BLASTX nr result
ID: Catharanthus23_contig00033481
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Catharanthus23_contig00033481
(461 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM82604.1|AF525305_2 putative AP endonuclease/reverse transc... 85 5e-32
emb|CCA65979.1| hypothetical protein [Beta vulgaris subsp. vulga... 96 2e-30
ref|XP_006599894.1| PREDICTED: uncharacterized protein LOC102668... 83 4e-27
emb|CAB72467.1| putative protein [Arabidopsis thaliana] 82 3e-26
gb|AAG50806.1|AC079281_8 unknown protein [Arabidopsis thaliana] 82 3e-25
ref|XP_004293181.1| PREDICTED: uncharacterized protein LOC101298... 70 3e-25
emb|CCA65981.1| hypothetical protein [Beta vulgaris subsp. vulga... 88 5e-25
ref|XP_004247247.1| PREDICTED: uncharacterized protein LOC101256... 82 8e-25
emb|CAA18234.1| putative protein [Arabidopsis thaliana] gi|72694... 79 1e-24
gb|AAC19278.1| T14P8.10 [Arabidopsis thaliana] gi|7269009|emb|CA... 79 4e-24
gb|AAC78274.1| putative reverse transcriptase [Arabidopsis thali... 79 4e-24
ref|XP_006576082.1| PREDICTED: uncharacterized protein LOC102659... 82 5e-24
dbj|BAB01845.1| non-LTR retroelement reverse transcriptase-like ... 75 5e-24
emb|CAA66812.1| non-ltr retrotransposon reverse transcriptase-li... 75 5e-24
gb|AAD08951.1| putative reverse transcriptase [Arabidopsis thali... 75 1e-23
gb|AAF87143.1|AC002423_8 T23E23.16 [Arabidopsis thaliana] 87 3e-23
gb|AAD21699.1| Contains reverse transcriptase domain (rvt) PF|00... 82 6e-22
emb|CAD22562.1| reverse transcriptase [Brassica rapa subsp. olei... 86 8e-22
gb|AAD32866.1|AC005489_4 F14N23.4 [Arabidopsis thaliana] 78 3e-21
dbj|BAF00918.1| putative reverse transcriptase [Arabidopsis thal... 78 3e-21
>gb|AAM82604.1|AF525305_2 putative AP endonuclease/reverse transcriptase [Brassica napus]
Length = 1214
Score = 84.7 bits (208), Expect(2) = 5e-32
Identities = 36/84 (42%), Positives = 56/84 (66%)
Frame = +3
Query: 210 KGQSIVENIHLAQELMRGYSRKRTTPKCTLKIDIRKAYDIVSWGFLHRVLLALNFPIKFV 389
KG+ + EN+ LA EL++G+ + + + LK+D+RKA+D V WGF+ L A N P +FV
Sbjct: 560 KGRLLTENVLLATELVQGFGQANISSRGVLKVDLRKAFDSVGWGFIIETLKAANAPPRFV 619
Query: 390 EWIMECACSPSYSLKINGGIFGYF 461
WI +C S S+S+ ++G + GYF
Sbjct: 620 NWIKQCITSTSFSINVSGSLCGYF 643
Score = 79.0 bits (193), Expect(2) = 5e-32
Identities = 39/71 (54%), Positives = 49/71 (69%)
Frame = +2
