BLASTX nr result
ID: Catharanthus23_contig00034417
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Catharanthus23_contig00034417
(665 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|EXB73293.1| Retrovirus-related Pol polyprotein from transposo... 73 9e-11
emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis] 71 3e-10
gb|AAX96781.1| retrotransposon protein, putative, Ty1-copia sub-... 69 2e-09
emb|CAI44659.1| OSJNBa0061C06.9 [Oryza sativa Japonica Group] 69 2e-09
gb|AAD19773.1| putative retroelement pol polyprotein [Arabidopsi... 69 2e-09
emb|CAN70013.1| hypothetical protein VITISV_017116 [Vitis vinifera] 68 2e-09
gb|AAC62132.1| copia-like retroelement pol polyprotein [Arabidop... 68 2e-09
emb|CAH65740.1| OSIGBa0127D24.3 [Oryza sativa Indica Group] 67 4e-09
gb|AAD23690.1| putative retroelement pol polyprotein [Arabidopsi... 67 4e-09
gb|AAD32759.1| putative retroelement pol polyprotein [Arabidopsi... 67 5e-09
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-... 67 6e-09
gb|AAM08562.1|AC092749_15 Putative retroelement [Oryza sativa Ja... 67 6e-09
ref|NP_001065797.2| Os11g0157000 [Oryza sativa Japonica Group] g... 67 6e-09
gb|AAP53216.2| retrotransposon protein, putative, Ty1-copia subc... 67 6e-09
gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group] 65 1e-08
gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subc... 65 1e-08
emb|CAB40039.1| putative retrotransposon [Arabidopsis thaliana] ... 65 1e-08
emb|CAJ86192.1| H0306F03.15 [Oryza sativa Indica Group] 64 3e-08
emb|CAJ86151.1| H0413E07.4 [Oryza sativa Indica Group] 64 3e-08
emb|CAD40363.2| OSJNBa0093P23.9 [Oryza sativa Japonica Group] 64 5e-08
>gb|EXB73293.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Morus
notabilis]
Length = 1822
Score = 72.8 bits (177), Expect = 9e-11
Identities = 38/81 (46%), Positives = 47/81 (58%)
Frame = -2
Query: 652 IPKPFWVEVVNTVVYLINRSPSIALILKLRWRYGLVYYQPFFILRVFDCIVFTH*W*GKR 473
+PK FW EVVNT YL+NR P A+ K Y F L+VF C + H GK
Sbjct: 71 LPKRFWGEVVNTAAYLVNRCPLAAIDFKTPEEVWTDYPLNFENLKVFGCTAYAHQKEGKL 130
Query: 472 DPRSKKGVFYGYPDCVIGYKI 410
DPR+KK +F GYP+ V GYK+
Sbjct: 131 DPRAKKCMFVGYPEGVKGYKL 151
>emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis]
Length = 1334
Score = 71.2 bits (173), Expect = 3e-10
Identities = 41/89 (46%), Positives = 51/89 (57%), Gaps = 3/89 (3%)
Frame = -2
Query: 652 IPKPFWVEVVNTVVYLINRSPSIALILKLR---WRYGLVYYQPFFILRVFDCIVFTH*W* 482
