BLASTX nr result
ID: Catharanthus23_contig00032209
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Catharanthus23_contig00032209
(269 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAP16635.1| polyprotein [Musa acuminata subsp. malaccensis] 60 2e-10
emb|CAP16632.1| polyprotein [Musa acuminata subsp. malaccensis] 60 3e-10
emb|CAP16638.1| polyprotein [Musa acuminata subsp. malaccensis] 59 3e-10
emb|CAP16639.1| polyprotein [Musa acuminata subsp. malaccensis] 57 9e-10
emb|CAP16631.1| polyprotein [Musa acuminata subsp. malaccensis] 56 3e-09
emb|CAP16637.1| polyprotein [Musa acuminata subsp. malaccensis] 55 3e-09
emb|CAP16633.1| polyprotein [Musa acuminata subsp. malaccensis] 58 4e-09
emb|CAP16634.1| polyprotein [Musa acuminata subsp. malaccensis] 55 4e-09
emb|CAP16628.1| polyprotein [Musa acuminata subsp. malaccensis] 57 6e-09
emb|CAP16636.1| polyprotein [Musa acuminata subsp. malaccensis] 55 6e-09
emb|CAP16629.1| polyprotein [Musa acuminata subsp. malaccensis] 53 7e-09
dbj|BAC05657.1| putatitive retrotransposon Cinful-1 [Oryza sativ... 50 1e-08
emb|CAD39844.2| OSJNBb0072N21.13 [Oryza sativa Japonica Group] g... 50 1e-08
gb|AAN31788.1| Putative polyprotein [Oryza sativa Japonica Group... 45 1e-08
gb|ABA98055.1| retrotransposon protein, putative, unclassified [... 48 1e-08
gb|ABF98840.1| retrotransposon protein, putative, unclassified [... 50 1e-08
gb|AAK71558.1|AC087852_18 putative gag-pol protein precursor [Or... 50 1e-08
emb|CCI55289.1| PH01B001G05.12 [Phyllostachys edulis] 55 2e-08
gb|AGX45500.1| reverse transcriptase, partial [Prunus salicina] 52 2e-08
gb|AAU10826.1| putative polyprotein [Oryza sativa Japonica Group] 49 2e-08
>emb|CAP16635.1| polyprotein [Musa acuminata subsp. malaccensis]
Length = 110
Score = 59.7 bits (143), Expect(2) = 2e-10
Identities = 28/49 (57%), Positives = 38/49 (77%), Gaps = 2/49 (4%)
Frame = +3
Query: 78 TAFVTDDSIFYYTRMPFRLKNAGA--QQMVNNLFSNQINRNMEV*IDDL 218
TAF+TD +++Y MPF LKNAGA Q+ VN +F++QI RNMEV +DD+
Sbjct: 58 TAFLTDQGVYFYKVMPFGLKNAGATYQRTVNKMFAHQIGRNMEVYVDDM 106
Score = 31.2 bits (69), Expect(2) = 2e-10
Identities = 12/23 (52%), Positives = 17/23 (73%)
Frame = +1
Query: 10 GHAVLCFLDVYKGYHHIQIAKEE 78
GHA L F+D Y GY+ I++A E+
Sbjct: 32 GHARLSFMDAYSGYNQIRMAPED 54
>emb|CAP16632.1| polyprotein [Musa acuminata subsp. malaccensis]
Length = 110
Score = 59.7 bits (143), Expect(2) = 3e-10
