BLASTX nr result
ID: Catharanthus23_contig00035437
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Catharanthus23_contig00035437
(205 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAK38381.1|AC079028_5 polyprotein, putative [Arabidopsis thal... 55 7e-13
dbj|BAA96887.1| copia-like retroelement pol polyprotein [Arabido... 54 6e-12
gb|AAF19226.1|AC007505_2 Highly similar to Ta1-3 polyprotein [Ar... 50 5e-11
dbj|BAB09923.1| copia-like retrotransposable element [Arabidopsi... 51 6e-11
emb|CAA20201.1| putative transposable element [Arabidopsis thali... 52 6e-11
emb|CAA31653.1| polyprotein [Arabidopsis thaliana] 50 6e-11
emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis] 52 1e-10
gb|AAD23690.1| putative retroelement pol polyprotein [Arabidopsi... 55 1e-10
gb|AAD32759.1| putative retroelement pol polyprotein [Arabidopsi... 53 2e-10
gb|AAD29774.1|AF074021_6 putative polyprotein [Arabidopsis thali... 54 7e-10
gb|AAD19773.1| putative retroelement pol polyprotein [Arabidopsi... 48 3e-09
pir||S23319 hypothetical protein 2 - Arabidopsis thaliana retrot... 47 3e-09
emb|CAA37919.1| unnamed protein product [Arabidopsis thaliana] 47 3e-09
gb|AAC62132.1| copia-like retroelement pol polyprotein [Arabidop... 50 4e-09
gb|AAC28238.1| contains similarity to reverse trancriptase (Pfam... 52 5e-09
emb|CAE03833.3| OSJNBb0013J13.10 [Oryza sativa Japonica Group] 48 5e-09
emb|CAB40039.1| putative retrotransposon [Arabidopsis thaliana] ... 50 9e-09
gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subc... 47 1e-08
emb|CAN61630.1| hypothetical protein VITISV_003191 [Vitis vinifera] 44 1e-08
gb|AAK52561.1|AC079853_14 Putative retroelement pol polyprotein ... 46 2e-08
>gb|AAK38381.1|AC079028_5 polyprotein, putative [Arabidopsis thaliana]
Length = 855
Score = 55.1 bits (131), Expect(2) = 7e-13
Identities = 25/39 (64%), Positives = 28/39 (71%)
Frame = -3
Query: 203 LVENQTDKKLKVLRTDNSLKFCNKNFDDLCAKCNITRQK 87
LVENQTDK++K LRTDN L+FCN FD C K I R K
Sbjct: 234 LVENQTDKRVKCLRTDNGLEFCNIKFDSYCKKYGIERHK 272
Score = 43.9 bits (102), Expect(2) = 7e-13
Identities = 20/28 (71%), Positives = 23/28 (82%)
Frame = -2
Query: 90 KTVSYNPQ*NTVAERMNRTVMDKVTCLI 7
KT +Y PQ N VAERMNRTVM+KV CL+
Sbjct: 272 KTCTYTPQQNGVAERMNRTVMEKVRCLL 299
>dbj|BAA96887.1| copia-like retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1140
Score = 54.3 bits (129), Expect(2) = 6e-12
Identities = 24/39 (61%), Positives = 29/39 (74%)
Frame = -3
Query: 203 LVENQTDKKLKVLRTDNSLKFCNKNFDDLCAKCNITRQK 87
LVENQ +KK+KVLRTDN L+FCN FD+ C K I R +
Sbjct: 528 LVENQVNKKIKVLRTDNGLEFCNLKFDEYCKKNGIERHR 566
Score = 41.6 bits (96), Expect(2) = 6e-12
