = 2e-32
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +1
Query: 1 VGL*DLELEQLDVKLQF 51
V + D ELEQ+DVK F
Sbjct: 853 VAMYDYELEQMDVKTAF 869
>gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1278
Score = 138 bits (347), Expect(2) = 5e-32
Identities = 75/129 (58%), Positives = 85/129 (65%)
Frame = +3
Query: 39 ETAILHGELEETIYMRQPPDFEVKGKEHMTCLLKKSLYEVKKSPRQWYKRFDSFML*DGF 218
+TA LHGELEE IYM QP F V GKE C LK+SLY +K+SPRQWYKRFDSFML GF
Sbjct: 920 KTAFLHGELEEEIYMDQPEGFIVPGKEDYVCKLKRSLYGLKQSPRQWYKRFDSFMLSHGF 979
Query: 219 IKSNYDSCPYFCGDDVGNAVYLLLYVDDILIAYXXXXXXXXXXXXXXXEFDMKDLGYASR 398
+S +DSC Y + G+ +YLLLYVDDILIA EFDMKDLG A +
Sbjct: 980 KRSEFDSCVYIKFVN-GSPIYLLLYVDDILIAAKSKEQITTLKKQLSSEFDMKDLGAAKK 1038
Query: 399 ILGMNIDID 425
ILGM I D
Sbjct: 1039 ILGMEITRD 1047
Score = 25.4 bits (54), Expect(2) = 5e-32
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = +1
Query: 1 VGL*DLELEQLDVKLQF 51
V + DLELEQLDVK F
Sbjct: 907 VAMHDLELEQLDVKTAF 923
>gb|ABD32732.1| hypothetical protein MtrDRAFT_AC150777g7v1 [Medicago truncatula]
Length = 624
Score = 137 bits (344), Expect(2) = 6e-32
Identities = 70/129 (54%), Positives = 82/129 (63%)
Frame = +3
Query: 39 ETAILHGELEETIYMRQPPDFEVKGKEHMTCLLKKSLYEVKKSPRQWYKRFDSFML*DGF 218
+TA LHGELEE IYM Q F GKEH+ C LKKSLY +K++PRQWYKRF SFM+ +
Sbjct: 279 KTAFLHGELEEEIYMEQSDGFIAPGKEHLVCRLKKSLYGLKQAPRQWYKRFHSFMIGQNY 338
Query: 219 IKSNYDSCPYFCGDDVGNAVYLLLYVDDILIAYXXXXXXXXXXXXXXXEFDMKDLGYASR 398
KS YD C YF G+ +YLLLYVDD+LIA EFDMK+LG A +
Sbjct: 339 CKSQYDDCIYFQNFQNGSFIYLLLYVDDMLIASRDKSLIKKLKTELSNEFDMKELGAAKK 398
Query: 399 ILGMNIDID 425
ILGM I D
Sbjct: 399 ILGMEIRRD 407
Score = 26.2 bits (56), Expect(2) = 6e-32
Identities = 13/17 (76%), Positives = 13/17 (76%)
Frame = +1
Query: 1 VGL*DLELEQLDVKLQF 51
V L DLELEQLDVK F
Sbjct: 266 VALFDLELEQLDVKTAF 282
>emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis]
Length = 1334
Score = 141 bits (356), Expect = 8e-32
Identities = 72/126 (57%), Positives = 82/126 (65%)
Frame = +3
Query: 39 ETAILHGELEETIYMRQPPDFEVKGKEHMTCLLKKSLYEVKKSPRQWYKRFDSFML*DGF 218
+TA LHG LEE I M QP FE K KE CLL KSLY +K+SPRQWY+RFD FM+ G+
Sbjct: 928 KTAFLHGNLEEQILMAQPEGFECKDKEDYVCLLHKSLYGLKQSPRQWYRRFDDFMVSKGY 987
Query: 219 IKSNYDSCPYFCGDDVGNAVYLLLYVDDILIAYXXXXXXXXXXXXXXXEFDMKDLGYASR 398
+S YDSC YF G D G YLLLYVDD+LIA EF+MKDLG A R
