BLASTX nr result
ID: Catharanthus23_contig00036266
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Catharanthus23_contig00036266
(229 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAT07563.1| putative polyprotein [Oryza sativa Japonica Group... 106 4e-21
gb|AAU43956.1| unknown protein [Oryza sativa Japonica Group] gi|... 105 6e-21
gb|ABA97652.1| retrotransposon protein, putative, Ty1-copia subc... 105 8e-21
gb|ABF99203.1| retrotransposon protein, putative, Ty1-copia subc... 103 2e-20
gb|AAU10682.1| putative polyprotein [Oryza sativa Japonica Group] 103 2e-20
gb|AAK09230.1|AC084320_17 putative copia-like retrotransposon Ho... 103 2e-20
gb|ACY72569.1| unknown [Oryza sativa Japonica Group] 102 4e-20
ref|XP_004967136.1| PREDICTED: uncharacterized protein LOC101762... 101 1e-19
gb|ABA98049.1| retrotransposon protein, putative, Ty1-copia subc... 101 1e-19
gb|ABA98286.2| retrotransposon protein, putative, Ty1-copia subc... 101 1e-19
gb|ABA97707.2| retrotransposon protein, putative, Ty1-copia subc... 101 1e-19
gb|AAN06870.1| Putative gag-pol polyprotein [Oryza sativa Japoni... 100 2e-19
dbj|BAB90546.1| putative rice retrotransposon retrofit gag/pol p... 100 2e-19
gb|ACV42639.1| gag/pol [Oryza sativa Japonica Group] 100 2e-19
gb|ABA98728.2| retrotransposon protein, putative, Ty1-copia subc... 100 2e-19
gb|AAU90262.1| integrase core domain containing protein [Oryza s... 100 2e-19
gb|AAP94600.1| putative copia-like retrotransposon Hopscotch pol... 100 3e-19
gb|AAL66754.1|AF464738_5 putative copia-like retrotransposon Hop... 100 3e-19
gb|AAT85031.1| putative polyprotein [Oryza sativa Japonica Group... 100 3e-19
gb|AAR88589.1| putative copia-like retrotransposon protein [Oryz... 100 3e-19
>gb|AAT07563.1| putative polyprotein [Oryza sativa Japonica Group]
gi|46981313|gb|AAT07631.1| putative polyprotein [Oryza
sativa Japonica Group]
Length = 1431
Score = 106 bits (264), Expect = 4e-21
Identities = 52/75 (69%), Positives = 58/75 (77%)
Frame = -1
Query: 229 EYHKLHSILAKTGIAHLVSCPHTHQQNGLVERKHRHVVEVALSLLAQSHMPIKF*DEAIQ 50
EY KLH+ + GI+H VSCPHTHQQNG VERKHRH+VEV LSLLA + MP+KF DEA
Sbjct: 574 EYLKLHTFFNEIGISHHVSCPHTHQQNGAVERKHRHIVEVGLSLLAHASMPLKFWDEAFL 633
Query: 49 TACYLIYRLPSKDIK 5
A YLI RLPSK IK
Sbjct: 634 AATYLINRLPSKVIK 648
>gb|AAU43956.1| unknown protein [Oryza sativa Japonica Group]
