BLASTX nr result
ID: Catharanthus23_contig00032516
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Catharanthus23_contig00032516
(256 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|EXB73293.1| Retrovirus-related Pol polyprotein from transposo... 56 1e-14
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-... 59 2e-13
ref|NP_001065797.2| Os11g0157000 [Oryza sativa Japonica Group] g... 59 3e-13
gb|AAM08562.1|AC092749_15 Putative retroelement [Oryza sativa Ja... 58 7e-13
emb|CAJ86151.1| H0413E07.4 [Oryza sativa Indica Group] 58 9e-13
emb|CAJ86192.1| H0306F03.15 [Oryza sativa Indica Group] 58 9e-13
emb|CAD41912.2| OSJNBa0033G05.13 [Oryza sativa Japonica Group] 57 1e-12
gb|AAX96781.1| retrotransposon protein, putative, Ty1-copia sub-... 54 2e-12
gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group] 55 4e-12
emb|CAH65740.1| OSIGBa0127D24.3 [Oryza sativa Indica Group] 59 5e-12
gb|AAT44282.1| putative polyprotein [Oryza sativa Japonica Group] 55 6e-12
emb|CAD40363.2| OSJNBa0093P23.9 [Oryza sativa Japonica Group] 54 6e-12
emb|CAH66022.1| OSIGBa0105O19.1 [Oryza sativa Indica Group] 54 6e-12
emb|CAN61272.1| hypothetical protein VITISV_039063 [Vitis vinifera] 50 8e-12
emb|CAN65222.1| hypothetical protein VITISV_038665 [Vitis vinifera] 50 9e-12
ref|XP_006651032.1| PREDICTED: uncharacterized protein LOC102707... 53 2e-11
gb|AAD32759.1| putative retroelement pol polyprotein [Arabidopsi... 54 6e-11
gb|AAD19773.1| putative retroelement pol polyprotein [Arabidopsi... 54 6e-11
emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis] 54 7e-11
gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subc... 49 1e-10
>gb|EXB73293.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Morus
notabilis]
Length = 1822
Score = 55.8 bits (133), Expect(2) = 1e-14
Identities = 21/41 (51%), Positives = 33/41 (80%)
Frame = +1
Query: 1 NGVAERMNRTIMDKVRCLMVSLGVPKPFWGEAVSMAVSLID 123
NG+AERMNRT++++VRC+++ +PK FWGE V+ A L++
Sbjct: 48 NGLAERMNRTLLERVRCMLIEASLPKRFWGEVVNTAAYLVN 88
Score = 48.9 bits (115), Expect(2) = 1e-14
Identities = 19/27 (70%), Positives = 24/27 (88%)
Frame = +3
Query: 174 NMSNLRVFGCVAFAHQKDGKLDPRSRK 254
N NL+VFGC A+AHQK+GKLDPR++K
Sbjct: 110 NFENLKVFGCTAYAHQKEGKLDPRAKK 136
>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
sativa Japonica Group] gi|77548751|gb|ABA91548.1|
retrotransposon protein, putative, Ty1-copia subclass
[Oryza sativa Japonica Group]
Length = 2340
Score = 58.5 bits (140), Expect(2) = 2e-13
Identities = 27/41 (65%), Positives = 32/41 (78%)
Frame = +1
Query: 1 NGVAERMNRTIMDKVRCLMVSLGVPKPFWGEAVSMAVSLID 123
NGVAERMNRTI+ K RCL+ + G+PK FW EAVS A LI+
Sbjct: 800 NGVAERMNRTIISKARCLLSNAGLPKQFWAEAVSTACYLIN 840
Score = 42.0 bits (97), Expect(2) = 2e-13
Identities = 18/28 (64%), Positives = 23/28 (82%)
Frame = +3