+P+ FW E VNT YL+NRSPS A+ K W YQ LRVF C + H
Sbjct: 606 LPRSFWAEAVNTASYLVNRSPSSAIGFKTPEELWNGKPANYQN---LRVFGCPAYLHINQ 662
Query: 481 GKRDPRSKKGVFYGYPDCVIGYKIRLRNE 395
GK + R+ KGVF GYPD V GYKI +++
Sbjct: 663 GKLEARALKGVFVGYPDGVKGYKIWCKDQ 691
>gb|AAX96781.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
sativa Japonica Group] gi|77549746|gb|ABA92543.1|
retrotransposon protein, putative, Ty1-copia subclass,
expressed [Oryza sativa Japonica Group]
Length = 1170
Score = 68.6 bits (166), Expect = 2e-09
Identities = 39/84 (46%), Positives = 47/84 (55%), Gaps = 3/84 (3%)
Frame = -2
Query: 652 IPKPFWVEVVNTVVYLINRSPSIALILKLR---WRYGLVYYQPFFILRVFDCIVFTH*W* 482
+PK FW E V+T YLINRSPS A+ K W Y LRVF CI + H
Sbjct: 651 LPKQFWAEAVSTACYLINRSPSYAIDKKTPIEVWSGSPANYSD---LRVFGCIAYAHVDN 707
Query: 481 GKRDPRSKKGVFYGYPDCVIGYKI 410
GK +PR+ K +F GYP V GYK+
Sbjct: 708 GKLEPRAIKCIFLGYPSGVKGYKL 731
>emb|CAI44659.1| OSJNBa0061C06.9 [Oryza sativa Japonica Group]
Length = 1007
Score = 68.6 bits (166), Expect = 2e-09
Identities = 39/84 (46%), Positives = 48/84 (57%), Gaps = 3/84 (3%)
Frame = -2
Query: 652 IPKPFWVEVVNTVVYLINRSPSIALILKLR---WRYGLVYYQPFFILRVFDCIVFTH*W* 482
+PK FWVE V+T YLINRSPS A+ K W V Y LRVF C + H
Sbjct: 398 LPKQFWVETVSTACYLINRSPSYAIDKKTPIEVWSDSPVNYSD---LRVFGCTAYAHVDN 454
Query: 481 GKRDPRSKKGVFYGYPDCVIGYKI 410
GK +PR+ K +F GYP + GYK+
Sbjct: 455 GKLEPRAIKCIFLGYPSGMKGYKL 478
>gb|AAD19773.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1335
Score = 68.6 bits (166), Expect = 2e-09
Identities = 38/82 (46%), Positives = 47/82 (57%), Gaps = 3/82 (3%)
Frame = -2
Query: 646 KPFWVEVVNTVVYLINRSPSIALILKL---RWRYGLVYYQPFFILRVFDCIVFTH*W*GK 476
K FW E +T VYLINRSPS A+ L +W L LR F C+ + H GK
Sbjct: 600 KKFWAEAASTAVYLINRSPSTAINFDLPEEKWTGAL---PDLSSLRKFGCLAYIHADQGK 656
Query: 475 RDPRSKKGVFYGYPDCVIGYKI 410
+PRSKKG+F YP+ V GYK+
Sbjct: 657 LNPRSKKGIFTSYPEGVKGYKV 678
>emb|CAN70013.1| hypothetical protein VITISV_017116 [Vitis vinifera]
Length = 947
Score = 68.2 bits (165), Expect = 2e-09
Identities = 40/92 (43%), Positives = 54/92 (58%), Gaps = 3/92 (3%)
Frame = -2
Query: 661 SFVIPKPFWVEVVNTVVYLINRSPSIALILKL---RWRYGLVYYQPFFILRVFDCIVFTH 491
S + K FWVE V TVV+LI+RSPS AL K +W +V YQ L+VF C + H
Sbjct: 605 SLGLSKVFWVEAVETVVHLISRSPSSALQFKTPQEKWTGKVVDYQH---LKVFGCTAYVH 661
Query: 490 *W*GKRDPRSKKGVFYGYPDCVIGYKIRLRNE 395
K +PR+ K +F GYP V GYK+ ++ +
