BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Catharanthus23_contig00035564
         (302 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EOY26277.1| Pseudouridine synthase family protein [Theobroma ...   123   3e-26
ref|XP_002267010.1| PREDICTED: RNA pseudourine synthase 3, mitoc...   121   8e-26
emb|CBI18448.3| unnamed protein product [Vitis vinifera]              121   8e-26
ref|XP_006353749.1| PREDICTED: RNA pseudouridine synthase 3, mit...   120   2e-25
gb|AAC83020.1| Contains similarity to gi|1786244 hypothetical 24...   119   4e-25
ref|NP_178012.2| RNA pseudourine synthase 3 [Arabidopsis thalian...   119   4e-25
ref|XP_006389943.1| hypothetical protein EUTSA_v10018480mg [Eutr...   118   7e-25
ref|XP_002526838.1| ribosomal pseudouridine synthase, putative [...   117   2e-24
gb|EXC41018.1| RNA pseudourine synthase 3 [Morus notabilis]           116   3e-24
gb|EMJ11188.1| hypothetical protein PRUPE_ppa005240mg [Prunus pe...   116   3e-24
ref|XP_006468112.1| PREDICTED: RNA pseudouridine synthase 3, mit...   116   4e-24
ref|XP_002887761.1| hypothetical protein ARALYDRAFT_477057 [Arab...   116   4e-24
ref|XP_006436406.1| hypothetical protein CICLE_v10031422mg [Citr...   114   2e-23
ref|XP_004243668.1| PREDICTED: RNA pseudourine synthase 3, mitoc...   114   2e-23
gb|EXC58952.1| RNA pseudourine synthase 3 [Morus notabilis]           113   3e-23
ref|XP_006300371.1| hypothetical protein CARUB_v10022381mg [Caps...   113   3e-23
ref|XP_006385075.1| hypothetical protein POPTR_0004s23670g [Popu...   112   5e-23
ref|XP_002328725.1| predicted protein [Populus trichocarpa]           112   5e-23
ref|XP_004300876.1| PREDICTED: RNA pseudourine synthase 3, mitoc...   110   3e-22
ref|XP_006601251.1| PREDICTED: RNA pseudouridine synthase 3, mit...   108   6e-22

>gb|EOY26277.1| Pseudouridine synthase family protein [Theobroma cacao]
          Length = 471

 Score =  123 bits (308), Expect = 3e-26
 Identities = 58/75 (77%), Positives = 65/75 (86%), Gaps = 1/75 (1%)
 Frame = +3

Query: 21  VVRVTNHIAHLGHPKRGPKPRQLLSLPPFPGHPLPGKN-SAYGRVTAISWLKYYFDDIPG 197
           V+RV+N +A+LG PK+GPKPRQLLSLPPFPG+PLPGKN     RVTAISWLKYYFD+IP 
Sbjct: 31  VLRVSNSVAYLGAPKQGPKPRQLLSLPPFPGYPLPGKNPGGTARVTAISWLKYYFDEIPD 90

Query: 198 DVIQSHFNKGLVQME 242
             IQSHFNKGLVQME
Sbjct: 91  SAIQSHFNKGLVQME 105


>ref|XP_002267010.1| PREDICTED: RNA pseudourine synthase 3, mitochondrial-like [Vitis
           vinifera]
          Length = 479

 Score =  121 bits (304), Expect = 8e-26
 Identities = 64/108 (59%), Positives = 74/108 (68%), Gaps = 11/108 (10%)
 Frame = +3

Query: 6   IQPPR------VVRVTNHIAHLGHPKRGPKPRQLLSLPPFPGHPLPGK-----NSAYGRV 152
           I PPR      V+RV+N++A LG PK GPKPRQLLSLPPFP HPLPGK     +     V
Sbjct: 22  IAPPRPASAAPVIRVSNNVAQLGSPKEGPKPRQLLSLPPFPAHPLPGKSLVNVSGLPTHV 81