Identities = 18/28 (64%), Positives = 23/28 (82%)
Frame = -2
Query: 90 KTVSYNPQ*NTVAERMNRTVMDKVTCLI 7
+T +Y PQ N VAERMNRT+M+KV CL+
Sbjct: 566 RTCTYTPQQNGVAERMNRTLMEKVRCLL 593
>gb|AAF19226.1|AC007505_2 Highly similar to Ta1-3 polyprotein [Arabidopsis thaliana]
Length = 1356
Score = 50.4 bits (119), Expect(2) = 5e-11
Identities = 22/39 (56%), Positives = 27/39 (69%)
Frame = -3
Query: 203 LVENQTDKKLKVLRTDNSLKFCNKNFDDLCAKCNITRQK 87
LVENQ +KK+K LRTDN L+FCN FD C + I R +
Sbjct: 551 LVENQVNKKVKCLRTDNGLEFCNSRFDSYCKEHGIERHR 589
Score = 42.4 bits (98), Expect(2) = 5e-11
Identities = 18/28 (64%), Positives = 23/28 (82%)
Frame = -2
Query: 90 KTVSYNPQ*NTVAERMNRTVMDKVTCLI 7
+T +Y PQ N VAERMNRT+M+KV CL+
Sbjct: 589 RTCTYTPQQNGVAERMNRTIMEKVRCLL 616
>dbj|BAB09923.1| copia-like retrotransposable element [Arabidopsis thaliana]
Length = 1342
Score = 51.2 bits (121), Expect(2) = 6e-11
Identities = 21/38 (55%), Positives = 27/38 (71%)
Frame = -3
Query: 200 VENQTDKKLKVLRTDNSLKFCNKNFDDLCAKCNITRQK 87
+ENQ DKKLK+L TDN L+FCN+ FD C K + R +
Sbjct: 540 IENQQDKKLKILITDNGLEFCNQEFDSFCRKEGVIRHR 577
Score = 41.2 bits (95), Expect(2) = 6e-11
Identities = 17/28 (60%), Positives = 23/28 (82%)
Frame = -2
Query: 90 KTVSYNPQ*NTVAERMNRTVMDKVTCLI 7
+T +Y PQ N VAERMNRT+M+KV C++
Sbjct: 577 RTCAYTPQQNGVAERMNRTIMNKVRCML 604
>emb|CAA20201.1| putative transposable element [Arabidopsis thaliana]
gi|7268932|emb|CAB79135.1| putative transposable element
[Arabidopsis thaliana]
Length = 1308
Score = 52.4 bits (124), Expect(2) = 6e-11
Identities = 22/39 (56%), Positives = 29/39 (74%)
Frame = -3
Query: 203 LVENQTDKKLKVLRTDNSLKFCNKNFDDLCAKCNITRQK 87
LVENQ +KK+K+LRTDN L+FCN FD+ C + I R +
Sbjct: 542 LVENQVNKKVKILRTDNGLEFCNLKFDEFCKQNGIERHR 580
Score = 40.0 bits (92), Expect(2) = 6e-11
Identities = 17/28 (60%), Positives = 23/28 (82%)
Frame = -2
Query: 90 KTVSYNPQ*NTVAERMNRTVMDKVTCLI 7
+T +Y PQ N VA+RMNRT+M+KV CL+
Sbjct: 580 RTCTYTPQQNGVAKRMNRTLMEKVRCLL 607
>emb|CAA31653.1| polyprotein [Arabidopsis thaliana]
Length = 1291
Score = 49.7 bits (117), Expect(2) = 6e-11
Identities = 23/39 (58%), Positives = 27/39 (69%)
Frame = -3
Query: 203 LVENQTDKKLKVLRTDNSLKFCNKNFDDLCAKCNITRQK 87
LVENQ +KK+K LRTDN L+FCN FD C + I R K
Sbjct: 561 LVENQQNKKVKCLRTDNGLEFCNLKFDAYCKEHGIERHK 599
Score = 42.7 bits (99), Expect(2) = 6e-11
Identities = 18/28 (64%), Positives = 23/28 (82%)
Frame = -2
Query: 90 KTVSYNPQ*NTVAERMNRTVMDKVTCLI 7
KT +Y PQ N VAERMNRT+M+KV C++
Sbjct: 599 KTCTYTPQQNGVAERMNRTIMEKVRCML 626
>emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis]
Length = 1334
Score = 51.6 bits (122), Expect(2) = 1e-10
Identities = 24/39 (61%), Positives = 29/39 (74%)
Frame = -3
