BLASTX nr result
ID: Catharanthus23_contig00033349
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Catharanthus23_contig00033349
(436 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|EMJ00096.1| hypothetical protein PRUPE_ppa015748mg, partial [... 62 1e-09
gb|EMJ27906.1| hypothetical protein PRUPE_ppa020120mg [Prunus pe... 55 3e-07
gb|AAM18736.1|AC092548_14 putative reverse transcriptase [Oryza ... 58 2e-06
gb|EEE50824.1| hypothetical protein OsJ_31232 [Oryza sativa Japo... 58 2e-06
gb|ABO80476.1| RNA-directed DNA polymerase , related [Medicago t... 58 2e-06
gb|AAP53315.2| retrotransposon protein, putative, unclassified [... 58 2e-06
gb|ABA98491.1| retrotransposon protein, putative, unclassified [... 57 3e-06
gb|EMJ28511.1| hypothetical protein PRUPE_ppa016553mg [Prunus pe... 50 3e-06
emb|CAB75484.1| putative protein [Arabidopsis thaliana] 49 3e-06
gb|AAD32950.1| putative non-LTR retroelement reverse transcripta... 54 4e-06
ref|XP_004301927.1| PREDICTED: putative ribonuclease H protein A... 56 6e-06
gb|AAD21778.1| putative non-LTR retroelement reverse transcripta... 48 6e-06
emb|CCA66054.1| hypothetical protein [Beta vulgaris subsp. vulga... 55 7e-06
ref|XP_004295829.1| PREDICTED: uncharacterized protein LOC101302... 55 1e-05
>gb|EMJ00096.1| hypothetical protein PRUPE_ppa015748mg, partial [Prunus persica]
Length = 949
Score = 62.4 bits (150), Expect(2) = 1e-09
Identities = 30/79 (37%), Positives = 52/79 (65%), Gaps = 3/79 (3%)
Frame = +3
Query: 138 MIHGVKIIRENPAISHLMYADNLVVFCRADIGE---TKFTV*TNSEWSGQLINFNKSLVN 308
++HG+K+ +P +SHL++AD+ ++FC+A GE K + ++ SGQ +NF+KS +
Sbjct: 468 LLHGIKVSSSSPPLSHLLFADDSILFCKASEGEMDMVKHVLDLYAKGSGQQVNFDKSSLF 527
Query: 309 FS*NVEQGTHDQVWQLLNM 365
FS N Q T D++ + LN+
Sbjct: 528 FSTNCSQETRDRLARSLNI 546
Score = 25.8 bits (55), Expect(2) = 1e-09
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +2
Query: 5 LVNGYPYCFVKNSRGIRQG 61
+VNG P F++ RG+RQG
Sbjct: 423 MVNGTPTGFIQPQRGLRQG 441
>gb|EMJ27906.1| hypothetical protein PRUPE_ppa020120mg [Prunus persica]
Length = 1011
Score = 55.1 bits (131), Expect(2) = 3e-07
Identities = 32/84 (38%), Positives = 46/84 (54%)
Frame = +3
Query: 114 IGTSKADGMIHGVKIIRENPAISHLMYADNLVVFCRADIGETKFTV*TNSEWSGQLINFN 293
I + +G + GV I R PAISHL +AD+ V+F RA++ + SGQ +NF
Sbjct: 558 IAQKEREGFLKGVSICRGAPAISHLFFADDSVLFARANMADC-------MRASGQQVNFQ 610
Query: 294 KSLVNFS*NVEQGTHDQVWQLLNM 365
KS V FS NV +G + Q + +