Sbjct: 988 RRSRYDSCVYFGGSDQGGVAYLLLYVDDMLIASKYKSEIERLKNLLKAEFEMKDLGNAKR 1047
Query: 399 ILGMNI 416
ILGM+I
Sbjct: 1048 ILGMDI 1053
>gb|AAT44282.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1243
Score = 140 bits (353), Expect = 2e-31
Identities = 75/126 (59%), Positives = 85/126 (67%)
Frame = +3
Query: 39 ETAILHGELEETIYMRQPPDFEVKGKEHMTCLLKKSLYEVKKSPRQWYKRFDSFML*DGF 218
+TA LHGELEE IYM QP F V GKE++ C LKKSLY +K+SPRQWYKRFDSFML F
Sbjct: 902 KTAFLHGELEEDIYMEQPEGFVVPGKENLVCRLKKSLYGLKQSPRQWYKRFDSFMLSQKF 961
Query: 219 IKSNYDSCPYFCGDDVGNAVYLLLYVDDILIAYXXXXXXXXXXXXXXXEFDMKDLGYASR 398
SNYDSC Y D G+ +YLLLYVDD+LIA EF+MKDLG A +
Sbjct: 962 RISNYDSCVYLKVVD-GSVIYLLLYVDDMLIAAKDKSEIEKLKAQLSSEFEMKDLGAAKK 1020
Query: 399 ILGMNI 416
ILGM I
Sbjct: 1021 ILGMEI 1026
>gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group]
gi|53370655|gb|AAU89150.1| integrase core domain
containing protein [Oryza sativa Japonica Group]
gi|108710286|gb|ABF98081.1| retrotransposon protein,
putative, Ty1-copia subclass [Oryza sativa Japonica
Group]
Length = 1322
Score = 135 bits (340), Expect(2) = 5e-31
Identities = 73/129 (56%), Positives = 84/129 (65%)
Frame = +3
Query: 39 ETAILHGELEETIYMRQPPDFEVKGKEHMTCLLKKSLYEVKKSPRQWYKRFDSFML*DGF 218
+T LHGELEE IYM QP F V GKE C LK+SLY +K+SPRQWYKRFDSFML GF
Sbjct: 920 KTTFLHGELEEEIYMDQPEGFIVPGKEDYVCKLKRSLYGLKQSPRQWYKRFDSFMLSHGF 979
Query: 219 IKSNYDSCPYFCGDDVGNAVYLLLYVDDILIAYXXXXXXXXXXXXXXXEFDMKDLGYASR 398
+S +DSC Y + G+ +YLLLYVDD+LIA EFDMKDLG A +
Sbjct: 980 KRSEFDSCVYIKFVN-GSPIYLLLYVDDMLIAAKSKEQITTLKKQLSSEFDMKDLGAAKK 1038
Query: 399 ILGMNIDID 425
ILGM I D
Sbjct: 1039 ILGMEITRD 1047
Score = 24.6 bits (52), Expect(2) = 5e-31
Identities = 11/13 (84%), Positives = 11/13 (84%)
Frame = +1
Query: 13 DLELEQLDVKLQF 51
DLELEQLDVK F
Sbjct: 911 DLELEQLDVKTTF 923
>emb|CAD40121.3| OSJNBa0061C06.5 [Oryza sativa Japonica Group]
Length = 621
Score = 137 bits (344), Expect(2) = 7e-31
Identities = 72/124 (58%), Positives = 84/124 (67%)
Frame = +3
Query: 39 ETAILHGELEETIYMRQPPDFEVKGKEHMTCLLKKSLYEVKKSPRQWYKRFDSFML*DGF 218
+TA LHGELEE IYM QP F V GKE++ C LKKSLY +K+SPRQWYKRFDSFML F
Sbjct: 316 KTAFLHGELEEDIYMEQPEGFVVPGKENLVCRLKKSLYGLKQSPRQWYKRFDSFMLSQKF 375
Query: 219 IKSNYDSCPYFCGDDVGNAVYLLLYVDDILIAYXXXXXXXXXXXXXXXEFDMKDLGYASR 398
+SNYDSC Y D G+A+YLLLYVDD+LIA EF+MKDLG +