Query: 153 TAISWLKYYFDDIPGDVIQSHFNKGLVQMEFLDSVASSATKGMETKSL 296
           TAISW+KYYFD+IPG V+QSHFNKGLV ME  +   SS  K  + K L
Sbjct: 82  TAISWIKYYFDEIPGSVVQSHFNKGLVHMERSNLDDSSLEKEGQIKPL 129


>emb|CBI18448.3| unnamed protein product [Vitis vinifera]
          Length = 481

 Score =  121 bits (304), Expect = 8e-26
 Identities = 64/108 (59%), Positives = 74/108 (68%), Gaps = 11/108 (10%)
 Frame = +3

Query: 6   IQPPR------VVRVTNHIAHLGHPKRGPKPRQLLSLPPFPGHPLPGK-----NSAYGRV 152
           I PPR      V+RV+N++A LG PK GPKPRQLLSLPPFP HPLPGK     +     V
Sbjct: 22  IAPPRPASAAPVIRVSNNVAQLGSPKEGPKPRQLLSLPPFPAHPLPGKSLVNVSGLPTHV 81

Query: 153 TAISWLKYYFDDIPGDVIQSHFNKGLVQMEFLDSVASSATKGMETKSL 296
           TAISW+KYYFD+IPG V+QSHFNKGLV ME  +   SS  K  + K L
Sbjct: 82  TAISWIKYYFDEIPGSVVQSHFNKGLVHMERSNLDDSSLEKEGQIKPL 129


>ref|XP_006353749.1| PREDICTED: RNA pseudouridine synthase 3, mitochondrial-like isoform
           X1 [Solanum tuberosum] gi|565374397|ref|XP_006353750.1|
           PREDICTED: RNA pseudouridine synthase 3,
           mitochondrial-like isoform X2 [Solanum tuberosum]
           gi|565374399|ref|XP_006353751.1| PREDICTED: RNA
           pseudouridine synthase 3, mitochondrial-like isoform X3
           [Solanum tuberosum]
          Length = 475

 Score =  120 bits (301), Expect = 2e-25
 Identities = 57/81 (70%), Positives = 64/81 (79%), Gaps = 6/81 (7%)
 Frame = +3

Query: 21  VVRVTNHIAHLGHPKRGPKPRQLLSLPPFPGHPLPGKNSAYG------RVTAISWLKYYF 182
           V+RV+N+I HLG  K G KP QLLSLPPFPGHPLPGK  A G       VTAISW+KYYF
Sbjct: 34  VIRVSNNITHLGRQKEGAKPSQLLSLPPFPGHPLPGKKVATGPDQPSCHVTAISWIKYYF 93

Query: 183 DDIPGDVIQSHFNKGLVQMEF 245
           D+IPG VIQ+HFNKGLVQ+EF
Sbjct: 94  DEIPGSVIQTHFNKGLVQLEF 114


>gb|AAC83020.1| Contains similarity to gi|1786244 hypothetical 24.9 kD protein in
           surA-hepA intergenic region yab0 from Escherichia coli
           genome gb|AE000116, and to hypothetical YABO family
           PF|00849 [Arabidopsis thaliana]
          Length = 491

 Score =  119 bits (298), Expect = 4e-25
 Identities = 56/86 (65%), Positives = 67/86 (77%), Gaps = 8/86 (9%)
 Frame = +3

Query: 12  PPRVVRVTNHIAHLGHPKRGPKPRQLLSLPPFPGHPLPGKNS--------AYGRVTAISW 167
           P  V+RVTN++AHLG PK+GP PRQL+SLPPFPGHPLPGKN+        + G VTAISW
Sbjct: 27  PSSVIRVTNNVAHLGPPKQGPLPRQLISLPPFPGHPLPGKNAGADGDDGDSGGHVTAISW 86

Query: 168 LKYYFDDIPGDVIQSHFNKGLVQMEF 245
           +KYYF++I    IQ+HF KGLVQMEF
Sbjct: 87  VKYYFEEIYDKAIQTHFTKGLVQMEF 112