Sbjct: 611 KSAVCFSKNVHRGDQLMLAQFMGI 634
Score = 24.6 bits (52), Expect(2) = 3e-07
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +2
Query: 5 LVNGYPYCFVKNSRGIRQG 61
++NG P+ F+ SRG+ QG
Sbjct: 521 VINGTPHGFLHPSRGLHQG 539
>gb|AAM18736.1|AC092548_14 putative reverse transcriptase [Oryza sativa Japonica Group]
Length = 1509
Score = 57.8 bits (138), Expect = 2e-06
Identities = 33/97 (34%), Positives = 55/97 (56%), Gaps = 3/97 (3%)
Frame = +3
Query: 114 IGTSKADGMIHGVKIIRENPAISHLMYADNLVVFCRADIGET---KFTV*TNSEWSGQLI 284
+ ++ +G +HG++I + P++SHL++AD+ ++ CRA+ GE + + E SGQ+I
Sbjct: 856 LSKTEEEGRLHGIRICQGAPSVSHLLFADDSLILCRANGGEAQQLQTILQIYEECSGQVI 915
Query: 285 NFNKSLVNFS*NVEQGTHDQVWQLLNMKDCKTRKSTL 395
N +KS V FS N V LNM+ T + L
Sbjct: 916 NKDKSAVMFSPNTSSLEKGAVMAALNMQRETTNEKYL 952
>gb|EEE50824.1| hypothetical protein OsJ_31232 [Oryza sativa Japonica Group]
Length = 1594
Score = 57.8 bits (138), Expect = 2e-06
Identities = 33/97 (34%), Positives = 55/97 (56%), Gaps = 3/97 (3%)
Frame = +3
Query: 114 IGTSKADGMIHGVKIIRENPAISHLMYADNLVVFCRADIGET---KFTV*TNSEWSGQLI 284
+ ++ +G +HG++I + P++SHL++AD+ ++ CRA+ GE + + E SGQ+I
Sbjct: 884 LSKTEEEGRLHGIRICQGAPSVSHLLFADDSLILCRANGGEAQQLQTILQIYEECSGQVI 943
Query: 285 NFNKSLVNFS*NVEQGTHDQVWQLLNMKDCKTRKSTL 395
N +KS V FS N V LNM+ T + L
Sbjct: 944 NKDKSAVMFSPNTSSLEKGAVMAALNMQRETTNEKYL 980
>gb|ABO80476.1| RNA-directed DNA polymerase , related [Medicago truncatula]
Length = 405
Score = 57.8 bits (138), Expect = 2e-06
Identities = 31/81 (38%), Positives = 49/81 (60%), Gaps = 3/81 (3%)
Frame = +3
Query: 135 GMIHGVKIIRENPAISHLMYADNLVVFCRADIGETK---FTV*TNSEWSGQLINFNKSLV 305
G IHGVK+ R P +SHL++ADN +FCRA++ E + + T SGQ IN +KS V
Sbjct: 50 GDIHGVKVCRGAPVVSHLLFADNCFLFCRANVVEAQRLLTILKTYEAASGQEINLSKSEV 109
Query: 306 NFS*NVEQGTHDQVWQLLNMK 368
FS N+ + + +++ ++
Sbjct: 110 FFSRNMSGAAQEDLSRIIGVR 130
>gb|AAP53315.2| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1505
Score = 57.8 bits (138), Expect = 2e-06
Identities = 33/97 (34%), Positives = 55/97 (56%), Gaps = 3/97 (3%)
Frame = +3
Query: 114 IGTSKADGMIHGVKIIRENPAISHLMYADNLVVFCRADIGET---KFTV*TNSEWSGQLI 284
+ ++ +G +HG++I + P++SHL++AD+ ++ CRA+ GE + + E SGQ+I
Sbjct: 852 LSKTEEEGRLHGIRICQGAPSVSHLLFADDSLILCRANGGEAQQLQTILQIYEECSGQVI 911
Query: 285 NFNKSLVNFS*NVEQGTHDQVWQLLNMKDCKTRKSTL 395
N +KS V FS N V LNM+ T + L
Sbjct: 912 NKDKSAVMFSPNTSSLEKGAVMAALNMQRETTNEKYL 948
>gb|ABA98491.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1621