Query: 2 KFFRTGRLLKQANHCIISLIPKSERATSVGYFRLISCCNVFYHVITKLLAHRLGSILPLL 181
+FFR+GRLL Q N ++++PK A + FR ISCCN Y VI+KLLA RL +ILPL
Sbjct: 491 EFFRSGRLLGQWNSTAVTMVPKKPNADRITEFRPISCCNAIYKVISKLLARRLENILPLW 550
Query: 182 IDQAQSVFVKG 214
I +QS FVKG
Sbjct: 551 ISPSQSAFVKG 561
>emb|CCA65979.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1110
Score = 95.9 bits (237), Expect(2) = 2e-30
Identities = 42/77 (54%), Positives = 55/77 (71%)
Frame = +3
Query: 213 GQSIVENIHLAQELMRGYSRKRTTPKCTLKIDIRKAYDIVSWGFLHRVLLALNFPIKFVE 392
G+ I +NI LA EL+RGY+RK +P+C +K+DIRKAYD V W FL +L FP +FV
Sbjct: 553 GRHIADNILLASELIRGYTRKHMSPRCIMKVDIRKAYDSVEWSFLETLLYEFGFPSRFVG 612
Query: 393 WIMECACSPSYSLKING 443
WIMEC + SYS+ +NG
Sbjct: 613 WIMECVSTVSYSVLVNG 629
Score = 62.4 bits (150), Expect(2) = 2e-30
Identities = 27/71 (38%), Positives = 47/71 (66%)
Frame = +2
Query: 2 KFFRTGRLLKQANHCIISLIPKSERATSVGYFRLISCCNVFYHVITKLLAHRLGSILPLL 181
+FF R+ + N +++L+PK + AT V FR I+CC V Y +I+K+L +R+ I+ +
Sbjct: 483 EFFNNSRMHRPINCIVVTLLPKVQHATRVKEFRPIACCTVIYKIISKMLTNRMKGIIGEV 542
Query: 182 IDQAQSVFVKG 214
+++AQS F+ G
Sbjct: 543 VNEAQSGFIPG 553
>ref|XP_006599894.1| PREDICTED: uncharacterized protein LOC102668020 [Glycine max]
Length = 603
Score = 83.2 bits (204), Expect(2) = 4e-27
Identities = 34/70 (48%), Positives = 54/70 (77%)
Frame = +2
Query: 2 KFFRTGRLLKQANHCIISLIPKSERATSVGYFRLISCCNVFYHVITKLLAHRLGSILPLL 181
+FF TG++LKQ NH II+LIPK ++A+ V +FR ISCCN+ Y +++K+LA+R+ +L +
Sbjct: 306 EFFTTGKILKQLNHAIIALIPKHDQASQVNHFRPISCCNLLYKIVSKILANRIAPVLETI 365
Query: 182 IDQAQSVFVK 211
I + Q+ F+K
Sbjct: 366 IGETQTAFIK 375
Score = 63.9 bits (154), Expect(2) = 4e-27
Identities = 31/80 (38%), Positives = 49/80 (61%)
Frame = +3
Query: 210 KGQSIVENIHLAQELMRGYSRKRTTPKCTLKIDIRKAYDIVSWGFLHRVLLALNFPIKFV 389
K + +++NI L QE++R Y+ KR++P+C LKID+ KAYD +SW FL +L ++ F +F
Sbjct: 375 KNKKMMDNIFLIQEILRKYAWKRSSPRCLLKIDLHKAYDSISWEFLDWMLKSIGFLTQFC 434
Query: 390 EWIMECACSPSYSLKINGGI 449
+ A + L G I
Sbjct: 435 IQLSHLAFADDIMLLSRGDI 454
>emb|CAB72467.1| putative protein [Arabidopsis thaliana]
Length = 762
Score = 82.0 bits (201), Expect(2) = 3e-26
Identities = 35/90 (38%), Positives = 57/90 (63%)
Frame = +3
Query: 192 HNQSLSKGQSIVENIHLAQELMRGYSRKRTTPKCTLKIDIRKAYDIVSWGFLHRVLLALN 371
+ S K + ++EN+ LA +L++ Y + + +C +KIDI KA D V W FL L A++
Sbjct: 114 NQSSFVKDRLLIENVLLATDLVKDYHKDSISERCAIKIDISKASDSVQWSFLINTLTAMH 173
Query: 372 FPIKFVEWIMECACSPSYSLKINGGIFGYF 461