Sbjct: 662 TKTDKLEPRAVKCIFLGYPKGVKGYKLWIKTQ 693
>gb|AAC62132.1| copia-like retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1137
Score = 68.2 bits (165), Expect = 2e-09
Identities = 35/86 (40%), Positives = 51/86 (59%)
Frame = -2
Query: 652 IPKPFWVEVVNTVVYLINRSPSIALILKLRWRYGLVYYQPFFILRVFDCIVFTH*W*GKR 473
+ K FW + +T VYLINRSPS ++ K+ F L+ F C+V+ + GK
Sbjct: 416 LDKKFWAKAASTAVYLINRSPSSSIENKIPEELWTSAVPNFSGLKRFGCVVYVYSQEGKL 475
Query: 472 DPRSKKGVFYGYPDCVIGYKIRLRNE 395
DPR+KKGVF GYP+ V G+++ + E
Sbjct: 476 DPRAKKGVFVGYPNGVKGFRVWMIEE 501
>emb|CAH65740.1| OSIGBa0127D24.3 [Oryza sativa Indica Group]
Length = 1009
Score = 67.4 bits (163), Expect = 4e-09
Identities = 36/81 (44%), Positives = 45/81 (55%)
Frame = -2
Query: 652 IPKPFWVEVVNTVVYLINRSPSIALILKLRWRYGLVYYQPFFILRVFDCIVFTH*W*GKR 473
+PK FW E V+T YLINRSPS A+ K + LRVF C + H GK
Sbjct: 437 LPKQFWAEAVSTACYLINRSPSYAIDKKTPIEVWSSSPAKYSDLRVFSCTAYAHVDNGKL 496
Query: 472 DPRSKKGVFYGYPDCVIGYKI 410
+PR+ K +F GYP V GYK+
Sbjct: 497 EPRAIKCIFLGYPSGVKGYKL 517
>gb|AAD23690.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1333
Score = 67.4 bits (163), Expect = 4e-09
Identities = 40/89 (44%), Positives = 49/89 (55%), Gaps = 3/89 (3%)
Frame = -2
Query: 652 IPKPFWVEVVNTVVYLINRSPSIALILKL---RWRYGLVYYQPFFILRVFDCIVFTH*W* 482
+PK FW E +T LIN++PS AL ++ RW Y LR F CI F H
Sbjct: 600 LPKKFWAEATHTTAILINKTPSSALNYEVPDKRWSGKSPIYS---YLRRFGCIAFVHTDD 656
Query: 481 GKRDPRSKKGVFYGYPDCVIGYKIRLRNE 395
GK +PR+KKG+ GYP V GYKI L E
Sbjct: 657 GKLNPRAKKGILVGYPIGVKGYKIWLLEE 685
>gb|AAD32759.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1356
Score = 67.0 bits (162), Expect = 5e-09
Identities = 37/89 (41%), Positives = 51/89 (57%), Gaps = 3/89 (3%)
Frame = -2
Query: 652 IPKPFWVEVVNTVVYLINRSPSIALILKL---RWRYGLVYYQPFFILRVFDCIVFTH*W* 482
+PK FW E +T V LIN++PS AL ++ +W Y LR + C+ F H
Sbjct: 622 LPKRFWAEATHTTVLLINKTPSSALNFEIPDKKWSGNPPVYS---YLRRYGCVAFVHTDD 678
Query: 481 GKRDPRSKKGVFYGYPDCVIGYKIRLRNE 395
GK +PR+KKGV GYP V GYK+ + +E
Sbjct: 679 GKLEPRAKKGVLIGYPVGVKGYKVWILDE 707
>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
Japonica Group] gi|77548751|gb|ABA91548.1|
retrotransposon protein, putative, Ty1-copia subclass
[Oryza sativa Japonica Group]
Length = 2340
Score = 66.6 bits (161), Expect = 6e-09
Identities = 38/84 (45%), Positives = 46/84 (54%), Gaps = 3/84 (3%)
Frame = -2
Query: 652 IPKPFWVEVVNTVVYLINRSPSIALILKLR---WRYGLVYYQPFFILRVFDCIVFTH*W* 482