>ref|NP_178012.2| RNA pseudourine synthase 3 [Arabidopsis thaliana]
           gi|75110951|sp|Q5XET6.1|PUS3_ARATH RecName: Full=RNA
           pseudouridine synthase 3, mitochondrial; AltName:
           Full=RNA pseudouridylate synthase 3; AltName:
           Full=RNA-uridine isomerase 3; Flags: Precursor
           gi|53850479|gb|AAU95416.1| At1g78910 [Arabidopsis
           thaliana] gi|56790228|gb|AAW30031.1| At1g78910
           [Arabidopsis thaliana] gi|332198052|gb|AEE36173.1| RNA
           pseudourine synthase 3 [Arabidopsis thaliana]
          Length = 478

 Score =  119 bits (298), Expect = 4e-25
 Identities = 56/86 (65%), Positives = 67/86 (77%), Gaps = 8/86 (9%)
 Frame = +3

Query: 12  PPRVVRVTNHIAHLGHPKRGPKPRQLLSLPPFPGHPLPGKNS--------AYGRVTAISW 167
           P  V+RVTN++AHLG PK+GP PRQL+SLPPFPGHPLPGKN+        + G VTAISW
Sbjct: 27  PSSVIRVTNNVAHLGPPKQGPLPRQLISLPPFPGHPLPGKNAGADGDDGDSGGHVTAISW 86

Query: 168 LKYYFDDIPGDVIQSHFNKGLVQMEF 245
           +KYYF++I    IQ+HF KGLVQMEF
Sbjct: 87  VKYYFEEIYDKAIQTHFTKGLVQMEF 112


>ref|XP_006389943.1| hypothetical protein EUTSA_v10018480mg [Eutrema salsugineum]
           gi|557086377|gb|ESQ27229.1| hypothetical protein
           EUTSA_v10018480mg [Eutrema salsugineum]
          Length = 478

 Score =  118 bits (296), Expect = 7e-25
 Identities = 56/81 (69%), Positives = 64/81 (79%), Gaps = 3/81 (3%)
 Frame = +3

Query: 12  PPRVVRVTNHIAHLGHPKRGPKPRQLLSLPPFPGHPLPGKNSAY---GRVTAISWLKYYF 182
           P  V+RVTN+IA LG PK+GP PRQL+SLPPFPGHPLPGKN+     G VTAISW+KYY 
Sbjct: 32  PSTVIRVTNNIAQLGPPKKGPLPRQLMSLPPFPGHPLPGKNAGVDEDGHVTAISWVKYYL 91

Query: 183 DDIPGDVIQSHFNKGLVQMEF 245
           ++I    IQSHF KGLVQMEF
Sbjct: 92  EEIHDKAIQSHFTKGLVQMEF 112


>ref|XP_002526838.1| ribosomal pseudouridine synthase, putative [Ricinus communis]
           gi|223533842|gb|EEF35573.1| ribosomal pseudouridine
           synthase, putative [Ricinus communis]
          Length = 468

 Score =  117 bits (292), Expect = 2e-24
 Identities = 53/74 (71%), Positives = 61/74 (82%)
 Frame = +3

Query: 21  VVRVTNHIAHLGHPKRGPKPRQLLSLPPFPGHPLPGKNSAYGRVTAISWLKYYFDDIPGD 200
           V+RV+N++AHLG PK GPKPRQLLSLPPFPG PLPG+NS    VTAISW+KYYFD+I   
Sbjct: 31  VIRVSNNVAHLGSPKDGPKPRQLLSLPPFPGLPLPGRNSMASHVTAISWVKYYFDEILDS 90

Query: 201 VIQSHFNKGLVQME 242
            IQSHFNKGL  +E
Sbjct: 91  AIQSHFNKGLAHIE 104


>gb|EXC41018.1| RNA pseudourine synthase 3 [Morus notabilis]
          Length = 449

 Score =  116 bits (291), Expect = 3e-24
 Identities = 58/85 (68%), Positives = 68/85 (80%), Gaps = 6/85 (7%)
 Frame = +3

Query: 6   IQPPR------VVRVTNHIAHLGHPKRGPKPRQLLSLPPFPGHPLPGKNSAYGRVTAISW 167
           I+PP       V+RV+N++A LG PK GPKPRQLLSLPPFPG PLPGKNS   RVTAISW
Sbjct: 12  IRPPAAAEAGPVIRVSNNVAQLGGPKEGPKPRQLLSLPPFPGLPLPGKNSE--RVTAISW 69