FP F+ WI C +PS+S+++NG + G+F
Sbjct: 174 FPEMFIHWIRLCITTPSFSVQVNGELAGFF 203
Score = 62.0 bits (149), Expect(2) = 3e-26
Identities = 34/69 (49%), Positives = 43/69 (62%)
Frame = +2
Query: 5 FFRTGRLLKQANHCIISLIPKSERATSVGYFRLISCCNVFYHVITKLLAHRLGSILPLLI 184
FF G L K N I++LIPK + + +R ISCCNV Y VI+K+LA+RL +LP I
Sbjct: 52 FFALGFLPKGVNSTILALIPKKLESKEMKDYRPISCCNVMYKVISKILANRLKLLLPQFI 111
Query: 185 DQAQSVFVK 211
QS FVK
Sbjct: 112 AGNQSSFVK 120
>gb|AAG50806.1|AC079281_8 unknown protein [Arabidopsis thaliana]
Length = 1213
Score = 82.0 bits (201), Expect(2) = 3e-25
Identities = 35/83 (42%), Positives = 56/83 (67%)
Frame = +3
Query: 213 GQSIVENIHLAQELMRGYSRKRTTPKCTLKIDIRKAYDIVSWGFLHRVLLALNFPIKFVE 392
G+S+ EN+ LA +L+ GY+ +P+ LK+D++KA+D V W F+ L AL P KF+
Sbjct: 562 GRSLAENVLLATDLVHGYNWSNISPRGMLKVDLKKAFDSVRWEFVIAALRALAIPEKFIN 621
Query: 393 WIMECACSPSYSLKINGGIFGYF 461
WI +C +P++++ INGG G+F
Sbjct: 622 WISQCISTPTFTVSINGGNGGFF 644
Score = 58.9 bits (141), Expect(2) = 3e-25
Identities = 34/71 (47%), Positives = 40/71 (56%)
Frame = +2
Query: 2 KFFRTGRLLKQANHCIISLIPKSERATSVGYFRLISCCNVFYHVITKLLAHRLGSILPLL 181
+FF +G LLKQ N I LIPK T FR ISC N Y VI +LL RL +L +
Sbjct: 492 EFFSSGCLLKQWNATTIVLIPKIVNPTCTSDFRPISCLNTLYKVIARLLTDRLQRLLSGV 551
Query: 182 IDQAQSVFVKG 214
I AQS F+ G
Sbjct: 552 ISSAQSAFLPG 562
>ref|XP_004293181.1| PREDICTED: uncharacterized protein LOC101298394 [Fragaria vesca
subsp. vesca]
Length = 958
Score = 70.5 bits (171), Expect(2) = 3e-25
Identities = 34/71 (47%), Positives = 46/71 (64%)
Frame = +2
Query: 2 KFFRTGRLLKQANHCIISLIPKSERATSVGYFRLISCCNVFYHVITKLLAHRLGSILPLL 181
+FF G LL + N II+L+PK T++ FR ISCCN FY +I KLLA+RL L L+
Sbjct: 319 EFFSYGSLLMELNSTIITLVPKVANPTTMSDFRPISCCNTFYKIIAKLLANRLKGTLHLI 378
Query: 182 IDQAQSVFVKG 214
+ +QS F+ G
Sbjct: 379 VGPSQSTFIPG 389
Score = 70.1 bits (170), Expect(2) = 3e-25
Identities = 32/83 (38%), Positives = 47/83 (56%)
Frame = +3
Query: 213 GQSIVENIHLAQELMRGYSRKRTTPKCTLKIDIRKAYDIVSWGFLHRVLLALNFPIKFVE 392
G+ I +NI LAQE++ Y + P+CT +D+ KA D V W F+ L A N P +
Sbjct: 389 GRRIGDNILLAQEIICDYHKADGQPRCTFMVDMMKANDTVEWDFIIATLQAFNIPSTLIG 448
Query: 393 WIMECACSPSYSLKINGGIFGYF 461
WI C S +S+ +NG + G+F
Sbjct: 449 WIKSCISSAKFSVCVNGELAGFF 471
>emb|CCA65981.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1114
Score = 87.8 bits (216), Expect(2) = 5e-25
Identities = 39/74 (52%), Positives = 52/74 (70%)