gi|52353503|gb|AAU44069.1| putative polyprotein [Oryza
sativa Japonica Group]
Length = 1447
Score = 105 bits (262), Expect = 6e-21
Identities = 50/72 (69%), Positives = 54/72 (75%)
Frame = -1
Query: 229 EYHKLHSILAKTGIAHLVSCPHTHQQNGLVERKHRHVVEVALSLLAQSHMPIKF*DEAIQ 50
EY KLHS K GI H VSCPHTHQQNG ERKHRH+VEV L+LLA S MP+KF DEA Q
Sbjct: 587 EYEKLHSFFTKIGITHHVSCPHTHQQNGSAERKHRHIVEVGLTLLAYSSMPLKFWDEAFQ 646
Query: 49 TACYLIYRLPSK 14
A YLI R P+K
Sbjct: 647 AAVYLINRTPTK 658
>gb|ABA97652.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1145
Score = 105 bits (261), Expect = 8e-21
Identities = 49/75 (65%), Positives = 58/75 (77%)
Frame = -1
Query: 229 EYHKLHSILAKTGIAHLVSCPHTHQQNGLVERKHRHVVEVALSLLAQSHMPIKF*DEAIQ 50
EY L+S +K GI H VSCPHTHQQNG ERKHRH+VEV LSLL+ +HMP+KF DEA Q
Sbjct: 457 EYRALNSFFSKIGIVHHVSCPHTHQQNGSAERKHRHIVEVGLSLLSHAHMPLKFWDEAFQ 516
Query: 49 TACYLIYRLPSKDIK 5
A YLI R+PS+ I+
Sbjct: 517 AATYLINRVPSRVIQ 531
>gb|ABF99203.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1177
Score = 103 bits (257), Expect = 2e-20
Identities = 50/74 (67%), Positives = 56/74 (75%)
Frame = -1
Query: 229 EYHKLHSILAKTGIAHLVSCPHTHQQNGLVERKHRHVVEVALSLLAQSHMPIKF*DEAIQ 50
EY KL+S + GIAH VSCPHTHQQNG VERKHRH+VE+ LSLLA + MP+KF DEA
Sbjct: 464 EYQKLNSFFKQIGIAHQVSCPHTHQQNGAVERKHRHIVEIGLSLLAHASMPLKFWDEAFL 523
Query: 49 TACYLIYRLPSKDI 8
A YLI RLP K I
Sbjct: 524 AATYLINRLPRKVI 537
>gb|AAU10682.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1210
Score = 103 bits (257), Expect = 2e-20
Identities = 50/75 (66%), Positives = 55/75 (73%)
Frame = -1
Query: 229 EYHKLHSILAKTGIAHLVSCPHTHQQNGLVERKHRHVVEVALSLLAQSHMPIKF*DEAIQ 50
EY KLH K GI+H VSCPHTHQQNG ERKHRH+VEV LSLLA + MP+KF DEA
Sbjct: 578 EYEKLHDFFTKIGISHHVSCPHTHQQNGSAERKHRHIVEVGLSLLAHASMPLKFWDEAFI 637
Query: 49 TACYLIYRLPSKDIK 5
A YLI R PSK I+
Sbjct: 638 AATYLINRTPSKVIQ 652
>gb|AAK09230.1|AC084320_17 putative copia-like retrotransposon Hopscotch polyprotein [Oryza
sativa Japonica Group]
gi|14718304|gb|AAK72882.1|AC091123_1 putative gag-pol
protein [Oryza sativa Japonica Group]
Length = 1219
Score = 103 bits (257), Expect = 2e-20
Identities = 50/74 (67%), Positives = 56/74 (75%)
Frame = -1
Query: 229 EYHKLHSILAKTGIAHLVSCPHTHQQNGLVERKHRHVVEVALSLLAQSHMPIKF*DEAIQ 50
EY KL+S + GIAH VSCPHTHQQNG VERKHRH+VE+ LSLLA + MP+KF DEA
Sbjct: 575 EYQKLNSFFKQIGIAHQVSCPHTHQQNGAVERKHRHIVEIGLSLLAHASMPLKFWDEAFL 634