Identities = 28/49 (57%), Positives = 38/49 (77%), Gaps = 2/49 (4%)
Frame = +3
Query: 78 TAFVTDDSIFYYTRMPFRLKNAGA--QQMVNNLFSNQINRNMEV*IDDL 218
TAF+TD +++Y MPF LKNAGA Q+ VN +F++QI RNMEV +DD+
Sbjct: 58 TAFLTDQGVYFYKVMPFGLKNAGATYQRTVNKMFAHQIGRNMEVYVDDM 106
Score = 30.4 bits (67), Expect(2) = 3e-10
Identities = 12/23 (52%), Positives = 17/23 (73%)
Frame = +1
Query: 10 GHAVLCFLDVYKGYHHIQIAKEE 78
GHA L F+D Y GY+ I++A E+
Sbjct: 32 GHARLSFMDAYLGYNQIRMAPED 54
>emb|CAP16638.1| polyprotein [Musa acuminata subsp. malaccensis]
Length = 110
Score = 58.9 bits (141), Expect(2) = 3e-10
Identities = 29/49 (59%), Positives = 37/49 (75%), Gaps = 2/49 (4%)
Frame = +3
Query: 78 TAFVTDDSIFYYTRMPFRLKNAGA--QQMVNNLFSNQINRNMEV*IDDL 218
TAF+TD I++Y MPF LKNAGA Q+ VN +F+ QI RNMEV +DD+
Sbjct: 58 TAFLTDQGIYFYRVMPFGLKNAGATYQRTVNKMFAPQIGRNMEVYVDDM 106
Score = 31.2 bits (69), Expect(2) = 3e-10
Identities = 12/23 (52%), Positives = 17/23 (73%)
Frame = +1
Query: 10 GHAVLCFLDVYKGYHHIQIAKEE 78
GHA L F+D Y GY+ I++A E+
Sbjct: 32 GHARLSFMDAYSGYNQIRMAPED 54
>emb|CAP16639.1| polyprotein [Musa acuminata subsp. malaccensis]
Length = 110
Score = 57.4 bits (137), Expect(2) = 9e-10
Identities = 28/49 (57%), Positives = 36/49 (73%), Gaps = 2/49 (4%)
Frame = +3
Query: 78 TAFVTDDSIFYYTRMPFRLKNAGA--QQMVNNLFSNQINRNMEV*IDDL 218
T F+TD I++Y MPF LKNAGA Q+ VN +F+ QI RNMEV +DD+
Sbjct: 58 TVFLTDQGIYFYRVMPFGLKNAGATYQRTVNKMFAPQIGRNMEVYVDDM 106
Score = 31.2 bits (69), Expect(2) = 9e-10
Identities = 12/23 (52%), Positives = 17/23 (73%)
Frame = +1
Query: 10 GHAVLCFLDVYKGYHHIQIAKEE 78
GHA L F+D Y GY+ I++A E+
Sbjct: 32 GHARLSFMDAYSGYNQIRMAPED 54
>emb|CAP16631.1| polyprotein [Musa acuminata subsp. malaccensis]
Length = 110
Score = 55.8 bits (133), Expect(2) = 3e-09
Identities = 28/49 (57%), Positives = 36/49 (73%), Gaps = 2/49 (4%)
Frame = +3
Query: 78 TAFVTDDSIFYYTRMPFRLKNAGA--QQMVNNLFSNQINRNMEV*IDDL 218
TAF+TD I++Y M F LKNAGA Q+ VN +F+ QI RNMEV +DD+
Sbjct: 58 TAFLTDQGIYFYKVMSFGLKNAGATYQRTVNKMFAPQIGRNMEVYVDDM 106
Score = 31.2 bits (69), Expect(2) = 3e-09
Identities = 12/23 (52%), Positives = 17/23 (73%)
Frame = +1
Query: 10 GHAVLCFLDVYKGYHHIQIAKEE 78
GHA L F+D Y GY+ I++A E+
Sbjct: 32 GHARLSFMDAYSGYNQIRMAPED 54
>emb|CAP16637.1| polyprotein [Musa acuminata subsp. malaccensis]
Length = 110
Score = 55.5 bits (132), Expect(2) = 3e-09