Query: 171 ANMSNLRVFGCVAFAHQKDGKLDPRSRK 254
AN S+LRVFGC A+AH +GKL+PR+ K
Sbjct: 861 ANYSDLRVFGCTAYAHVDNGKLEPRAIK 888
>ref|NP_001065797.2| Os11g0157000 [Oryza sativa Japonica Group]
gi|255679807|dbj|BAF27642.2| Os11g0157000 [Oryza sativa
Japonica Group]
Length = 1601
Score = 58.5 bits (140), Expect(2) = 3e-13
Identities = 27/41 (65%), Positives = 32/41 (78%)
Frame = +1
Query: 1 NGVAERMNRTIMDKVRCLMVSLGVPKPFWGEAVSMAVSLID 123
NGVAERMNRTI+ K RCL+ + G+PK FW EAVS A LI+
Sbjct: 593 NGVAERMNRTIISKARCLLSNAGLPKQFWAEAVSTACYLIN 633
Score = 42.0 bits (97), Expect(2) = 3e-13
Identities = 18/28 (64%), Positives = 23/28 (82%)
Frame = +3
Query: 171 ANMSNLRVFGCVAFAHQKDGKLDPRSRK 254
AN S+LRVFGC A+AH +GKL+PR+ K
Sbjct: 654 ANYSDLRVFGCTAYAHVDNGKLEPRAIK 681
>gb|AAM08562.1|AC092749_15 Putative retroelement [Oryza sativa Japonica Group]
gi|20087076|gb|AAM10749.1|AC112514_2 Putative
retroelement [Oryza sativa Japonica Group]
Length = 1225
Score = 58.2 bits (139), Expect(2) = 7e-13
Identities = 30/61 (49%), Positives = 37/61 (60%)
Frame = +1
Query: 1 NGVAERMNRTIMDKVRCLMVSLGVPKPFWGEAVSMAVSLIDPFYSRKL*DSYRTLVWLTC 180
NGVAERMNRTI+ K RC++ + G+PK FW EAVS A LI+ S + VW
Sbjct: 554 NGVAERMNRTIISKARCMLSNAGLPKQFWAEAVSTACYLINRSPSYAIDKKTPIKVWSGS 613
Query: 181 P 183
P
Sbjct: 614 P 614
Score = 40.8 bits (94), Expect(2) = 7e-13
Identities = 17/28 (60%), Positives = 23/28 (82%)
Frame = +3
Query: 171 ANMSNLRVFGCVAFAHQKDGKLDPRSRK 254
AN S+LRVFGC+A+AH + KL+PR+ K
Sbjct: 615 ANYSDLRVFGCIAYAHVDNSKLEPRAIK 642
>emb|CAJ86151.1| H0413E07.4 [Oryza sativa Indica Group]
Length = 1205
Score = 57.8 bits (138), Expect(2) = 9e-13
Identities = 26/41 (63%), Positives = 32/41 (78%)
Frame = +1
Query: 1 NGVAERMNRTIMDKVRCLMVSLGVPKPFWGEAVSMAVSLID 123
NGVAERMNRTI+ K RC++ + G+PK FW EAVS A LI+
Sbjct: 578 NGVAERMNRTIISKARCMLSNAGLPKQFWAEAVSTACYLIN 618
Score = 40.8 bits (94), Expect(2) = 9e-13
Identities = 17/28 (60%), Positives = 23/28 (82%)
Frame = +3
Query: 171 ANMSNLRVFGCVAFAHQKDGKLDPRSRK 254
AN S+L+VFGC A+AH +GKL+PR+ K
Sbjct: 639 ANYSDLKVFGCTAYAHVDNGKLEPRTIK 666
>emb|CAJ86192.1| H0306F03.15 [Oryza sativa Indica Group]
Length = 1037
Score = 57.8 bits (138), Expect(2) = 9e-13
Identities = 26/41 (63%), Positives = 32/41 (78%)
Frame = +1
Query: 1 NGVAERMNRTIMDKVRCLMVSLGVPKPFWGEAVSMAVSLID 123
NGVAERMNRTI+ K RC++ + G+PK FW EAVS A LI+
Sbjct: 410 NGVAERMNRTIISKARCMLSNAGLPKQFWAEAVSTACYLIN 450
Score = 40.8 bits (94), Expect(2) = 9e-13
Identities = 17/28 (60%), Positives = 23/28 (82%)
Frame = +3
Query: 171 ANMSNLRVFGCVAFAHQKDGKLDPRSRK 254
AN S+L+VFGC A+AH +GKL+PR+ K
Sbjct: 471 ANYSDLKVFGCTAYAHVDNGKLEPRTIK 498
>emb|CAD41912.2| OSJNBa0033G05.13 [Oryza sativa Japonica Group]
Length = 1181
Score = 57.4 bits (137), Expect(2) = 1e-12
Identities = 28/49 (57%), Positives = 35/49 (71%), Gaps = 2/49 (4%)
Frame = +1