Query: 168 LKYYFDDIPGDVIQSHFNKGLVQME 242
           +KYYF+++  +VIQSHFNK LVQME
Sbjct: 70  VKYYFEEVHDNVIQSHFNKSLVQME 94


>gb|EMJ11188.1| hypothetical protein PRUPE_ppa005240mg [Prunus persica]
          Length = 471

 Score =  116 bits (291), Expect = 3e-24
 Identities = 55/78 (70%), Positives = 62/78 (79%), Gaps = 4/78 (5%)
 Frame = +3

Query: 21  VVRVTNHIAHLGHPKRGPKPRQLLSLPPFPGHPLPGKNSAYG----RVTAISWLKYYFDD 188
           ++RV+NH+A LG PK GPKPRQLLSLPPFPGHPLPGK S  G    RVTA+SW+KYYFD 
Sbjct: 32  LIRVSNHVARLGPPKEGPKPRQLLSLPPFPGHPLPGKRSHEGGVVSRVTAVSWVKYYFDG 91

Query: 189 IPGDVIQSHFNKGLVQME 242
           I    IQSHF +GLVQME
Sbjct: 92  IYDSTIQSHFKQGLVQME 109


>ref|XP_006468112.1| PREDICTED: RNA pseudouridine synthase 3, mitochondrial-like [Citrus
           sinensis]
          Length = 471

 Score =  116 bits (290), Expect = 4e-24
 Identities = 58/83 (69%), Positives = 66/83 (79%), Gaps = 4/83 (4%)
 Frame = +3

Query: 6   IQPPR--VVRVTNH-IAHLGHPKRGPKPRQLLSLPPFPGHPLPGKN-SAYGRVTAISWLK 173
           I PPR  V+RV+   +AHLG PK GPKPRQLLSLPPFPGH LPGK+    G VTA+SW+K
Sbjct: 21  ISPPRPAVIRVSEKKVAHLGPPKAGPKPRQLLSLPPFPGHNLPGKHWGRQGHVTAVSWVK 80

Query: 174 YYFDDIPGDVIQSHFNKGLVQME 242
           YYFD++   VIQSHFNKGLVQME
Sbjct: 81  YYFDEVQDSVIQSHFNKGLVQME 103


>ref|XP_002887761.1| hypothetical protein ARALYDRAFT_477057 [Arabidopsis lyrata subsp.
           lyrata] gi|297333602|gb|EFH64020.1| hypothetical protein
           ARALYDRAFT_477057 [Arabidopsis lyrata subsp. lyrata]
          Length = 477

 Score =  116 bits (290), Expect = 4e-24
 Identities = 55/85 (64%), Positives = 66/85 (77%), Gaps = 7/85 (8%)
 Frame = +3

Query: 12  PPRVVRVTNHIAHLGHPKRGPKPRQLLSLPPFPGHPLPGKNSAY-------GRVTAISWL 170
           P  V+RVTN+IAHLG PK+GP PRQL+SLPPFPG+PLPGKN+         G VTAISW+
Sbjct: 27  PSSVLRVTNNIAHLGPPKQGPLPRQLISLPPFPGYPLPGKNAGVDGDEGDSGHVTAISWV 86

Query: 171 KYYFDDIPGDVIQSHFNKGLVQMEF 245
           K+YF++I    IQ+HF KGLVQMEF
Sbjct: 87  KFYFEEIHDKAIQTHFTKGLVQMEF 111


>ref|XP_006436406.1| hypothetical protein CICLE_v10031422mg [Citrus clementina]
           gi|557538602|gb|ESR49646.1| hypothetical protein
           CICLE_v10031422mg [Citrus clementina]
          Length = 471

 Score =  114 bits (284), Expect = 2e-23
 Identities = 59/85 (69%), Positives = 68/85 (80%), Gaps = 6/85 (7%)
 Frame = +3