Frame = +3
Query: 222 IVENIHLAQELMRGYSRKRTTPKCTLKIDIRKAYDIVSWGFLHRVLLALNFPIKFVEWIM 401
I +NI LA EL+RGY+R+ +P+C +K+DIRKAYD V W FL +L L FP F+ WIM
Sbjct: 559 IGDNILLATELIRGYNRRHVSPRCVIKVDIRKAYDSVEWVFLESMLKELGFPSMFIRWIM 618
Query: 402 ECACSPSYSLKING 443
C + SYS+ +NG
Sbjct: 619 ACVKTVSYSILLNG 632
Score = 52.4 bits (124), Expect(2) = 5e-25
Identities = 24/68 (35%), Positives = 41/68 (60%)
Frame = +2
Query: 5 FFRTGRLLKQANHCIISLIPKSERATSVGYFRLISCCNVFYHVITKLLAHRLGSILPLLI 184
FF G + K N ++LIPK + A +R I+CC+ Y +I+K+L RL +++ ++
Sbjct: 487 FFENGFMHKPINCTAVTLIPKIDEAKHAKDYRPIACCSTLYKIISKILTKRLQAVITEVV 546
Query: 185 DQAQSVFV 208
D AQ+ F+
Sbjct: 547 DCAQTGFI 554
>ref|XP_004247247.1| PREDICTED: uncharacterized protein LOC101256917 [Solanum
lycopersicum]
Length = 421
Score = 82.0 bits (201), Expect(2) = 8e-25
Identities = 35/77 (45%), Positives = 52/77 (67%)
Frame = +3
Query: 213 GQSIVENIHLAQELMRGYSRKRTTPKCTLKIDIRKAYDIVSWGFLHRVLLALNFPIKFVE 392
G+ I ENI LA EL+ Y+RK +P+ LKID++K YD V W FL +V++ L FP F +
Sbjct: 221 GRKISENILLAHELVNSYTRKNISPRSMLKIDLQKVYDSVEWPFLKQVMVGLGFPDMFTQ 280
Query: 393 WIMECACSPSYSLKING 443
W+M C + +Y++ +NG
Sbjct: 281 WVMHCVKTVNYTIVVNG 297
Score = 57.4 bits (137), Expect(2) = 8e-25
Identities = 26/74 (35%), Positives = 46/74 (62%)
Frame = +2
Query: 5 FFRTGRLLKQANHCIISLIPKSERATSVGYFRLISCCNVFYHVITKLLAHRLGSILPLLI 184
FF+ G+L K N ++SLIPK + +V +R I+CC V Y +I+K++ +R+ ++ +I
Sbjct: 152 FFKPGKLFKPFNCTLVSLIPKVQSPKNVKEYRTITCCTVLYKIISKVITNRMHDVIHNVI 211
Query: 185 DQAQSVFVKGAEYS 226
+Q F+ G + S
Sbjct: 212 CDSQVGFILGRKIS 225
>emb|CAA18234.1| putative protein [Arabidopsis thaliana] gi|7269488|emb|CAB79491.1|
putative protein [Arabidopsis thaliana]
Length = 1141
Score = 78.6 bits (192), Expect(2) = 1e-24
Identities = 33/83 (39%), Positives = 55/83 (66%)
Frame = +3
Query: 213 GQSIVENIHLAQELMRGYSRKRTTPKCTLKIDIRKAYDIVSWGFLHRVLLALNFPIKFVE 392
G+ + EN+ LA E++ GY+ + + + LK+D+RKA+D V W F+ LLAL P KF+
Sbjct: 540 GRLLAENVLLATEMVHGYNWRNISLRGMLKVDLRKAFDSVRWEFIIAALLALGVPTKFIN 599
Query: 393 WIMECACSPSYSLKINGGIFGYF 461
WI +C +P++++ +NG G+F
Sbjct: 600 WIHQCISTPTFTVSVNGCCGGFF 622
Score = 60.1 bits (144), Expect(2) = 1e-24
Identities = 33/71 (46%), Positives = 41/71 (57%)
Frame = +2
Query: 2 KFFRTGRLLKQANHCIISLIPKSERATSVGYFRLISCCNVFYHVITKLLAHRLGSILPLL 181
+FF +G LLKQ N I LIPK A+ FR ISC N Y VI +LL RL +L +