Identities = 26/49 (53%), Positives = 37/49 (75%), Gaps = 2/49 (4%)
Frame = +3
Query: 78 TAFVTDDSIFYYTRMPFRLKNAGA--QQMVNNLFSNQINRNMEV*IDDL 218
TAF+T+ +++Y M F LKNAGA Q+ VN +F++QI RNMEV +DD+
Sbjct: 58 TAFLTNQGVYFYKAMSFGLKNAGATYQRTVNKMFAHQIGRNMEVYVDDM 106
Score = 31.2 bits (69), Expect(2) = 3e-09
Identities = 12/23 (52%), Positives = 17/23 (73%)
Frame = +1
Query: 10 GHAVLCFLDVYKGYHHIQIAKEE 78
GHA L F+D Y GY+ I++A E+
Sbjct: 32 GHARLSFMDAYSGYNQIRMAPED 54
>emb|CAP16633.1| polyprotein [Musa acuminata subsp. malaccensis]
Length = 110
Score = 57.8 bits (138), Expect(2) = 4e-09
Identities = 27/48 (56%), Positives = 37/48 (77%), Gaps = 2/48 (4%)
Frame = +3
Query: 81 AFVTDDSIFYYTRMPFRLKNAGA--QQMVNNLFSNQINRNMEV*IDDL 218
AF+TD +++Y MPF LKNAGA Q+ VN +F++QI RNMEV +DD+
Sbjct: 59 AFLTDQGVYFYKVMPFGLKNAGATYQRTVNKMFTHQIGRNMEVYVDDM 106
Score = 28.5 bits (62), Expect(2) = 4e-09
Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Frame = +1
Query: 10 GHAVLCFLDVYKGYHHIQIAKEEL-HLSLTT 99
GHA L F+D Y Y+ I++A E+ H++ T
Sbjct: 32 GHARLSFMDAYSRYNQIRMAPEDREHMAFLT 62
>emb|CAP16634.1| polyprotein [Musa acuminata subsp. malaccensis]
Length = 110
Score = 55.1 bits (131), Expect(2) = 4e-09
Identities = 26/49 (53%), Positives = 36/49 (73%), Gaps = 2/49 (4%)
Frame = +3
Query: 78 TAFVTDDSIFYYTRMPFRLKNAGA--QQMVNNLFSNQINRNMEV*IDDL 218
T F+TD +++Y M F LKNAGA Q+ VN +F++QI RNMEV +DD+
Sbjct: 58 TTFLTDQGVYFYKVMSFGLKNAGATYQRTVNKMFAHQIGRNMEVYVDDM 106
Score = 31.2 bits (69), Expect(2) = 4e-09
Identities = 12/23 (52%), Positives = 17/23 (73%)
Frame = +1
Query: 10 GHAVLCFLDVYKGYHHIQIAKEE 78
GHA L F+D Y GY+ I++A E+
Sbjct: 32 GHARLSFMDAYSGYNQIRMAPED 54
>emb|CAP16628.1| polyprotein [Musa acuminata subsp. malaccensis]
Length = 110
Score = 56.6 bits (135), Expect(2) = 6e-09
Identities = 27/49 (55%), Positives = 37/49 (75%), Gaps = 2/49 (4%)
Frame = +3
Query: 78 TAFVTDDSIFYYTRMPFRLKNAGA--QQMVNNLFSNQINRNMEV*IDDL 218
TAF+TD +++Y M F LKNAGA Q+ VN +F++QI RNMEV +DD+
Sbjct: 58 TAFLTDQGVYFYKVMSFGLKNAGATYQRTVNKMFAHQIGRNMEVYVDDM 106
Score = 29.3 bits (64), Expect(2) = 6e-09
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = +1
Query: 7 VGHAVLCFLDVYKGYHHIQIAKEE 78
VGHA L F+D Y G + I++A E+
Sbjct: 31 VGHARLSFMDAYSGNNQIRMAPED 54
>emb|CAP16636.1| polyprotein [Musa acuminata subsp. malaccensis]
Length = 110
Score = 54.7 bits (130), Expect(2) = 6e-09
Identities = 26/49 (53%), Positives = 37/49 (75%), Gaps = 2/49 (4%)