+PK FW E V+T YLINRSPS A+ K W Y LRVF C + H
Sbjct: 823 LPKQFWAEAVSTACYLINRSPSYAIDKKTPIEVWSGSPANYSD---LRVFGCTAYAHVDN 879
Query: 481 GKRDPRSKKGVFYGYPDCVIGYKI 410
GK +PR+ K +F GYP V GYK+
Sbjct: 880 GKLEPRAIKCIFLGYPSGVKGYKL 903
>gb|AAM08562.1|AC092749_15 Putative retroelement [Oryza sativa Japonica Group]
gi|20087076|gb|AAM10749.1|AC112514_2 Putative
retroelement [Oryza sativa Japonica Group]
Length = 1225
Score = 66.6 bits (161), Expect = 6e-09
Identities = 36/81 (44%), Positives = 46/81 (56%)
Frame = -2
Query: 652 IPKPFWVEVVNTVVYLINRSPSIALILKLRWRYGLVYYQPFFILRVFDCIVFTH*W*GKR 473
+PK FW E V+T YLINRSPS A+ K + + LRVF CI + H K
Sbjct: 577 LPKQFWAEAVSTACYLINRSPSYAIDKKTPIKVWSGSPANYSDLRVFGCIAYAHVDNSKL 636
Query: 472 DPRSKKGVFYGYPDCVIGYKI 410
+PR+ K +F GYP V GYK+
Sbjct: 637 EPRAIKCIFLGYPSGVKGYKL 657
>ref|NP_001065797.2| Os11g0157000 [Oryza sativa Japonica Group]
gi|255679807|dbj|BAF27642.2| Os11g0157000 [Oryza sativa
Japonica Group]
Length = 1601
Score = 66.6 bits (161), Expect = 6e-09
Identities = 38/84 (45%), Positives = 46/84 (54%), Gaps = 3/84 (3%)
Frame = -2
Query: 652 IPKPFWVEVVNTVVYLINRSPSIALILKLR---WRYGLVYYQPFFILRVFDCIVFTH*W* 482
+PK FW E V+T YLINRSPS A+ K W Y LRVF C + H
Sbjct: 616 LPKQFWAEAVSTACYLINRSPSYAIDKKTPIEVWSGSPANYSD---LRVFGCTAYAHVDN 672
Query: 481 GKRDPRSKKGVFYGYPDCVIGYKI 410
GK +PR+ K +F GYP V GYK+
Sbjct: 673 GKLEPRAIKCIFLGYPSGVKGYKL 696
>gb|AAP53216.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1262
Score = 66.6 bits (161), Expect = 6e-09
Identities = 36/81 (44%), Positives = 46/81 (56%)
Frame = -2
Query: 652 IPKPFWVEVVNTVVYLINRSPSIALILKLRWRYGLVYYQPFFILRVFDCIVFTH*W*GKR 473
+PK FW E V+T YLINRSPS A+ K + + LRVF CI + H K
Sbjct: 614 LPKQFWAEAVSTACYLINRSPSYAIDKKTPIKVWSGSPANYSDLRVFGCIAYAHVDNSKL 673
Query: 472 DPRSKKGVFYGYPDCVIGYKI 410
+PR+ K +F GYP V GYK+
Sbjct: 674 EPRAIKCIFLGYPSGVKGYKL 694
>gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1280
Score = 65.5 bits (158), Expect = 1e-08
Identities = 38/84 (45%), Positives = 45/84 (53%), Gaps = 3/84 (3%)
Frame = -2
Query: 652 IPKPFWVEVVNTVVYLINRSPSIALILKLR---WRYGLVYYQPFFILRVFDCIVFTH*W* 482
+PK FW E V+T YLINRSPS A K W Y LRVF C + H
Sbjct: 651 LPKQFWAEAVSTTCYLINRSPSYATDKKTPIEVWSGSPANYSD---LRVFGCTAYAHVDN 707
Query: 481 GKRDPRSKKGVFYGYPDCVIGYKI 410
GK +PR+ K +F GYP V GYK+
Sbjct: 708 GKLEPRAIKCIFLGYPSGVKGYKL 731
>gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1312