Sbjct: 470 EFFISGNLLKQWNATTIVLIPKFPNASCTSDFRPISCMNTLYKVIARLLTDRLQKLLSCV 529
Query: 182 IDQAQSVFVKG 214
I +QS F+ G
Sbjct: 530 ISPSQSAFLPG 540
>gb|AAC19278.1| T14P8.10 [Arabidopsis thaliana] gi|7269009|emb|CAB80742.1|
AT4g02490 [Arabidopsis thaliana]
Length = 657
Score = 79.0 bits (193), Expect(2) = 4e-24
Identities = 36/84 (42%), Positives = 53/84 (63%)
Frame = +3
Query: 210 KGQSIVENIHLAQELMRGYSRKRTTPKCTLKIDIRKAYDIVSWGFLHRVLLALNFPIKFV 389
KG+ + EN+ LA EL+ + + T + L++D+ KAYD V+W FL +L ALN P F+
Sbjct: 108 KGRLLCENVLLASELVDNFQAEGDTSRGCLQVDLTKAYDNVNWEFLINILKALNLPPIFI 167
Query: 390 EWIMECACSPSYSLKINGGIFGYF 461
WI C +PSYS+ NG + G+F
Sbjct: 168 NWIWVCISTPSYSIAYNGELIGFF 191
Score = 58.2 bits (139), Expect(2) = 4e-24
Identities = 29/71 (40%), Positives = 40/71 (56%)
Frame = +2
Query: 2 KFFRTGRLLKQANHCIISLIPKSERATSVGYFRLISCCNVFYHVITKLLAHRLGSILPLL 181
+FF TG LLK N I+LIPK A + FR ++CC Y VIT+L++ RL +
Sbjct: 39 EFFLTGHLLKGFNATAITLIPKVPGADQLNLFRPVACCTTIYKVITRLISKRLNLFIDQA 98
Query: 182 IDQAQSVFVKG 214
+ Q F+KG
Sbjct: 99 VQSNQVGFIKG 109
>gb|AAC78274.1| putative reverse transcriptase [Arabidopsis thaliana]
Length = 543
Score = 79.0 bits (193), Expect(2) = 4e-24
Identities = 36/84 (42%), Positives = 53/84 (63%)
Frame = +3
Query: 210 KGQSIVENIHLAQELMRGYSRKRTTPKCTLKIDIRKAYDIVSWGFLHRVLLALNFPIKFV 389
KG+ + EN+ LA EL+ + + T + L++D+ KAYD V+W FL +L ALN P F+
Sbjct: 108 KGRLLCENVLLASELVDNFQAEGDTSRGCLQVDLTKAYDNVNWEFLINILKALNLPPIFI 167
Query: 390 EWIMECACSPSYSLKINGGIFGYF 461
WI C +PSYS+ NG + G+F
Sbjct: 168 NWIWVCISTPSYSIAYNGELIGFF 191
Score = 58.2 bits (139), Expect(2) = 4e-24
Identities = 29/71 (40%), Positives = 40/71 (56%)
Frame = +2
Query: 2 KFFRTGRLLKQANHCIISLIPKSERATSVGYFRLISCCNVFYHVITKLLAHRLGSILPLL 181
+FF TG LLK N I+LIPK A + FR ++CC Y VIT+L++ RL +
Sbjct: 39 EFFLTGHLLKGFNATAITLIPKVPGADQLNLFRPVACCTTIYKVITRLISKRLNLFIDQA 98
Query: 182 IDQAQSVFVKG 214
+ Q F+KG
Sbjct: 99 VQSNQVGFIKG 109
>ref|XP_006576082.1| PREDICTED: uncharacterized protein LOC102659506 [Glycine max]
Length = 964
Score = 82.0 bits (201), Expect(2) = 5e-24
Identities = 34/70 (48%), Positives = 53/70 (75%)
Frame = +2
Query: 2 KFFRTGRLLKQANHCIISLIPKSERATSVGYFRLISCCNVFYHVITKLLAHRLGSILPLL 181
+FF TG++LKQ NH II LIPK ++A+ V +FR ISCCN+ Y +++K+LA+R+ +L +
Sbjct: 854 EFFTTGKILKQLNHAIIVLIPKHDQASQVNHFRPISCCNLLYKIVSKILANRIAPVLETI 913
Query: 182 IDQAQSVFVK 211
I + Q+ F+K
Sbjct: 914 IGETQTAFIK 923