Frame = +3
Query: 78 TAFVTDDSIFYYTRMPFRLKNAGA--QQMVNNLFSNQINRNMEV*IDDL 218
TAF+T+ +++Y M F LKNAGA Q+ VN +F++QI RNMEV +DD+
Sbjct: 58 TAFLTNQGVYFYKVMSFGLKNAGATYQRTVNKMFAHQIGRNMEVYVDDM 106
Score = 31.2 bits (69), Expect(2) = 6e-09
Identities = 12/23 (52%), Positives = 17/23 (73%)
Frame = +1
Query: 10 GHAVLCFLDVYKGYHHIQIAKEE 78
GHA L F+D Y GY+ I++A E+
Sbjct: 32 GHARLSFMDAYSGYNQIRMAPED 54
>emb|CAP16629.1| polyprotein [Musa acuminata subsp. malaccensis]
Length = 110
Score = 52.8 bits (125), Expect(2) = 7e-09
Identities = 25/49 (51%), Positives = 35/49 (71%), Gaps = 2/49 (4%)
Frame = +3
Query: 78 TAFVTDDSIFYYTRMPFRLKNAGA--QQMVNNLFSNQINRNMEV*IDDL 218
TAF+TD +++Y M F LK AGA Q+ N +F++QI RNMEV +DD+
Sbjct: 58 TAFLTDQGVYFYKVMSFGLKKAGATYQRTANKIFAHQIGRNMEVYVDDM 106
Score = 32.7 bits (73), Expect(2) = 7e-09
Identities = 12/23 (52%), Positives = 18/23 (78%)
Frame = +1
Query: 10 GHAVLCFLDVYKGYHHIQIAKEE 78
GHA+L F+D Y GY+ I++A E+
Sbjct: 32 GHALLSFMDAYSGYNQIRMAPED 54
>dbj|BAC05657.1| putatitive retrotransposon Cinful-1 [Oryza sativa Japonica Group]
Length = 1739
Score = 50.1 bits (118), Expect(2) = 1e-08
Identities = 31/67 (46%), Positives = 37/67 (55%), Gaps = 7/67 (10%)
Frame = +3
Query: 78 TAFVTDDSIFYYTRMPFRLKNAGA--QQMVNNLFSNQINRNMEV*IDDLKI-----TDLS 236
TAF+T F YT MPF LKNAG Q+M SNQI N+E +DDL + L
Sbjct: 886 TAFITPVGTFCYTTMPFGLKNAGPTFQRMTCITLSNQIGHNVEAYVDDLVVKTRHQDTLQ 945
Query: 237 IDMVETF 257
D+ ETF
Sbjct: 946 QDLAETF 952
Score = 34.7 bits (78), Expect(2) = 1e-08
Identities = 13/23 (56%), Positives = 18/23 (78%)
Frame = +1
Query: 10 GHAVLCFLDVYKGYHHIQIAKEE 78
G +LCFLD Y GYH I++A+E+
Sbjct: 860 GCDLLCFLDAYSGYHQIRMARED 882
>emb|CAD39844.2| OSJNBb0072N21.13 [Oryza sativa Japonica Group]
gi|38344525|emb|CAE05407.2| OSJNBa0036B17.1 [Oryza sativa
Japonica Group]
Length = 1070
Score = 50.1 bits (118), Expect(2) = 1e-08
Identities = 31/67 (46%), Positives = 37/67 (55%), Gaps = 7/67 (10%)
Frame = +3
Query: 78 TAFVTDDSIFYYTRMPFRLKNAGA--QQMVNNLFSNQINRNMEV*IDDLKITD-----LS 236
TAF+T F YT MPF LKN G Q+M SNQI RN+E +DDL + L
Sbjct: 896 TAFITPVVTFCYTTMPFGLKNVGPTFQRMTRITLSNQIGRNVEAYVDDLVVKTRHQDALL 955
Query: 237 IDMVETF 257
D+ ETF
Sbjct: 956 QDLTETF 962
Score = 34.7 bits (78), Expect(2) = 1e-08
Identities = 13/23 (56%), Positives = 18/23 (78%)
Frame = +1
Query: 10 GHAVLCFLDVYKGYHHIQIAKEE 78
G +LCFLD Y GYH I++A+E+