Query: 49 TACYLIYRLPSKDI 8
A YLI RLP K I
Sbjct: 635 AATYLINRLPRKVI 648
>gb|ACY72569.1| unknown [Oryza sativa Japonica Group]
Length = 1436
Score = 102 bits (255), Expect = 4e-20
Identities = 49/75 (65%), Positives = 57/75 (76%)
Frame = -1
Query: 229 EYHKLHSILAKTGIAHLVSCPHTHQQNGLVERKHRHVVEVALSLLAQSHMPIKF*DEAIQ 50
EY KL+S AK GI H VSCPHTHQQNG ERKHRH++EV LSLL+ + MP+KF DEA
Sbjct: 587 EYQKLNSFFAKIGIDHHVSCPHTHQQNGSAERKHRHIIEVGLSLLSYASMPLKFWDEAFV 646
Query: 49 TACYLIYRLPSKDIK 5
A YLI R+PSK I+
Sbjct: 647 AATYLINRVPSKTIQ 661
>ref|XP_004967136.1| PREDICTED: uncharacterized protein LOC101762311 [Setaria italica]
Length = 866
Score = 101 bits (251), Expect = 1e-19
Identities = 48/74 (64%), Positives = 56/74 (75%)
Frame = -1
Query: 229 EYHKLHSILAKTGIAHLVSCPHTHQQNGLVERKHRHVVEVALSLLAQSHMPIKF*DEAIQ 50
EY KL+S K GI+H VSCPHTHQQNG ERKHRH++EV L+LLA + MP+KF D+A
Sbjct: 499 EYEKLNSFFKKIGISHRVSCPHTHQQNGAAERKHRHIIEVGLALLANASMPLKFWDQAFL 558
Query: 49 TACYLIYRLPSKDI 8
TA YLI LPSK I
Sbjct: 559 TATYLINLLPSKVI 572
>gb|ABA98049.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1460
Score = 101 bits (251), Expect = 1e-19
Identities = 47/74 (63%), Positives = 56/74 (75%)
Frame = -1
Query: 229 EYHKLHSILAKTGIAHLVSCPHTHQQNGLVERKHRHVVEVALSLLAQSHMPIKF*DEAIQ 50
EY L+S +K GI H VSCPHTHQQNG ERKHRH+VE+ LSLL+ + MP+KF DEA Q
Sbjct: 581 EYQSLNSFFSKIGIVHHVSCPHTHQQNGSAERKHRHIVEIGLSLLSHASMPLKFWDEAFQ 640
Query: 49 TACYLIYRLPSKDI 8
A YLI R+PS+ I
Sbjct: 641 VATYLINRVPSRVI 654
>gb|ABA98286.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1478
Score = 101 bits (251), Expect = 1e-19
Identities = 47/74 (63%), Positives = 56/74 (75%)
Frame = -1
Query: 229 EYHKLHSILAKTGIAHLVSCPHTHQQNGLVERKHRHVVEVALSLLAQSHMPIKF*DEAIQ 50
EY L+S +K GI H VSCPHTHQQNG ERKHRH+VE+ LSLL+ + MP+KF DEA Q
Sbjct: 614 EYQSLNSFFSKIGIVHHVSCPHTHQQNGSAERKHRHIVEIGLSLLSHASMPLKFWDEAFQ 673
Query: 49 TACYLIYRLPSKDI 8
A YLI R+PS+ I
Sbjct: 674 AATYLINRVPSRVI 687
>gb|ABA97707.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1001
Score = 101 bits (251), Expect = 1e-19
Identities = 48/74 (64%), Positives = 55/74 (74%)
Frame = -1
Query: 229 EYHKLHSILAKTGIAHLVSCPHTHQQNGLVERKHRHVVEVALSLLAQSHMPIKF*DEAIQ 50
EY KL+S K GI+H VSCPH HQQNG ERKHRH+VEV L+LLA + MP+KF DEA
Sbjct: 326 EYEKLNSFFTKIGISHRVSCPHAHQQNGAAERKHRHIVEVGLALLAHASMPLKFWDEAFC 385
Query: 49 TACYLIYRLPSKDI 8