Query: 203 LVENQTDKKLKVLRTDNSLKFCNKNFDDLCAKCNITRQK 87
LVENQ+D KLK LRTDN L+FC+K F++ C K I R K
Sbjct: 536 LVENQSDFKLKCLRTDNGLEFCSKVFEEYCQKHGIKRHK 574
Score = 40.0 bits (92), Expect(2) = 1e-10
Identities = 16/30 (53%), Positives = 24/30 (80%)
Frame = -2
Query: 90 KTVSYNPQ*NTVAERMNRTVMDKVTCLILS 1
KTV + PQ N +AERMNRT++DK C++++
Sbjct: 574 KTVRFTPQQNGLAERMNRTLVDKTRCMLIN 603
>gb|AAD23690.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1333
Score = 54.7 bits (130), Expect(2) = 1e-10
Identities = 22/35 (62%), Positives = 30/35 (85%)
Frame = -3
Query: 203 LVENQTDKKLKVLRTDNSLKFCNKNFDDLCAKCNI 99
LVENQTDK++K LRTDN L+FCN++FD+ C++ I
Sbjct: 530 LVENQTDKRIKTLRTDNGLEFCNRSFDEFCSQKGI 564
Score = 37.0 bits (84), Expect(2) = 1e-10
Identities = 16/28 (57%), Positives = 22/28 (78%)
Frame = -2
Query: 90 KTVSYNPQ*NTVAERMNRTVMDKVTCLI 7
+T +Y PQ N VAERMNRT+M+KV ++
Sbjct: 568 RTCAYTPQQNGVAERMNRTLMEKVRSML 595
>gb|AAD32759.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1356
Score = 53.1 bits (126), Expect(2) = 2e-10
Identities = 23/39 (58%), Positives = 28/39 (71%)
Frame = -3
Query: 203 LVENQTDKKLKVLRTDNSLKFCNKNFDDLCAKCNITRQK 87
LVENQTD+++K LRTDN L+FCNK FD C I R +
Sbjct: 552 LVENQTDRRVKTLRTDNGLEFCNKLFDGFCESIGIHRHR 590
Score = 37.7 bits (86), Expect(2) = 2e-10
Identities = 16/28 (57%), Positives = 22/28 (78%)
Frame = -2
Query: 90 KTVSYNPQ*NTVAERMNRTVMDKVTCLI 7
+T +Y PQ N VAERMNRT+M+KV ++
Sbjct: 590 RTCAYTPQQNGVAERMNRTIMEKVRSML 617
>gb|AAD29774.1|AF074021_6 putative polyprotein [Arabidopsis thaliana]
gi|7267218|emb|CAB80825.1| putative polyprotein
[Arabidopsis thaliana]
Length = 922
Score = 54.3 bits (129), Expect(2) = 7e-10
Identities = 24/39 (61%), Positives = 29/39 (74%)
Frame = -3
Query: 203 LVENQTDKKLKVLRTDNSLKFCNKNFDDLCAKCNITRQK 87
LVENQ +KK+KVLRTDN L+FCN FD+ C K I R +
Sbjct: 373 LVENQVNKKIKVLRTDNGLEFCNLKFDEYCKKNGIERHR 411
Score = 34.7 bits (78), Expect(2) = 7e-10
Identities = 15/23 (65%), Positives = 19/23 (82%)
Frame = -2
Query: 90 KTVSYNPQ*NTVAERMNRTVMDK 22
+T +Y PQ N VAERMNRT+M+K
Sbjct: 411 RTCTYTPQQNGVAERMNRTLMEK 433
>gb|AAD19773.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1335
Score = 47.8 bits (112), Expect(2) = 3e-09
Identities = 20/39 (51%), Positives = 28/39 (71%)
Frame = -3
Query: 203 LVENQTDKKLKVLRTDNSLKFCNKNFDDLCAKCNITRQK 87
+VENQ+D+K+K LRTDN L++CN F+ C + I R K
Sbjct: 528 MVENQSDRKVKKLRTDNGLEYCNHYFEKFCKEEGIVRHK 566
Score = 38.9 bits (89), Expect(2) = 3e-09
Identities = 16/28 (57%), Positives = 22/28 (78%)
Frame = -2
Query: 90 KTVSYNPQ*NTVAERMNRTVMDKVTCLI 7
KT +Y PQ N +AER+NRT+MDKV ++
Sbjct: 566 KTCAYTPQQNGIAERLNRTIMDKVRSML 593
>pir||S23319 hypothetical protein 2 - Arabidopsis thaliana retrotransposon Ta1-2