Sbjct: 870 GCYLLCFLDAYSGYHQIRMARED 892
>gb|AAN31788.1| Putative polyprotein [Oryza sativa Japonica Group]
gi|31431648|gb|AAP53392.1| retrotransposon protein,
putative, unclassified [Oryza sativa Japonica Group]
Length = 2027
Score = 45.4 bits (106), Expect(2) = 1e-08
Identities = 28/67 (41%), Positives = 36/67 (53%), Gaps = 7/67 (10%)
Frame = +3
Query: 78 TAFVTDDSIFYYTRMPFRLKNAGA--QQMVNNLFSNQINRNMEV*IDDLKI-----TDLS 236
TAF+T + YT MPF LKNAG Q+ +QI RN+E +DDL + L
Sbjct: 936 TAFITPVGTYCYTSMPFGLKNAGPTFQRTTRISLGSQIGRNVEAYVDDLVVKTRNQETLL 995
Query: 237 IDMVETF 257
D+ ETF
Sbjct: 996 SDLAETF 1002
Score = 38.9 bits (89), Expect(2) = 1e-08
Identities = 14/23 (60%), Positives = 19/23 (82%)
Frame = +1
Query: 10 GHAVLCFLDVYKGYHHIQIAKEE 78
GH +LCFLD Y GYH I++A+E+
Sbjct: 910 GHDLLCFLDAYSGYHQIRMARED 932
>gb|ABA98055.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1983
Score = 48.1 bits (113), Expect(2) = 1e-08
Identities = 28/67 (41%), Positives = 37/67 (55%), Gaps = 7/67 (10%)
Frame = +3
Query: 78 TAFVTDDSIFYYTRMPFRLKNAGA--QQMVNNLFSNQINRNMEV*IDDLKITD-----LS 236
TAF+T + YT MPF LKNAG Q+ NQ+ RN+E +DDL + L
Sbjct: 933 TAFITPIGTYCYTTMPFGLKNAGPTFQRTTRISLGNQLGRNVEAYVDDLVVKTRNQEMLL 992
Query: 237 IDMVETF 257
+D+ ETF
Sbjct: 993 LDLAETF 999
Score = 36.2 bits (82), Expect(2) = 1e-08
Identities = 14/24 (58%), Positives = 19/24 (79%)
Frame = +1
Query: 7 VGHAVLCFLDVYKGYHHIQIAKEE 78
VG +LCFLD Y GYH I++A+E+
Sbjct: 906 VGCDLLCFLDAYSGYHQIRMARED 929
>gb|ABF98840.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1068
Score = 50.1 bits (118), Expect(2) = 1e-08
Identities = 31/66 (46%), Positives = 36/66 (54%), Gaps = 7/66 (10%)
Frame = +3
Query: 81 AFVTDDSIFYYTRMPFRLKNAGA--QQMVNNLFSNQINRNMEV*IDDLKI-----TDLSI 239
AF+T F YT MPF LKNAG Q M SNQI RN+E +DDL + L
Sbjct: 800 AFITPVGTFCYTTMPFGLKNAGLTFQHMTRITLSNQIGRNVEAYVDDLVVKTRHQDTLLQ 859
Query: 240 DMVETF 257
D+ ETF
Sbjct: 860 DLAETF 865
Score = 34.3 bits (77), Expect(2) = 1e-08
Identities = 12/23 (52%), Positives = 18/23 (78%)
Frame = +1
Query: 10 GHAVLCFLDVYKGYHHIQIAKEE 78
G +LCFLD Y GYH +++A+E+
Sbjct: 773 GCDLLCFLDAYSGYHQVRMARED 795
>gb|AAK71558.1|AC087852_18 putative gag-pol protein precursor [Oryza sativa Japonica Group]
Length = 1049
Score = 50.1 bits (118), Expect(2) = 1e-08
Identities = 31/66 (46%), Positives = 36/66 (54%), Gaps = 7/66 (10%)
Frame = +3