Sbjct: 376 RRSNYDSCVYVKVAD-GSAIYLLLYVDDMLIAAKDKSEIAKLKAQLSSEFEMKDLGAVKK 434
Query: 399 ILGM 410
IL +
Sbjct: 435 ILDL 438
Score = 22.7 bits (47), Expect(2) = 7e-31
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +1
Query: 1 VGL*DLELEQLDVKLQF 51
V + D ELEQ+DVK F
Sbjct: 303 VAMHDYELEQMDVKTAF 319
>gb|AAT44257.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1211
Score = 137 bits (344), Expect(2) = 8e-31
Identities = 73/126 (57%), Positives = 85/126 (67%)
Frame = +3
Query: 39 ETAILHGELEETIYMRQPPDFEVKGKEHMTCLLKKSLYEVKKSPRQWYKRFDSFML*DGF 218
+TA LHGELEE IYM QP F V GKE++ LKKSLY +K+SPRQWYKRFDSFM F
Sbjct: 809 KTAFLHGELEEDIYMEQPEGFVVPGKENLVYRLKKSLYGLKQSPRQWYKRFDSFMFSQKF 868
Query: 219 IKSNYDSCPYFCGDDVGNAVYLLLYVDDILIAYXXXXXXXXXXXXXXXEFDMKDLGYASR 398
+SNYDSC Y D G+++YLLLYVDD+LIA EF+MKDLG A +
Sbjct: 869 RRSNYDSCVYLKVVD-GSSIYLLLYVDDMLIAAKDKSEIEKLKAQLSSEFEMKDLGAAKK 927
Query: 399 ILGMNI 416
ILGM I
Sbjct: 928 ILGMEI 933
Score = 22.3 bits (46), Expect(2) = 8e-31
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +1
Query: 1 VGL*DLELEQLDVKLQF 51
V + D ELEQ+DVK F
Sbjct: 796 VAVHDYELEQMDVKTAF 812
>gb|AAT01387.1| putative polyprotein [Oryza sativa Japonica Group]
gi|48475101|gb|AAT44170.1| putative polyprotein [Oryza
sativa Japonica Group]
Length = 1175
Score = 133 bits (335), Expect(2) = 1e-30
Identities = 73/129 (56%), Positives = 84/129 (65%)
Frame = +3
Query: 39 ETAILHGELEETIYMRQPPDFEVKGKEHMTCLLKKSLYEVKKSPRQWYKRFDSFML*DGF 218
+TA LHGELEE IYM QP F V GKE C LK+SLY +K+SPRQWYKRFDSFML GF
Sbjct: 773 KTAFLHGELEEEIYMDQPEGFIVPGKEDYVCKLKRSLYGLKQSPRQWYKRFDSFMLSHGF 832
Query: 219 IKSNYDSCPYFCGDDVGNAVYLLLYVDDILIAYXXXXXXXXXXXXXXXEFDMKDLGYASR 398
+S +DSC Y +V + +YLLLYVDD+LIA EFDMKDL A +
Sbjct: 833 KRSEFDSCVYIKFVNV-SPIYLLLYVDDMLIAAKSKEQITTLKKQLSSEFDMKDLDAAKK 891
Query: 399 ILGMNIDID 425
ILGM I D
Sbjct: 892 ILGMEITRD 900
Score = 25.4 bits (54), Expect(2) = 1e-30
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = +1
Query: 1 VGL*DLELEQLDVKLQF 51
V + DLELEQLDVK F
Sbjct: 760 VAMHDLELEQLDVKTAF 776
>gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
Japonica Group] gi|77549942|gb|ABA92739.1|
retrotransposon protein, putative, Ty1-copia subclass
[Oryza sativa Japonica Group]
Length = 1373
Score = 133 bits (335), Expect(2) = 2e-30
Identities = 73/129 (56%), Positives = 83/129 (64%)