Score = 54.7 bits (130), Expect(2) = 5e-24
Identities = 22/42 (52%), Positives = 33/42 (78%)
Frame = +3
Query: 210 KGQSIVENIHLAQELMRGYSRKRTTPKCTLKIDIRKAYDIVS 335
K + +++NI L QE++R Y+RKR +P+C LKID+ KAYD +S
Sbjct: 923 KNRKMMDNIFLVQEILRKYARKRPSPRCLLKIDLHKAYDFIS 964
>dbj|BAB01845.1| non-LTR retroelement reverse transcriptase-like protein
[Arabidopsis thaliana]
Length = 893
Score = 75.1 bits (183), Expect(2) = 5e-24
Identities = 34/83 (40%), Positives = 52/83 (62%)
Frame = +3
Query: 213 GQSIVENIHLAQELMRGYSRKRTTPKCTLKIDIRKAYDIVSWGFLHRVLLALNFPIKFVE 392
G+ + EN+ LA E++ GY+ K + + LK+D+RKA+D V W F+ AL P KFV
Sbjct: 563 GRLLSENVLLATEIVHGYNTKNISSRGMLKVDLRKAFDSVRWDFIISAFRALAVPEKFVC 622
Query: 393 WIMECACSPSYSLKINGGIFGYF 461
WI +C +P +S+ +NG G+F
Sbjct: 623 WINQCISTPYFSVMVNGSSSGFF 645
Score = 61.6 bits (148), Expect(2) = 5e-24
Identities = 33/71 (46%), Positives = 44/71 (61%)
Frame = +2
Query: 2 KFFRTGRLLKQANHCIISLIPKSERATSVGYFRLISCCNVFYHVITKLLAHRLGSILPLL 181
+FFR+G+LLKQ N + LIPK ++ + FR ISC N Y VI KLL RL +L +
Sbjct: 493 EFFRSGQLLKQWNATTLVLIPKITNSSKMTDFRPISCLNTLYKVIAKLLTSRLKKLLNEV 552
Query: 182 IDQAQSVFVKG 214
I +QS F+ G
Sbjct: 553 ISPSQSAFLPG 563
>emb|CAA66812.1| non-ltr retrotransposon reverse transcriptase-like protein
[Arabidopsis thaliana]
Length = 893
Score = 75.1 bits (183), Expect(2) = 5e-24
Identities = 34/83 (40%), Positives = 52/83 (62%)
Frame = +3
Query: 213 GQSIVENIHLAQELMRGYSRKRTTPKCTLKIDIRKAYDIVSWGFLHRVLLALNFPIKFVE 392
G+ + EN+ LA E++ GY+ K + + LK+D+RKA+D V W F+ AL P KFV
Sbjct: 563 GRLLSENVLLATEIVHGYNTKNISSRGMLKVDLRKAFDSVRWDFIISAFRALAVPEKFVC 622
Query: 393 WIMECACSPSYSLKINGGIFGYF 461
WI +C +P +S+ +NG G+F
Sbjct: 623 WINQCISTPYFSVMVNGSSSGFF 645
Score = 61.6 bits (148), Expect(2) = 5e-24
Identities = 33/71 (46%), Positives = 44/71 (61%)
Frame = +2
Query: 2 KFFRTGRLLKQANHCIISLIPKSERATSVGYFRLISCCNVFYHVITKLLAHRLGSILPLL 181
+FFR+G+LLKQ N + LIPK ++ + FR ISC N Y VI KLL RL +L +
Sbjct: 493 EFFRSGQLLKQWNATTLVLIPKITNSSKMTDFRPISCLNTLYKVIAKLLTSRLKKLLNEV 552
Query: 182 IDQAQSVFVKG 214
I +QS F+ G
Sbjct: 553 ISPSQSAFLPG 563
>gb|AAD08951.1| putative reverse transcriptase [Arabidopsis thaliana]
gi|20197043|gb|AAM14892.1| putative reverse transcriptase
[Arabidopsis thaliana]
Length = 1412
Score = 75.5 bits (184), Expect(2) = 1e-23
Identities = 32/74 (43%), Positives = 50/74 (67%)
Frame = +3
Query: 222 IVENIHLAQELMRGYSRKRTTPKCTLKIDIRKAYDIVSWGFLHRVLLALNFPIKFVEWIM 401