(strain Landsberg) (fragment) gi|16384|emb|CAA37924.1|
unnamed protein product [Arabidopsis thaliana]
Length = 1084
Score = 47.0 bits (110), Expect(2) = 3e-09
Identities = 22/37 (59%), Positives = 25/37 (67%)
Frame = -3
Query: 203 LVENQTDKKLKVLRTDNSLKFCNKNFDDLCAKCNITR 93
LVENQ +KK+K LRTDN L+FCN FD C I R
Sbjct: 461 LVENQQNKKVKCLRTDNGLEFCNLKFDAYCKDHGIER 497
Score = 39.7 bits (91), Expect(2) = 3e-09
Identities = 16/27 (59%), Positives = 22/27 (81%)
Frame = -2
Query: 87 TVSYNPQ*NTVAERMNRTVMDKVTCLI 7
T +Y PQ N VA+RMNRT+M+KV C++
Sbjct: 500 TCTYTPQQNGVADRMNRTIMEKVRCML 526
>emb|CAA37919.1| unnamed protein product [Arabidopsis thaliana]
Length = 238
Score = 47.0 bits (110), Expect(2) = 3e-09
Identities = 22/37 (59%), Positives = 25/37 (67%)
Frame = -3
Query: 203 LVENQTDKKLKVLRTDNSLKFCNKNFDDLCAKCNITR 93
LVENQ +KK+K LRTDN L+FCN FD C I R
Sbjct: 25 LVENQQNKKVKCLRTDNGLEFCNLKFDAYCKDHGIER 61
Score = 39.7 bits (91), Expect(2) = 3e-09
Identities = 16/27 (59%), Positives = 22/27 (81%)
Frame = -2
Query: 87 TVSYNPQ*NTVAERMNRTVMDKVTCLI 7
T +Y PQ N VA+RMNRT+M+KV C++
Sbjct: 64 TCTYTPQQNGVADRMNRTIMEKVRCML 90
>gb|AAC62132.1| copia-like retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1137
Score = 50.1 bits (118), Expect(2) = 4e-09
Identities = 21/39 (53%), Positives = 29/39 (74%)
Frame = -3
Query: 203 LVENQTDKKLKVLRTDNSLKFCNKNFDDLCAKCNITRQK 87
+VE Q+++KLK LRTDN L+FCN FD++C K I R +
Sbjct: 346 MVETQSERKLKHLRTDNGLEFCNHKFDEVCKKEGIVRHR 384
Score = 36.2 bits (82), Expect(2) = 4e-09
Identities = 15/28 (53%), Positives = 22/28 (78%)
Frame = -2
Query: 90 KTVSYNPQ*NTVAERMNRTVMDKVTCLI 7
+T +Y PQ N VAER+NRT+M+KV ++
Sbjct: 384 RTCTYTPQQNGVAERLNRTIMNKVRSML 411
>gb|AAC28238.1| contains similarity to reverse trancriptase (Pfam: rvt.hmm, score:
19.54) and CCHC-type zinc fingers (Pfam: zf-CCHC.hmm,
score: 12.35) [Arabidopsis thaliana]
gi|7267184|emb|CAB77896.1| putative transposon protein
[Arabidopsis thaliana]
Length = 1104
Score = 52.0 bits (123), Expect(2) = 5e-09
Identities = 22/39 (56%), Positives = 27/39 (69%)
Frame = -3
Query: 203 LVENQTDKKLKVLRTDNSLKFCNKNFDDLCAKCNITRQK 87
+VEN KK+K LRTDN L+FCN F+D CAK I R +
Sbjct: 456 IVENHVGKKVKTLRTDNGLEFCNNRFNDYCAKTGIERHR 494
Score = 33.9 bits (76), Expect(2) = 5e-09
Identities = 14/24 (58%), Positives = 19/24 (79%)
Frame = -2
Query: 90 KTVSYNPQ*NTVAERMNRTVMDKV 19
+T +Y PQ N V +RMNRT+M+KV
Sbjct: 494 RTCTYTPQQNGVTKRMNRTIMEKV 517
>emb|CAE03833.3| OSJNBb0013J13.10 [Oryza sativa Japonica Group]
Length = 500
Score = 48.1 bits (113), Expect(2) = 5e-09
Identities = 21/37 (56%), Positives = 27/37 (72%)
Frame = -3
Query: 203 LVENQTDKKLKVLRTDNSLKFCNKNFDDLCAKCNITR 93
++E QT+K++KVLRTDN KFC+ FDD C K I R