Score = 57.0 bits (136), Expect = 3e-06
Identities = 31/88 (35%), Positives = 52/88 (59%), Gaps = 3/88 (3%)
Frame = +3
Query: 114 IGTSKADGMIHGVKIIRENPAISHLMYADNLVVFCRADIGET---KFTV*TNSEWSGQLI 284
+ ++ +G +HG++I + P++SHL++AD+ ++ CRA+ GE + + E SGQ+I
Sbjct: 911 LSKTEEEGRLHGIRICQGAPSVSHLLFADDSLILCRANGGEAQQLQTILQIYEECSGQVI 970
Query: 285 NFNKSLVNFS*NVEQGTHDQVWQLLNMK 368
N +KS V FS N V LNM+
Sbjct: 971 NKDKSAVMFSPNTSSLEKRAVMAALNMQ 998
>gb|EMJ28511.1| hypothetical protein PRUPE_ppa016553mg [Prunus persica]
Length = 992
Score = 50.1 bits (118), Expect(2) = 3e-06
Identities = 31/87 (35%), Positives = 46/87 (52%), Gaps = 3/87 (3%)
Frame = +3
Query: 114 IGTSKADGMIHGVKIIRENPAISHLMYADNLVVFCRADIGE---TKFTV*TNSEWSGQLI 284
I + +G + GV I R PAISHL +AD+ +F A++ + K + T GQ +
Sbjct: 300 IAQKEREGFLKGVSICRGAPAISHLFFADDSFLFAWANMADCMALKDILDTYERALGQQV 359
Query: 285 NFNKSLVNFS*NVEQGTHDQVWQLLNM 365
NF KS V FS NV +G + Q + +
Sbjct: 360 NFQKSAVCFSKNVHRGDQLMLAQFMGI 386
Score = 26.6 bits (57), Expect(2) = 3e-06
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = +2
Query: 5 LVNGYPYCFVKNSRGIRQG 61
++NG P+ F+ SRG+RQG
Sbjct: 263 VINGTPHGFLHPSRGLRQG 281
>emb|CAB75484.1| putative protein [Arabidopsis thaliana]
Length = 851
Score = 49.3 bits (116), Expect(2) = 3e-06
Identities = 31/87 (35%), Positives = 45/87 (51%), Gaps = 3/87 (3%)
Frame = +3
Query: 114 IGTSKADGMIHGVKIIRENPAISHLMYADNLVVFCRADIGE---TKFTV*TNSEWSGQLI 284
I + G I GV+I PAI+HL +AD+ + FC+A++ K +SGQ I
Sbjct: 276 IKVKASSGDIRGVRIGNGAPAITHLQFADDSLFFCQANVRNCQALKDVFDVYEYYSGQKI 335
Query: 285 NFNKSLVNFS*NVEQGTHDQVWQLLNM 365
N KSL+ F V T ++ LLN+
Sbjct: 336 NVQKSLITFGSRVYGSTQTRLKTLLNI 362
Score = 27.3 bits (59), Expect(2) = 3e-06
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = +2
Query: 5 LVNGYPYCFVKNSRGIRQG 61
L+NG P+ ++ +RGIRQG
Sbjct: 239 LINGSPHGYISPTRGIRQG 257
>gb|AAD32950.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 773
Score = 53.5 bits (127), Expect(2) = 4e-06
Identities = 30/78 (38%), Positives = 45/78 (57%), Gaps = 3/78 (3%)
Frame = +3
Query: 141 IHGVKIIRENPAISHLMYADNLVVFCRADIGETKFTV*T---NSEWSGQLINFNKSLVNF 311
+HG K R PAISHL++A + +VFC+A + E V + SGQ +NF KS + F
Sbjct: 119 LHGFKASRNGPAISHLLFAHDSLVFCKATLEECMTLVNVLKLYEKASGQAVNFQKSAILF 178
Query: 312 S*NVEQGTHDQVWQLLNM 365
++ T +Q+ QLL +
Sbjct: 179 GKGLDFRTSEQLSQLLGI 196
Score = 22.7 bits (47), Expect(2) = 4e-06
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +2