Query: 6   IQPPR--VVRVTNH-IAHLGHPKRGPKPRQLLSLPPFPGHPLPGKNSAYGR---VTAISW 167
           I PPR  V+RV+   +AHLG PK GPKPRQLLSLPPFPGH LPGK+  +GR   VTA+SW
Sbjct: 21  ISPPRPAVIRVSEKKVAHLGPPKAGPKPRQLLSLPPFPGHNLPGKH--WGRQCHVTAVSW 78

Query: 168 LKYYFDDIPGDVIQSHFNKGLVQME 242
           +KYYFD++   VIQSHFNKGLVQME
Sbjct: 79  VKYYFDEVQDSVIQSHFNKGLVQME 103


>ref|XP_004243668.1| PREDICTED: RNA pseudourine synthase 3, mitochondrial-like [Solanum
           lycopersicum]
          Length = 475

 Score =  114 bits (284), Expect = 2e-23
 Identities = 56/80 (70%), Positives = 62/80 (77%), Gaps = 6/80 (7%)
 Frame = +3

Query: 21  VVRVTNHIAHLGHPKRGPKPRQLLSLPPFPGHPLPGKNSAYG------RVTAISWLKYYF 182
           V+RV+N+I HLG  K G KP QLLSLPPFPG PLPGK  A G       VTAISW+KYYF
Sbjct: 34  VIRVSNNITHLGRQKDGVKPSQLLSLPPFPGCPLPGKKVATGPDQPSCHVTAISWIKYYF 93

Query: 183 DDIPGDVIQSHFNKGLVQME 242
           D+IPG VIQSHFNKGLVQ+E
Sbjct: 94  DEIPGSVIQSHFNKGLVQLE 113


>gb|EXC58952.1| RNA pseudourine synthase 3 [Morus notabilis]
          Length = 449

 Score =  113 bits (282), Expect = 3e-23
 Identities = 56/85 (65%), Positives = 67/85 (78%), Gaps = 6/85 (7%)
 Frame = +3

Query: 6   IQPPR------VVRVTNHIAHLGHPKRGPKPRQLLSLPPFPGHPLPGKNSAYGRVTAISW 167
           I+PP       V+RV+N++A LG PK GPKPRQLLSLPPFPG PLPGK S   RVTAI+W
Sbjct: 12  IRPPAAAEAGPVIRVSNNVAQLGGPKEGPKPRQLLSLPPFPGLPLPGKKSE--RVTAITW 69

Query: 168 LKYYFDDIPGDVIQSHFNKGLVQME 242
           +KYYF+++  +VIQSHFNK LVQME
Sbjct: 70  VKYYFEEVHDNVIQSHFNKSLVQME 94


>ref|XP_006300371.1| hypothetical protein CARUB_v10022381mg [Capsella rubella]
           gi|482569081|gb|EOA33269.1| hypothetical protein
           CARUB_v10022381mg [Capsella rubella]
          Length = 478

 Score =  113 bits (282), Expect = 3e-23
 Identities = 54/86 (62%), Positives = 65/86 (75%), Gaps = 8/86 (9%)
 Frame = +3

Query: 12  PPRVVRVTNHIAHLGHPKRGPKPRQLLSLPPFPGHPLPGKNS--------AYGRVTAISW 167
           P  V+RVTN++AHLG PK+GP PRQL+SLPPFPG PLPGKN+        +   VTAISW
Sbjct: 27  PSTVIRVTNNVAHLGPPKQGPLPRQLISLPPFPGPPLPGKNAVDNGDDGDSGDHVTAISW 86

Query: 168 LKYYFDDIPGDVIQSHFNKGLVQMEF 245
           +KYYF++I    IQ+HF KGLVQMEF
Sbjct: 87  VKYYFEEIHDKAIQTHFTKGLVQMEF 112


>ref|XP_006385075.1| hypothetical protein POPTR_0004s23670g [Populus trichocarpa]
           gi|550341843|gb|ERP62872.1| hypothetical protein
           POPTR_0004s23670g [Populus trichocarpa]
          Length = 462