Query: 1 NGVAERMNRTIMDKVRCLMVSLGVPKPFWGEAVSMAVSLID--PFYSRK 141
NGVAERMNR I+ K RC++ + G+PK FW EAVS A LI+ P Y+ K
Sbjct: 593 NGVAERMNRIIISKARCMLSNAGLPKQFWAEAVSTACYLINRSPSYANK 641
Score = 40.8 bits (94), Expect(2) = 1e-12
Identities = 17/28 (60%), Positives = 23/28 (82%)
Frame = +3
Query: 171 ANMSNLRVFGCVAFAHQKDGKLDPRSRK 254
AN S+L+VFGC A+AH +GKL+PR+ K
Sbjct: 653 ANYSDLKVFGCTAYAHVDNGKLEPRAIK 680
>gb|AAX96781.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
sativa Japonica Group] gi|77549746|gb|ABA92543.1|
retrotransposon protein, putative, Ty1-copia subclass,
expressed [Oryza sativa Japonica Group]
Length = 1170
Score = 54.3 bits (129), Expect(2) = 2e-12
Identities = 25/41 (60%), Positives = 31/41 (75%)
Frame = +1
Query: 1 NGVAERMNRTIMDKVRCLMVSLGVPKPFWGEAVSMAVSLID 123
NGVAERM RTI+ K RC++ +G+PK FW EAVS A LI+
Sbjct: 628 NGVAERMKRTIISKSRCMLPYVGLPKQFWAEAVSTACYLIN 668
Score = 43.1 bits (100), Expect(2) = 2e-12
Identities = 18/28 (64%), Positives = 24/28 (85%)
Frame = +3
Query: 171 ANMSNLRVFGCVAFAHQKDGKLDPRSRK 254
AN S+LRVFGC+A+AH +GKL+PR+ K
Sbjct: 689 ANYSDLRVFGCIAYAHVDNGKLEPRAIK 716
>gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1241
Score = 55.5 bits (132), Expect(2) = 4e-12
Identities = 25/41 (60%), Positives = 31/41 (75%)
Frame = +1
Query: 1 NGVAERMNRTIMDKVRCLMVSLGVPKPFWGEAVSMAVSLID 123
NGVAERMNRTI+ K RC++ + +PK FW EAVS A LI+
Sbjct: 502 NGVAERMNRTIISKARCMLSNASLPKQFWAEAVSTACYLIN 542
Score = 40.8 bits (94), Expect(2) = 4e-12
Identities = 17/25 (68%), Positives = 21/25 (84%)
Frame = +3
Query: 171 ANMSNLRVFGCVAFAHQKDGKLDPR 245
AN S+LRVFGC A+AH +GKL+PR
Sbjct: 563 ANYSDLRVFGCTAYAHVDNGKLEPR 587
>emb|CAH65740.1| OSIGBa0127D24.3 [Oryza sativa Indica Group]
Length = 1009
Score = 58.9 bits (141), Expect(2) = 5e-12
Identities = 30/61 (49%), Positives = 38/61 (62%)
Frame = +1
Query: 1 NGVAERMNRTIMDKVRCLMVSLGVPKPFWGEAVSMAVSLIDPFYSRKL*DSYRTLVWLTC 180
NGVAERMNRTI+ K RC++ + G+PK FW EAVS A LI+ S + VW +
Sbjct: 414 NGVAERMNRTIISKARCMLSNAGLPKQFWAEAVSTACYLINRSPSYAIDKKTPIEVWSSS 473
Query: 181 P 183
P
Sbjct: 474 P 474
Score = 37.4 bits (85), Expect(2) = 5e-12
Identities = 16/28 (57%), Positives = 21/28 (75%)
Frame = +3
Query: 171 ANMSNLRVFGCVAFAHQKDGKLDPRSRK 254
A S+LRVF C A+AH +GKL+PR+ K
Sbjct: 475 AKYSDLRVFSCTAYAHVDNGKLEPRAIK 502
>gb|AAT44282.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1243
Score = 55.5 bits (132), Expect(2) = 6e-12
Identities = 29/62 (46%), Positives = 36/62 (58%)
Frame = +1
Query: 1 NGVAERMNRTIMDKVRCLMVSLGVPKPFWGEAVSMAVSLIDPFYSRKL*DSYRTLVWLTC 180
N VAERMNRTI+ K RC++ + G+PK FW EAVS A LI+ + VW
Sbjct: 565 NDVAERMNRTIISKARCMLSNAGLPKQFWAEAVSTACYLINRSPGYAIDKKTPIEVWSGS 624
Query: 181 PT 186
PT
Sbjct: 625 PT 626
Score = 40.4 bits (93), Expect(2) = 6e-12
Identities = 17/27 (62%), Positives = 22/27 (81%)
Frame = +3
Query: 174 NMSNLRVFGCVAFAHQKDGKLDPRSRK 254