TA YLI R P+K I
Sbjct: 386 TATYLINRTPAKTI 399
>gb|AAN06870.1| Putative gag-pol polyprotein [Oryza sativa Japonica Group]
gi|108706314|gb|ABF94109.1| retrotransposon protein,
putative, Ty1-copia subclass [Oryza sativa Japonica
Group]
Length = 1247
Score = 100 bits (250), Expect = 2e-19
Identities = 48/75 (64%), Positives = 56/75 (74%)
Frame = -1
Query: 229 EYHKLHSILAKTGIAHLVSCPHTHQQNGLVERKHRHVVEVALSLLAQSHMPIKF*DEAIQ 50
EY KL+S K GI H VSCPHTHQQNG ERKHRH+VE+ L+LLA S MP+KF DEA
Sbjct: 385 EYEKLNSFFTKIGITHHVSCPHTHQQNGSAERKHRHIVEMGLALLAYSSMPLKFWDEAFT 444
Query: 49 TACYLIYRLPSKDIK 5
+A YLI R PS+ +K
Sbjct: 445 SAVYLINRTPSRLLK 459
>dbj|BAB90546.1| putative rice retrotransposon retrofit gag/pol polyprotein [Oryza
sativa Japonica Group]
Length = 1448
Score = 100 bits (249), Expect = 2e-19
Identities = 47/75 (62%), Positives = 57/75 (76%)
Frame = -1
Query: 229 EYHKLHSILAKTGIAHLVSCPHTHQQNGLVERKHRHVVEVALSLLAQSHMPIKF*DEAIQ 50
EY KL+S A+ GI H VSCPHTHQQNG ERKH+H++EV LSLL+ + MP+KF DEA
Sbjct: 590 EYQKLNSFFAQIGIDHHVSCPHTHQQNGSAERKHKHIIEVGLSLLSYASMPLKFWDEAFV 649
Query: 49 TACYLIYRLPSKDIK 5
A YLI R+PSK I+
Sbjct: 650 AATYLINRIPSKTIQ 664
>gb|ACV42639.1| gag/pol [Oryza sativa Japonica Group]
Length = 1448
Score = 100 bits (249), Expect = 2e-19
Identities = 47/75 (62%), Positives = 57/75 (76%)
Frame = -1
Query: 229 EYHKLHSILAKTGIAHLVSCPHTHQQNGLVERKHRHVVEVALSLLAQSHMPIKF*DEAIQ 50
EY KL+S A+ GI H VSCPHTHQQNG ERKH+H++EV LSLL+ + MP+KF DEA
Sbjct: 590 EYQKLNSFFAQIGIDHHVSCPHTHQQNGSAERKHKHIIEVGLSLLSYASMPLKFWDEAFV 649
Query: 49 TACYLIYRLPSKDIK 5
A YLI R+PSK I+
Sbjct: 650 AATYLINRIPSKTIQ 664
>gb|ABA98728.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1016
Score = 100 bits (249), Expect = 2e-19
Identities = 48/75 (64%), Positives = 56/75 (74%)
Frame = -1
Query: 229 EYHKLHSILAKTGIAHLVSCPHTHQQNGLVERKHRHVVEVALSLLAQSHMPIKF*DEAIQ 50
EY KLHS K GI+H VSCP+ HQQNG ERKHRH+VEV L+LLA + +P+KF DEA
Sbjct: 198 EYEKLHSFFTKIGISHHVSCPYAHQQNGSAERKHRHIVEVGLALLAHASVPLKFWDEAFL 257
Query: 49 TACYLIYRLPSKDIK 5
A YLI RLPSK I+
Sbjct: 258 AATYLINRLPSKVIQ 272
>gb|AAU90262.1| integrase core domain containing protein [Oryza sativa Japonica
Group] gi|108710062|gb|ABF97857.1| retrotransposon
protein, putative, Ty1-copia subclass, expressed [Oryza
sativa Japonica Group]
Length = 1021
Score = 100 bits (249), Expect = 2e-19
Identities = 49/75 (65%), Positives = 56/75 (74%)