 Score =  112 bits (280), Expect = 5e-23
 Identities = 59/91 (64%), Positives = 67/91 (73%), Gaps = 2/91 (2%)
 Frame = +3

Query: 15  PRVVRVT-NHIAHLGHPKRGPKPRQLLSLPPFPGHPLPGKNSAYG-RVTAISWLKYYFDD 188
           P+VVRVT  ++A LG PK GPKPRQLLSLPPFPG PLPGK S     VTAISW+KYYFD+
Sbjct: 20  PQVVRVTAKNVAKLGSPKEGPKPRQLLSLPPFPGFPLPGKKSLNACHVTAISWVKYYFDE 79

Query: 189 IPGDVIQSHFNKGLVQMEFLDSVASSATKGM 281
           I   VIQSHFNK LVQ+E   S  S   +G+
Sbjct: 80  IQDSVIQSHFNKSLVQIECPSSSDSVEMEGL 110


>ref|XP_002328725.1| predicted protein [Populus trichocarpa]
          Length = 116

 Score =  112 bits (280), Expect = 5e-23
 Identities = 59/91 (64%), Positives = 67/91 (73%), Gaps = 2/91 (2%)
 Frame = +3

Query: 15  PRVVRVT-NHIAHLGHPKRGPKPRQLLSLPPFPGHPLPGKNSAYG-RVTAISWLKYYFDD 188
           P+VVRVT  ++A LG PK GPKPRQLLSLPPFPG PLPGK S     VTAISW+KYYFD+
Sbjct: 20  PQVVRVTAKNVAKLGSPKEGPKPRQLLSLPPFPGFPLPGKKSLNACHVTAISWVKYYFDE 79

Query: 189 IPGDVIQSHFNKGLVQMEFLDSVASSATKGM 281
           I   VIQSHFNK LVQ+E   S  S   +G+
Sbjct: 80  IQDSVIQSHFNKSLVQIECPSSSDSVEMEGL 110


>ref|XP_004300876.1| PREDICTED: RNA pseudourine synthase 3, mitochondrial-like [Fragaria
           vesca subsp. vesca]
          Length = 469

 Score =  110 bits (274), Expect = 3e-22
 Identities = 56/93 (60%), Positives = 65/93 (69%), Gaps = 5/93 (5%)
 Frame = +3

Query: 12  PPRVVRVTNHIAHLGHPKRGPKPRQLLSLPPFP-GHPLPGKNS----AYGRVTAISWLKY 176
           PP ++RV+NH+A LG PK GPKPRQLLSLPPFP G  LPGK S    A   VTA+SWL+Y
Sbjct: 31  PPPLIRVSNHVAKLGPPKAGPKPRQLLSLPPFPAGRHLPGKKSYHDGAVSHVTAVSWLRY 90

Query: 177 YFDDIPGDVIQSHFNKGLVQMEFLDSVASSATK 275
           YF +I    I+SHFNKGLVQME   S+     K
Sbjct: 91  YFHEIDDAAIRSHFNKGLVQMECESSIGKHMRK 123


>ref|XP_006601251.1| PREDICTED: RNA pseudouridine synthase 3, mitochondrial-like isoform
           X2 [Glycine max]
          Length = 449

 Score =  108 bits (271), Expect = 6e-22
 Identities = 57/94 (60%), Positives = 66/94 (70%), Gaps = 11/94 (11%)
 Frame = +3

Query: 6   IQPPR------VVRVTNHIAHLGHPKRGPKPRQLLSLPPFPGHPLPGKNSAYGR-----V 152
           IQPPR      V+ V+N+IA L  PK GPKPRQLLSLPPFPGHPLP K+S  G      V
Sbjct: 24  IQPPRPVSVEPVISVSNNIARLDAPKEGPKPRQLLSLPPFPGHPLPDKSSISGSRQRDYV 83

Query: 153 TAISWLKYYFDDIPGDVIQSHFNKGLVQMEFLDS 254
           TA++W+KYYF    G VI+SHF +GLVQME  DS
Sbjct: 84  TAVNWIKYYFKGTWGSVIESHFREGLVQMEADDS 117