Score = 65.5 bits (158), Expect = 1e-08
Identities = 38/84 (45%), Positives = 45/84 (53%), Gaps = 3/84 (3%)
Frame = -2
Query: 652 IPKPFWVEVVNTVVYLINRSPSIALILKLR---WRYGLVYYQPFFILRVFDCIVFTH*W* 482
+PK FW E V+T YLINRSPS A K W Y LRVF C + H
Sbjct: 651 LPKQFWAEAVSTTCYLINRSPSYATDKKTPIEVWSGSPANYSD---LRVFGCTAYAHVDN 707
Query: 481 GKRDPRSKKGVFYGYPDCVIGYKI 410
GK +PR+ K +F GYP V GYK+
Sbjct: 708 GKLEPRAIKCIFLGYPSGVKGYKL 731
>emb|CAB40039.1| putative retrotransposon [Arabidopsis thaliana]
gi|7267743|emb|CAB78169.1| putative retrotransposon
[Arabidopsis thaliana]
Length = 1230
Score = 65.5 bits (158), Expect = 1e-08
Identities = 39/89 (43%), Positives = 50/89 (56%), Gaps = 3/89 (3%)
Frame = -2
Query: 652 IPKPFWVEVVNTVVYLINRSPSIALILKL---RWRYGLVYYQPFFILRVFDCIVFTH*W* 482
+PK FW E NTVV LIN++PS A+ ++ RW Y L+ F C+ FT+
Sbjct: 606 LPKTFWAEATNTVVTLINKTPSSAVNFEISDKRWSGKSPVYN---YLKRFGCVAFTYADE 662
Query: 481 GKRDPRSKKGVFYGYPDCVIGYKIRLRNE 395
GK PR+KKGVF GY GYK+ L E
Sbjct: 663 GKLVPRAKKGVFLGYLSGEKGYKVWLLEE 691
>emb|CAJ86192.1| H0306F03.15 [Oryza sativa Indica Group]
Length = 1037
Score = 64.3 bits (155), Expect = 3e-08
Identities = 34/81 (41%), Positives = 45/81 (55%)
Frame = -2
Query: 652 IPKPFWVEVVNTVVYLINRSPSIALILKLRWRYGLVYYQPFFILRVFDCIVFTH*W*GKR 473
+PK FW E V+T YLINRSP A+ K + + L+VF C + H GK
Sbjct: 433 LPKQFWAEAVSTACYLINRSPGYAIDKKTPIKVWSGSPANYSDLKVFGCTAYAHVDNGKL 492
Query: 472 DPRSKKGVFYGYPDCVIGYKI 410
+PR+ K +F GYP V GYK+
Sbjct: 493 EPRTIKCIFLGYPSGVKGYKL 513
>emb|CAJ86151.1| H0413E07.4 [Oryza sativa Indica Group]
Length = 1205
Score = 64.3 bits (155), Expect = 3e-08
Identities = 34/81 (41%), Positives = 45/81 (55%)
Frame = -2
Query: 652 IPKPFWVEVVNTVVYLINRSPSIALILKLRWRYGLVYYQPFFILRVFDCIVFTH*W*GKR 473
+PK FW E V+T YLINRSP A+ K + + L+VF C + H GK
Sbjct: 601 LPKQFWAEAVSTACYLINRSPGYAIDKKTPIKVWSGSPANYSDLKVFGCTAYAHVDNGKL 660
Query: 472 DPRSKKGVFYGYPDCVIGYKI 410
+PR+ K +F GYP V GYK+
Sbjct: 661 EPRTIKCIFLGYPSGVKGYKL 681
>emb|CAD40363.2| OSJNBa0093P23.9 [Oryza sativa Japonica Group]
Length = 944
Score = 63.5 bits (153), Expect = 5e-08
Identities = 34/81 (41%), Positives = 45/81 (55%)
Frame = -2
Query: 652 IPKPFWVEVVNTVVYLINRSPSIALILKLRWRYGLVYYQPFFILRVFDCIVFTH*W*GKR 473
+PK FW V+T YLINRSPS A+ K + + + LRVF C + H GK
Sbjct: 444 LPKQFWAAAVSTTCYLINRSPSYAIDKKTPIKVWSGFPANYSDLRVFGCTAYAHVDNGKL 503
Query: 472 DPRSKKGVFYGYPDCVIGYKI 410
+PR+ K +F GY V GYK+
Sbjct: 504 EPRAIKCIFLGYSSGVKGYKL 524