Query: 5 LVNGYPYCFVKNSRGIRQG 61
L+NG P + RGIRQG
Sbjct: 73 LINGQPVRRIIPKRGIRQG 91
>ref|XP_004301927.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Fragaria
vesca subsp. vesca]
Length = 968
Score = 55.8 bits (133), Expect = 6e-06
Identities = 34/86 (39%), Positives = 50/86 (58%), Gaps = 5/86 (5%)
Frame = +3
Query: 132 DGMIHGVKIIRENPAISHLMYADNLVVFCRADIGE---TKFTV*TNSEWSGQLINFNKSL 302
+GMIHGVK + P ISHL++AD+ ++F RA+I E K + +GQ INF KS
Sbjct: 290 EGMIHGVKAAVDAPIISHLLFADDSLLFGRAEIHEAIHVKQCLLLYESAAGQKINFQKSA 349
Query: 303 VNFS*NVEQGTHDQVWQLLN--MKDC 374
+ F ++ T ++ Q+L M DC
Sbjct: 350 IAFGPGLDDQTKLEITQMLGLPMVDC 375
>gb|AAD21778.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1715
Score = 47.8 bits (112), Expect(2) = 6e-06
Identities = 29/100 (29%), Positives = 53/100 (53%), Gaps = 3/100 (3%)
Frame = +3
Query: 87 YCSLCSFQDIGTSKADGMIHGVKIIRENPAISHLMYADNLVVFCRA---DIGETKFTV*T 257
+C+ + ++ + IHG+KI ++ AISHL++AD+ + FCRA +I +
Sbjct: 1008 FCAEVLSNMLRKAEVNKQIHGMKITKDCLAISHLLFADDSLFFCRASNQNIEQLALIFKK 1067
Query: 258 NSEWSGQLINFNKSLVNFS*NVEQGTHDQVWQLLNMKDCK 377
E SGQ IN+ KS + F + ++ +LL + + +
Sbjct: 1068 YEEASGQKINYAKSSIIFGQKIPTMRRQRLHRLLGIDNVR 1107
Score = 27.7 bits (60), Expect(2) = 6e-06
Identities = 16/30 (53%), Positives = 18/30 (60%)
Frame = +2
Query: 5 LVNGYPYCFVKNSRGIRQGTRCPRPCLLLF 94
L+NG PY + SRGIRQG P L LF
Sbjct: 980 LINGSPYGKIFPSRGIRQGDPL-SPYLFLF 1008
>emb|CCA66054.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1355
Score = 55.5 bits (132), Expect = 7e-06
Identities = 31/82 (37%), Positives = 47/82 (57%), Gaps = 3/82 (3%)
Frame = +3
Query: 132 DGMIHGVKIIRENPAISHLMYADNLVVFCRADIGETKFTV*TNSEW---SGQLINFNKSL 302
D +HG K R P ISHL +AD+ ++F RA+ E V +++ SGQ IN+ KS
Sbjct: 665 DKQLHGAKASRSGPEISHLFFADDSLLFTRANRQECTIIVDILNQYELASGQKINYEKSE 724
Query: 303 VNFS*NVEQGTHDQVWQLLNMK 368
V++S V D++ +LNM+
Sbjct: 725 VSYSRGVSVSQKDELTNILNMR 746
>ref|XP_004295829.1| PREDICTED: uncharacterized protein LOC101302635 [Fragaria vesca
subsp. vesca]
Length = 913
Score = 55.1 bits (131), Expect = 1e-05
Identities = 33/86 (38%), Positives = 50/86 (58%), Gaps = 5/86 (5%)
Frame = +3
Query: 132 DGMIHGVKIIRENPAISHLMYADNLVVFCRADIGE---TKFTV*TNSEWSGQLINFNKSL 302
+GMIHGVK + P ISH+++AD+ ++F RA+I E K + +GQ INF KS
Sbjct: 220 EGMIHGVKAAVDAPIISHMLFADDSLLFGRAEIHEAIHVKQCLLLYESAAGQKINFQKSA 279
Query: 303 VNFS*NVEQGTHDQVWQLLN--MKDC 374
+ F ++ T ++ Q+L M DC
Sbjct: 280 IAFGPGLDDQTKLEITQMLGVPMVDC 305