Sbjct: 408 MIERQTEKEVKVLRTDNGGKFCSDAFDDYCRKEGIVR 444
Score = 37.7 bits (86), Expect(2) = 5e-09
Identities = 15/27 (55%), Positives = 20/27 (74%)
Frame = -2
Query: 87 TVSYNPQ*NTVAERMNRTVMDKVTCLI 7
T+ Y PQ N VAERMNRT++ K C++
Sbjct: 447 TIPYTPQQNGVAERMNRTIISKARCML 473
>emb|CAB40039.1| putative retrotransposon [Arabidopsis thaliana]
gi|7267743|emb|CAB78169.1| putative retrotransposon
[Arabidopsis thaliana]
Length = 1230
Score = 50.4 bits (119), Expect(2) = 9e-09
Identities = 20/39 (51%), Positives = 29/39 (74%)
Frame = -3
Query: 203 LVENQTDKKLKVLRTDNSLKFCNKNFDDLCAKCNITRQK 87
+VENQT +K+K+LR DN L+FCN+ F+D C + I R +
Sbjct: 536 MVENQTGRKIKILRIDNGLEFCNQQFNDFCKEKGIVRHQ 574
Score = 34.7 bits (78), Expect(2) = 9e-09
Identities = 15/24 (62%), Positives = 19/24 (79%)
Frame = -2
Query: 90 KTVSYNPQ*NTVAERMNRTVMDKV 19
+T +Y PQ N VAERMN T+M+KV
Sbjct: 574 QTCAYTPQQNGVAERMNHTIMEKV 597
>gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1278
Score = 47.0 bits (110), Expect(2) = 1e-08
Identities = 20/37 (54%), Positives = 28/37 (75%)
Frame = -3
Query: 203 LVENQTDKKLKVLRTDNSLKFCNKNFDDLCAKCNITR 93
++E QT+K++KVLRTDN+ +FC+ FDD C K I R
Sbjct: 539 MIERQTEKEVKVLRTDNAGEFCSDAFDDYCRKEGIVR 575
Score = 37.7 bits (86), Expect(2) = 1e-08
Identities = 15/27 (55%), Positives = 20/27 (74%)
Frame = -2
Query: 87 TVSYNPQ*NTVAERMNRTVMDKVTCLI 7
T+ Y PQ N VAERMNRT++ K C++
Sbjct: 578 TIPYTPQQNGVAERMNRTIISKARCML 604
>emb|CAN61630.1| hypothetical protein VITISV_003191 [Vitis vinifera]
Length = 1208
Score = 44.3 bits (103), Expect(2) = 1e-08
Identities = 20/39 (51%), Positives = 27/39 (69%)
Frame = -3
Query: 203 LVENQTDKKLKVLRTDNSLKFCNKNFDDLCAKCNITRQK 87
LVE QT +K+K LRTDN L+F + +F+ LC K I R +
Sbjct: 504 LVETQTSRKVKKLRTDNGLEFLSNDFNSLCQKEGIARHR 542
Score = 40.0 bits (92), Expect(2) = 1e-08
Identities = 16/30 (53%), Positives = 24/30 (80%)
Frame = -2
Query: 90 KTVSYNPQ*NTVAERMNRTVMDKVTCLILS 1
+TV Y PQ N +AERMNRT++++V C++ S
Sbjct: 542 RTVRYTPQQNGLAERMNRTILERVRCMLSS 571
>gb|AAK52561.1|AC079853_14 Putative retroelement pol polyprotein [Oryza sativa Japonica Group]
gi|108708632|gb|ABF96427.1| retrotransposon protein,
putative, Ty1-copia subclass [Oryza sativa Japonica
Group]
Length = 1326
Score = 45.8 bits (107), Expect(2) = 2e-08
Identities = 20/36 (55%), Positives = 26/36 (72%)
Frame = -3
Query: 200 VENQTDKKLKVLRTDNSLKFCNKNFDDLCAKCNITR 93
+E QT+K++KVLRTDN +FC+ FDD C K I R
Sbjct: 540 IERQTEKEVKVLRTDNGGEFCSDAFDDYCRKEGIVR 575
Score = 37.7 bits (86), Expect(2) = 2e-08
Identities = 15/27 (55%), Positives = 20/27 (74%)
Frame = -2
Query: 87 TVSYNPQ*NTVAERMNRTVMDKVTCLI 7
T+ Y PQ N VAERMNRT++ K C++
Sbjct: 578 TIPYTPQQNGVAERMNRTIISKARCML 604