++EN+ LA EL++ Y + +P+C +KID+ KA+D V W FL L AL+ P KF+ WI
Sbjct: 837 LMENLLLASELVKDYHKDGLSPRCAMKIDLSKAFDSVQWPFLLNTLAALDIPEKFIHWIN 896
Query: 402 ECACSPSYSLKING 443
C + S+S+++NG
Sbjct: 897 LCISTASFSVQVNG 910
Score = 60.1 bits (144), Expect(2) = 1e-23
Identities = 33/68 (48%), Positives = 41/68 (60%)
Frame = +2
Query: 5 FFRTGRLLKQANHCIISLIPKSERATSVGYFRLISCCNVFYHVITKLLAHRLGSILPLLI 184
FF G L K N I++LIPK A + +R ISCCNV Y I+KLLA+RL +LP I
Sbjct: 765 FFTYGFLPKGLNSTILALIPKRTYAKEMKDYRPISCCNVLYKAISKLLANRLKCLLPEFI 824
Query: 185 DQAQSVFV 208
QS F+
Sbjct: 825 APNQSAFI 832
>gb|AAF87143.1|AC002423_8 T23E23.16 [Arabidopsis thaliana]
Length = 653
Score = 87.4 bits (215), Expect(2) = 3e-23
Identities = 34/84 (40%), Positives = 61/84 (72%)
Frame = +3
Query: 210 KGQSIVENIHLAQELMRGYSRKRTTPKCTLKIDIRKAYDIVSWGFLHRVLLALNFPIKFV 389
K + ++EN+ LA EL++ Y ++ + +C +KIDI KA++ V W F+ +LL+++FP++FV
Sbjct: 94 KDRLLIENLLLATELVKDYHKESVSSRCAIKIDISKAFNSVQWSFIRNILLSMDFPMEFV 153
Query: 390 EWIMECACSPSYSLKINGGIFGYF 461
WIM C + S+S+++NG + G+F
Sbjct: 154 HWIMLCISTASFSVQVNGELVGFF 177
Score = 46.6 bits (109), Expect(2) = 3e-23
Identities = 19/42 (45%), Positives = 30/42 (71%)
Frame = +2
Query: 86 VGYFRLISCCNVFYHVITKLLAHRLGSILPLLIDQAQSVFVK 211
+ ++R +SCCNV Y +I+K++A+RL +LP I Q+ FVK
Sbjct: 53 ISHYRPLSCCNVIYKIISKIIANRLKMVLPKFIAGNQTAFVK 94
>gb|AAD21699.1| Contains reverse transcriptase domain (rvt) PF|00078 [Arabidopsis
thaliana]
Length = 1253
Score = 82.0 bits (201), Expect(2) = 6e-22
Identities = 34/83 (40%), Positives = 56/83 (67%)
Frame = +3
Query: 213 GQSIVENIHLAQELMRGYSRKRTTPKCTLKIDIRKAYDIVSWGFLHRVLLALNFPIKFVE 392
G+ + EN+ LA EL++GY+R+ P+ LK+D+RKA+D + W F+ L A+ P +FV
Sbjct: 515 GRFLAENVLLATELVQGYNRQNIDPRGMLKVDLRKAFDSIRWDFIISALKAIGIPDRFVY 574
Query: 393 WIMECACSPSYSLKINGGIFGYF 461
WI +C +P++S+ +NG G+F
Sbjct: 575 WITQCISTPTFSVCVNGNTGGFF 597
Score = 47.8 bits (112), Expect(2) = 6e-22
Identities = 30/75 (40%), Positives = 41/75 (54%), Gaps = 4/75 (5%)
Frame = +2
Query: 2 KFFRTGRLLKQANHCIISLIPKSERATSVGYFRLISCCN----VFYHVITKLLAHRLGSI 169
+FF + LLKQ N + LIPK A+ + FR ISC + Y VI +LL +RL +
Sbjct: 441 EFFTSSVLLKQWNATTLVLIPKITNASKMNDFRPISCNDFGPITLYKVIARLLTNRLQCL 500
Query: 170 LPLLIDQAQSVFVKG 214
L +I QS F+ G
Sbjct: 501 LSQVISPFQSAFLPG 515
>emb|CAD22562.1| reverse transcriptase [Brassica rapa subsp. oleifera]
Length = 137