N S+LRVFGC A+AH +GKL+PR+ K
Sbjct: 627 NYSDLRVFGCTAYAHVDNGKLEPRAIK 653
>emb|CAD40363.2| OSJNBa0093P23.9 [Oryza sativa Japonica Group]
Length = 944
Score = 53.9 bits (128), Expect(2) = 6e-12
Identities = 24/41 (58%), Positives = 30/41 (73%)
Frame = +1
Query: 1 NGVAERMNRTIMDKVRCLMVSLGVPKPFWGEAVSMAVSLID 123
NGVAERMNRTI+ K RC++ + G+PK FW AVS LI+
Sbjct: 421 NGVAERMNRTIISKARCMLSNAGLPKQFWAAAVSTTCYLIN 461
Score = 42.0 bits (97), Expect(2) = 6e-12
Identities = 18/28 (64%), Positives = 23/28 (82%)
Frame = +3
Query: 171 ANMSNLRVFGCVAFAHQKDGKLDPRSRK 254
AN S+LRVFGC A+AH +GKL+PR+ K
Sbjct: 482 ANYSDLRVFGCTAYAHVDNGKLEPRAIK 509
>emb|CAH66022.1| OSIGBa0105O19.1 [Oryza sativa Indica Group]
Length = 944
Score = 53.9 bits (128), Expect(2) = 6e-12
Identities = 24/41 (58%), Positives = 30/41 (73%)
Frame = +1
Query: 1 NGVAERMNRTIMDKVRCLMVSLGVPKPFWGEAVSMAVSLID 123
NGVAERMNRTI+ K RC++ + G+PK FW AVS LI+
Sbjct: 421 NGVAERMNRTIISKARCMLSNAGLPKQFWAAAVSTTCYLIN 461
Score = 42.0 bits (97), Expect(2) = 6e-12
Identities = 18/28 (64%), Positives = 23/28 (82%)
Frame = +3
Query: 171 ANMSNLRVFGCVAFAHQKDGKLDPRSRK 254
AN S+LRVFGC A+AH +GKL+PR+ K
Sbjct: 482 ANYSDLRVFGCTAYAHVDNGKLEPRAIK 509
>emb|CAN61272.1| hypothetical protein VITISV_039063 [Vitis vinifera]
Length = 1643
Score = 50.4 bits (119), Expect(3) = 8e-12
Identities = 20/41 (48%), Positives = 30/41 (73%)
Frame = +1
Query: 1 NGVAERMNRTIMDKVRCLMVSLGVPKPFWGEAVSMAVSLID 123
NGVAERMN+T++ + RC+ + G+ K FW EAV+ A L++
Sbjct: 905 NGVAERMNQTLVQRARCMRIDAGLSKKFWAEAVNTAAYLVN 945
Score = 41.2 bits (95), Expect(3) = 8e-12
Identities = 16/28 (57%), Positives = 22/28 (78%)
Frame = +3
Query: 171 ANMSNLRVFGCVAFAHQKDGKLDPRSRK 254
+N S L++FGC A+AH DGKL+PR+ K
Sbjct: 966 SNYSGLKIFGCPAYAHVSDGKLEPRAMK 993
Score = 23.1 bits (48), Expect(3) = 8e-12
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = +2
Query: 122 TPFTAVNFRTLIELWCG 172
+P TA++F+T E+W G
Sbjct: 947 SPSTAIDFKTPQEVWSG 963
>emb|CAN65222.1| hypothetical protein VITISV_038665 [Vitis vinifera]
Length = 1562
Score = 50.4 bits (119), Expect(3) = 9e-12
Identities = 20/41 (48%), Positives = 30/41 (73%)
Frame = +1
Query: 1 NGVAERMNRTIMDKVRCLMVSLGVPKPFWGEAVSMAVSLID 123
NGVAERMN+T++ + RC+ + G+ K FW EAV+ A L++
Sbjct: 692 NGVAERMNQTLVQRARCMRIDAGLSKKFWAEAVNTAAYLVN 732
Score = 41.2 bits (95), Expect(3) = 9e-12
Identities = 16/28 (57%), Positives = 22/28 (78%)
Frame = +3
Query: 171 ANMSNLRVFGCVAFAHQKDGKLDPRSRK 254
+N S L++FGC A+AH DGKL+PR+ K
Sbjct: 753 SNYSGLKIFGCPAYAHVSDGKLEPRAMK 780
Score = 23.1 bits (48), Expect(3) = 9e-12
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = +2
Query: 122 TPFTAVNFRTLIELWCG 172
+P TA++F+T E+W G
Sbjct: 734 SPSTAIDFKTPQEVWSG 750
>ref|XP_006651032.1| PREDICTED: uncharacterized protein LOC102707106 [Oryza brachyantha]
Length = 1773
Score = 53.1 bits (126), Expect(2) = 2e-11