Query: 81 AFVTDDSIFYYTRMPFRLKNAGA--QQMVNNLFSNQINRNMEV*IDDLKI-----TDLSI 239
AF+T F YT MPF LKNAG Q M SNQI RN+E +DDL + L
Sbjct: 781 AFITPVGTFCYTTMPFGLKNAGLTFQHMTRITLSNQIGRNVEAYVDDLVVKTRHQDTLLQ 840
Query: 240 DMVETF 257
D+ ETF
Sbjct: 841 DLAETF 846
Score = 34.3 bits (77), Expect(2) = 1e-08
Identities = 12/23 (52%), Positives = 18/23 (78%)
Frame = +1
Query: 10 GHAVLCFLDVYKGYHHIQIAKEE 78
G +LCFLD Y GYH +++A+E+
Sbjct: 754 GCDLLCFLDAYSGYHQVRMARED 776
>emb|CCI55289.1| PH01B001G05.12 [Phyllostachys edulis]
Length = 1335
Score = 54.7 bits (130), Expect(2) = 2e-08
Identities = 29/67 (43%), Positives = 41/67 (61%), Gaps = 7/67 (10%)
Frame = +3
Query: 78 TAFVTDDSIFYYTRMPFRLKNAGA--QQMVNNLFSNQINRNMEV*IDDLKITDLS----- 236
T F+T IF Y +MPF LKNAGA Q++ + FS+Q+ RN+E +DDL + +
Sbjct: 648 TTFITPFGIFCYVKMPFGLKNAGASFQRLTQSTFSSQLGRNLEAYVDDLVVKSIKRLNHI 707
Query: 237 IDMVETF 257
D+ ETF
Sbjct: 708 TDLQETF 714
Score = 29.3 bits (64), Expect(2) = 2e-08
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +1
Query: 7 VGHAVLCFLDVYKGYHHIQIAKEE 78
VG VL FLD Y GYH I + ++
Sbjct: 621 VGCEVLSFLDAYSGYHQINMCLDD 644
>gb|AGX45500.1| reverse transcriptase, partial [Prunus salicina]
Length = 143
Score = 52.4 bits (124), Expect(2) = 2e-08
Identities = 26/57 (45%), Positives = 38/57 (66%), Gaps = 2/57 (3%)
Frame = +3
Query: 78 TAFVTDDSIFYYTRMPFRLKNAGA--QQMVNNLFSNQINRNMEV*IDDLKITDLSID 242
T+F+TD ++ Y MPF LKNAGA Q++VNN+F+ I MEV +DD+ + + D
Sbjct: 58 TSFITDRDLYCYKVMPFGLKNAGATYQRLVNNIFAPLIGDTMEVYVDDMLVKSRTTD 114
Score = 31.6 bits (70), Expect(2) = 2e-08
Identities = 14/31 (45%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Frame = +1
Query: 10 GHAVLCFLDVYKGYHHIQI-AKEELHLSLTT 99
GHA+L F+D Y GY+ I I ++++ H S T
Sbjct: 32 GHALLSFMDAYSGYNQIFIHSEDQAHTSFIT 62
>gb|AAU10826.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1970
Score = 48.9 bits (115), Expect(2) = 2e-08
Identities = 30/67 (44%), Positives = 38/67 (56%), Gaps = 7/67 (10%)
Frame = +3
Query: 78 TAFVTDDSIFYYTRMPFRLKNAGA--QQMVNNLFSNQINRNMEV*IDDLKI-----TDLS 236
TAF+T I+ YT MPF LKNAG Q+ +QI RN+E +DDL + L
Sbjct: 879 TAFITPIGIYCYTTMPFGLKNAGPTFQRTTRISLGSQIGRNVEAYVDDLVVKTRNQETLL 938
Query: 237 IDMVETF 257
D+VETF
Sbjct: 939 SDLVETF 945
Score = 34.7 bits (78), Expect(2) = 2e-08
Identities = 13/23 (56%), Positives = 18/23 (78%)
Frame = +1
Query: 10 GHAVLCFLDVYKGYHHIQIAKEE 78
G +LCFLD Y GYH I++A+E+
Sbjct: 853 GCDLLCFLDAYSGYHQIRMARED 875