Score = 85.5 bits (210), Expect(2) = 8e-22
Identities = 39/84 (46%), Positives = 55/84 (65%)
Frame = +3
Query: 210 KGQSIVENIHLAQELMRGYSRKRTTPKCTLKIDIRKAYDIVSWGFLHRVLLALNFPIKFV 389
KG+S+ EN+ LA EL+R Y++ LK+DIRKA+D V W F+ ++L A FP FV
Sbjct: 41 KGRSLGENVLLASELIRDYNKSSCLRSSMLKVDIRKAFDTVCWDFVIKILRAQGFPPLFV 100
Query: 390 EWIMECACSPSYSLKINGGIFGYF 461
WI EC SP +S+ +NG + G+F
Sbjct: 101 SWIQECITSPRFSVALNGELAGFF 124
Score = 43.9 bits (102), Expect(2) = 8e-22
Identities = 20/40 (50%), Positives = 28/40 (70%)
Frame = +2
Query: 95 FRLISCCNVFYHVITKLLAHRLGSILPLLIDQAQSVFVKG 214
FR ISCCN+ Y VI+K++A+RL IL + Q+ F+KG
Sbjct: 3 FRPISCCNIVYKVISKIIANRLKPILRDCVSPNQAAFLKG 42
>gb|AAD32866.1|AC005489_4 F14N23.4 [Arabidopsis thaliana]
Length = 1161
Score = 77.8 bits (190), Expect(2) = 3e-21
Identities = 36/84 (42%), Positives = 52/84 (61%)
Frame = +3
Query: 210 KGQSIVENIHLAQELMRGYSRKRTTPKCTLKIDIRKAYDIVSWGFLHRVLLALNFPIKFV 389
KG+ + EN+ LA EL+ + T + L++DI KAYD V+W FL +L AL+ P+ F+
Sbjct: 604 KGRLLCENVLLASELVDNFEADGETTRGCLQVDISKAYDNVNWEFLINILKALDLPLVFI 663
Query: 390 EWIMECACSPSYSLKINGGIFGYF 461
WI C S SYS+ NG + G+F
Sbjct: 664 HWIWVCISSASYSIAFNGELIGFF 687
Score = 49.7 bits (117), Expect(2) = 3e-21
Identities = 25/71 (35%), Positives = 39/71 (54%)
Frame = +2
Query: 2 KFFRTGRLLKQANHCIISLIPKSERATSVGYFRLISCCNVFYHVITKLLAHRLGSILPLL 181
+FF +G L + N I+LIPK A + FR ++CC Y VIT++++ RL +
Sbjct: 535 EFFISGNLPRGFNATAITLIPKVTGADRLTQFRPVACCTTIYKVITRIISRRLKLFIDQA 594
Query: 182 IDQAQSVFVKG 214
+ Q F+KG
Sbjct: 595 VQANQVGFIKG 605
>dbj|BAF00918.1| putative reverse transcriptase [Arabidopsis thaliana]
Length = 910
Score = 77.8 bits (190), Expect(2) = 3e-21
Identities = 36/84 (42%), Positives = 52/84 (61%)
Frame = +3
Query: 210 KGQSIVENIHLAQELMRGYSRKRTTPKCTLKIDIRKAYDIVSWGFLHRVLLALNFPIKFV 389
KG+ + EN+ LA EL+ + T + L++DI KAYD V+W FL +L AL+ P+ F+
Sbjct: 561 KGRLLCENVLLASELVDNFEADGETTRGCLQVDISKAYDNVNWEFLINILKALDLPLVFI 620
Query: 390 EWIMECACSPSYSLKINGGIFGYF 461
WI C S SYS+ NG + G+F
Sbjct: 621 HWIWVCISSASYSIAFNGELIGFF 644
Score = 49.7 bits (117), Expect(2) = 3e-21
Identities = 25/71 (35%), Positives = 39/71 (54%)
Frame = +2
Query: 2 KFFRTGRLLKQANHCIISLIPKSERATSVGYFRLISCCNVFYHVITKLLAHRLGSILPLL 181
+FF +G L + N I+LIPK A + FR ++CC Y VIT++++ RL +
Sbjct: 492 EFFISGNLPRGFNATAITLIPKVTGADRLTQFRPVACCTTIYKVITRIISRRLKLFIDQA 551
Query: 182 IDQAQSVFVKG 214
+ Q F+KG
Sbjct: 552 VQANQVGFIKG 562