Frame = +3
Query: 39 ETAILHGELEETIYMRQPPDFEVKGKEHMTCLLKKSLYEVKKSPRQWYKRFDSFML*DGF 218
+TA LHGELEE IYM QP F V GKE C LK+SLY +K+SPRQW KRFDSFML F
Sbjct: 931 KTAFLHGELEEDIYMDQPEGFIVPGKEKYVCKLKRSLYGLKQSPRQWNKRFDSFMLSHSF 990
Query: 219 IKSNYDSCPYFCGDDVGNAVYLLLYVDDILIAYXXXXXXXXXXXXXXXEFDMKDLGYASR 398
+S YDSC Y + G+ +YLLLYVDD+LIA EFDMKDLG A +
Sbjct: 991 KRSKYDSCVYIKHVN-GSPIYLLLYVDDMLIAAKSKIEITKLKKLLSSEFDMKDLGSAKK 1049
Query: 399 ILGMNIDID 425
ILGM I D
Sbjct: 1050 ILGMEISRD 1058
Score = 24.6 bits (52), Expect(2) = 2e-30
Identities = 11/13 (84%), Positives = 11/13 (84%)
Frame = +1
Query: 13 DLELEQLDVKLQF 51
DLELEQLDVK F
Sbjct: 922 DLELEQLDVKTAF 934
>emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group]
Length = 1335
Score = 133 bits (335), Expect(2) = 2e-30
Identities = 73/129 (56%), Positives = 83/129 (64%)
Frame = +3
Query: 39 ETAILHGELEETIYMRQPPDFEVKGKEHMTCLLKKSLYEVKKSPRQWYKRFDSFML*DGF 218
+TA LHGELEE IYM QP F V GKE C LK+SLY +K+SPRQW KRFDSFML F
Sbjct: 933 KTAFLHGELEEDIYMDQPEGFIVPGKEKYVCKLKRSLYGLKQSPRQWNKRFDSFMLSHSF 992
Query: 219 IKSNYDSCPYFCGDDVGNAVYLLLYVDDILIAYXXXXXXXXXXXXXXXEFDMKDLGYASR 398
+S YDSC Y + G+ +YLLLYVDD+LIA EFDMKDLG A +
Sbjct: 993 KRSKYDSCVYIKHVN-GSPIYLLLYVDDMLIAAKSKIEITKLKKLLSSEFDMKDLGSAKK 1051
Query: 399 ILGMNIDID 425
ILGM I D
Sbjct: 1052 ILGMEISRD 1060
Score = 24.6 bits (52), Expect(2) = 2e-30
Identities = 11/13 (84%), Positives = 11/13 (84%)
Frame = +1
Query: 13 DLELEQLDVKLQF 51
DLELEQLDVK F
Sbjct: 924 DLELEQLDVKTAF 936
>gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1333
Score = 133 bits (335), Expect(2) = 2e-30
Identities = 73/129 (56%), Positives = 83/129 (64%)
Frame = +3
Query: 39 ETAILHGELEETIYMRQPPDFEVKGKEHMTCLLKKSLYEVKKSPRQWYKRFDSFML*DGF 218
+TA LHGELEE IYM QP F V GKE C LK+SLY +K+SPRQW KRFDSFML F
Sbjct: 931 KTAFLHGELEEDIYMDQPEGFIVPGKEKYVCKLKRSLYGLKQSPRQWNKRFDSFMLSHSF 990
Query: 219 IKSNYDSCPYFCGDDVGNAVYLLLYVDDILIAYXXXXXXXXXXXXXXXEFDMKDLGYASR 398
+S YDSC Y + G+ +YLLLYVDD+LIA EFDMKDLG A +
Sbjct: 991 KRSKYDSCVYIKHVN-GSPIYLLLYVDDMLIAAKSKIEITKLKKLLSSEFDMKDLGSAKK 1049
Query: 399 ILGMNIDID 425
ILGM I D
Sbjct: 1050 ILGMEISRD 1058
Score = 24.6 bits (52), Expect(2) = 2e-30
Identities = 11/13 (84%), Positives = 11/13 (84%)
Frame = +1
Query: 13 DLELEQLDVKLQF 51
DLELEQLDVK F
Sbjct: 922 DLELEQLDVKTAF 934