Frame = -1
Query: 229 EYHKLHSILAKTGIAHLVSCPHTHQQNGLVERKHRHVVEVALSLLAQSHMPIKF*DEAIQ 50
EY KL++I K GI H VSCP+ HQQNG ERKHRH+VEV LSLLA + MP+KF DEA
Sbjct: 502 EYEKLNAIFTKIGITHHVSCPYAHQQNGSAERKHRHIVEVGLSLLAHASMPLKFWDEAFL 561
Query: 49 TACYLIYRLPSKDIK 5
TA YLI R PSK I+
Sbjct: 562 TATYLINRTPSKVIQ 576
>gb|AAP94600.1| putative copia-like retrotransposon Hopscotch polyprotein [Zea
mays]
Length = 969
Score = 100 bits (248), Expect = 3e-19
Identities = 47/76 (61%), Positives = 56/76 (73%)
Frame = -1
Query: 229 EYHKLHSILAKTGIAHLVSCPHTHQQNGLVERKHRHVVEVALSLLAQSHMPIKF*DEAIQ 50
EY +L++ K GI+HLVSCPH HQQNG ERKHRH+VEV LSLLA + MP+KF DEA
Sbjct: 434 EYQRLNTFFNKIGISHLVSCPHAHQQNGSAERKHRHIVEVGLSLLAHASMPLKFWDEAFL 493
Query: 49 TACYLIYRLPSKDIKL 2
A YLI R P+K + L
Sbjct: 494 AAAYLINRTPTKILNL 509
>gb|AAL66754.1|AF464738_5 putative copia-like retrotransposon Hopscotch polyprotein [Zea
mays]
Length = 1313
Score = 100 bits (248), Expect = 3e-19
Identities = 47/76 (61%), Positives = 56/76 (73%)
Frame = -1
Query: 229 EYHKLHSILAKTGIAHLVSCPHTHQQNGLVERKHRHVVEVALSLLAQSHMPIKF*DEAIQ 50
EY +L++ K GI+HLVSCPH HQQNG ERKHRH+VEV LSLLA + MP+KF DEA
Sbjct: 434 EYQRLNTFFNKIGISHLVSCPHAHQQNGSAERKHRHIVEVGLSLLAHASMPLKFWDEAFL 493
Query: 49 TACYLIYRLPSKDIKL 2
A YLI R P+K + L
Sbjct: 494 AAAYLINRTPTKILNL 509
>gb|AAT85031.1| putative polyprotein [Oryza sativa Japonica Group]
gi|108708884|gb|ABF96679.1| retrotransposon protein,
putative, Ty1-copia subclass [Oryza sativa Japonica
Group]
Length = 1437
Score = 100 bits (248), Expect = 3e-19
Identities = 48/72 (66%), Positives = 53/72 (73%)
Frame = -1
Query: 229 EYHKLHSILAKTGIAHLVSCPHTHQQNGLVERKHRHVVEVALSLLAQSHMPIKF*DEAIQ 50
EY KLHS K GI H VSCPHTHQQNG ERKHRH+VEV L+LLA S MP+KF EA
Sbjct: 585 EYQKLHSFFNKVGITHHVSCPHTHQQNGSAERKHRHIVEVGLALLAYSSMPLKFWGEAFL 644
Query: 49 TACYLIYRLPSK 14
+A YLI R PS+
Sbjct: 645 SAVYLINRTPSR 656
>gb|AAR88589.1| putative copia-like retrotransposon protein [Oryza sativa Japonica
Group]
Length = 1399
Score = 100 bits (248), Expect = 3e-19
Identities = 48/74 (64%), Positives = 57/74 (77%)
Frame = -1
Query: 229 EYHKLHSILAKTGIAHLVSCPHTHQQNGLVERKHRHVVEVALSLLAQSHMPIKF*DEAIQ 50
EY KL++ AK GI+H VSCP+ HQQNG ERKHRH++EVAL+LLA + MPIKF DEA+
Sbjct: 549 EYQKLNTFFAKIGISHHVSCPYAHQQNGSAERKHRHLIEVALTLLAHASMPIKFWDEAVL 608
Query: 49 TACYLIYRLPSKDI 8
A YLI R PSK I
Sbjct: 609 AAAYLINRTPSKVI 622