Identities = 23/41 (56%), Positives = 30/41 (73%)
Frame = +1
Query: 1 NGVAERMNRTIMDKVRCLMVSLGVPKPFWGEAVSMAVSLID 123
NGV ERMNRTI+ K RC++ + G+P+ FW EA S A LI+
Sbjct: 532 NGVVERMNRTIISKARCMLSNAGLPRRFWAEAASTACYLIN 572
Score = 40.8 bits (94), Expect(2) = 2e-11
Identities = 17/28 (60%), Positives = 23/28 (82%)
Frame = +3
Query: 171 ANMSNLRVFGCVAFAHQKDGKLDPRSRK 254
AN S+L+VFGC A+AH +GKL+PR+ K
Sbjct: 593 ANYSDLKVFGCTAYAHVDNGKLEPRAIK 620
>gb|AAD32759.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1356
Score = 53.5 bits (127), Expect(2) = 6e-11
Identities = 25/41 (60%), Positives = 30/41 (73%)
Frame = +1
Query: 1 NGVAERMNRTIMDKVRCLMVSLGVPKPFWGEAVSMAVSLID 123
NGVAERMNRTIM+KVR ++ G+PK FW EA V LI+
Sbjct: 599 NGVAERMNRTIMEKVRSMLSDSGLPKRFWAEATHTTVLLIN 639
Score = 38.9 bits (89), Expect(2) = 6e-11
Identities = 16/25 (64%), Positives = 20/25 (80%)
Frame = +3
Query: 180 SNLRVFGCVAFAHQKDGKLDPRSRK 254
S LR +GCVAF H DGKL+PR++K
Sbjct: 663 SYLRRYGCVAFVHTDDGKLEPRAKK 687
>gb|AAD19773.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1335
Score = 53.9 bits (128), Expect(2) = 6e-11
Identities = 25/41 (60%), Positives = 31/41 (75%)
Frame = +1
Query: 1 NGVAERMNRTIMDKVRCLMVSLGVPKPFWGEAVSMAVSLID 123
NG+AER+NRTIMDKVR ++ G+ K FW EA S AV LI+
Sbjct: 575 NGIAERLNRTIMDKVRSMLSRSGMEKKFWAEAASTAVYLIN 615
Score = 38.5 bits (88), Expect(2) = 6e-11
Identities = 15/27 (55%), Positives = 22/27 (81%)
Frame = +3
Query: 174 NMSNLRVFGCVAFAHQKDGKLDPRSRK 254
++S+LR FGC+A+ H GKL+PRS+K
Sbjct: 637 DLSSLRKFGCLAYIHADQGKLNPRSKK 663
>emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis]
Length = 1334
Score = 53.5 bits (127), Expect(3) = 7e-11
Identities = 21/41 (51%), Positives = 33/41 (80%)
Frame = +1
Query: 1 NGVAERMNRTIMDKVRCLMVSLGVPKPFWGEAVSMAVSLID 123
NG+AERMNRT++DK RC++++ +P+ FW EAV+ A L++
Sbjct: 583 NGLAERMNRTLVDKTRCMLINSKLPRSFWAEAVNTASYLVN 623
Score = 36.6 bits (83), Expect(3) = 7e-11
Identities = 16/28 (57%), Positives = 19/28 (67%)
Frame = +3
Query: 171 ANMSNLRVFGCVAFAHQKDGKLDPRSRK 254
AN NLRVFGC A+ H GKL+ R+ K
Sbjct: 644 ANYQNLRVFGCPAYLHINQGKLEARALK 671
Score = 21.6 bits (44), Expect(3) = 7e-11
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = +2
Query: 122 TPFTAVNFRTLIELWCG 172
+P +A+ F+T ELW G
Sbjct: 625 SPSSAIGFKTPEELWNG 641
>gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1312
Score = 49.3 bits (116), Expect(2) = 1e-10
Identities = 22/41 (53%), Positives = 28/41 (68%)
Frame = +1
Query: 1 NGVAERMNRTIMDKVRCLMVSLGVPKPFWGEAVSMAVSLID 123
NGVAERMN I+ K RC++ + +PK FW EAVS LI+
Sbjct: 628 NGVAERMNMAIISKARCMLSNADLPKQFWAEAVSTTCYLIN 668
Score = 42.0 bits (97), Expect(2) = 1e-10
Identities = 18/28 (64%), Positives = 23/28 (82%)
Frame = +3
Query: 171 ANMSNLRVFGCVAFAHQKDGKLDPRSRK 254
AN S+LRVFGC A+AH +GKL+PR+ K
Sbjct: 689 ANYSDLRVFGCTAYAHVDNGKLEPRAIK 716