BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Catharanthus23_contig00031603
         (291 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006350672.1| PREDICTED: DNA repair protein XRCC4-like iso...    76   4e-12
ref|XP_006350671.1| PREDICTED: DNA repair protein XRCC4-like iso...    76   4e-12
ref|XP_004241022.1| PREDICTED: DNA repair protein XRCC4-like iso...    76   5e-12
ref|XP_004241021.1| PREDICTED: DNA repair protein XRCC4-like iso...    76   5e-12
ref|XP_002517008.1| DNA-repair protein XRCC4, putative [Ricinus ...    75   7e-12
ref|XP_004495346.1| PREDICTED: DNA repair protein XRCC4-like [Ci...    74   2e-11
ref|XP_002284388.2| PREDICTED: DNA repair protein XRCC4 [Vitis v...    74   2e-11
emb|CBI26376.3| unnamed protein product [Vitis vinifera]               74   2e-11
ref|XP_006489536.1| PREDICTED: DNA repair protein XRCC4-like [Ci...    73   5e-11
gb|ACJ85144.1| unknown [Medicago truncatula]                           73   5e-11
ref|XP_003590794.1| DNA repair protein XRCC4 [Medicago truncatul...    73   5e-11
gb|EOY05932.1| DNA ligase iv-binding protein XRCC4 isoform 3 [Th...    72   1e-10
gb|EOY05931.1| DNA ligase iv-binding protein XRCC4 isoform 2 [Th...    72   1e-10
gb|EOY05930.1| DNA repair protein XRCC4, putative isoform 1 [The...    72   1e-10
gb|EMJ27301.1| hypothetical protein PRUPE_ppa010906mg [Prunus pe...    72   1e-10
ref|XP_006420167.1| hypothetical protein CICLE_v10005689mg [Citr...    71   2e-10
ref|XP_006420162.1| hypothetical protein CICLE_v10005690mg [Citr...    71   2e-10
ref|XP_002264931.1| PREDICTED: DNA repair protein XRCC4-like [Vi...    70   3e-10
ref|XP_006298402.1| hypothetical protein CARUB_v10014474mg [Caps...    69   5e-10
gb|EXB29874.1| DNA repair protein XRCC4 [Morus notabilis]              69   7e-10

>ref|XP_006350672.1| PREDICTED: DNA repair protein XRCC4-like isoform X2 [Solanum
           tuberosum]
          Length = 224

 Score = 76.3 bits (186), Expect = 4e-12
 Identities = 38/60 (63%), Positives = 44/60 (73%)
 Frame = -1

Query: 180 SQRHTCLKLEISARNDSGTQEVERIFVKGTWYSSRFHLAITDGLNAWTCTASEEEIEERA 1
           S +HTCLKL IS +        E+IFVKGTW+SS F L ITDGL +WTC ASEEE+EERA
Sbjct: 5   SPKHTCLKLVISNK--------EQIFVKGTWFSSHFDLFITDGLQSWTCHASEEEVEERA 56


>ref|XP_006350671.1| PREDICTED: DNA repair protein XRCC4-like isoform X1 [Solanum
           tuberosum]
          Length = 267

 Score = 76.3 bits (186), Expect = 4e-12
 Identities = 38/60 (63%), Positives = 44/60 (73%)
 Frame = -1

Query: 180 SQRHTCLKLEISARNDSGTQEVERIFVKGTWYSSRFHLAITDGLNAWTCTASEEEIEERA 1
           S +HTCLKL IS +        E+IFVKGTW+SS F L ITDGL +WTC ASEEE+EERA
Sbjct: 5   SPKHTCLKLVISNK--------EQIFVKGTWFSSHFDLFITDGLQSWTCHASEEEVEERA 56


>ref|XP_004241022.1| PREDICTED: DNA repair protein XRCC4-like isoform 2 [Solanum
           lycopersicum]
          Length = 211

 Score = 75.9 bits (185), Expect = 5e-12
 Identities = 38/60 (63%), Positives = 45/60 (75%)
 Frame = -1

Query: 180 SQRHTCLKLEISARNDSGTQEVERIFVKGTWYSSRFHLAITDGLNAWTCTASEEEIEERA 1
           S +HTCLKL IS +        E+IFVKGTW+SS F L ITDGL++WTC ASEEE+EERA
Sbjct: 5   SPKHTCLKLVISNK--------EQIFVKGTWFSSYFDLFITDGLHSWTCHASEEEVEERA 56


>ref|XP_004241021.1| PREDICTED: DNA repair protein XRCC4-like isoform 1 [Solanum
           lycopersicum]
          Length = 254

 Score = 75.9 bits (185), Expect = 5e-12
 Identities = 38/60 (63%), Positives = 45/60 (75%)
 Frame = -1

Query: 180 SQRHTCLKLEISARNDSGTQEVERIFVKGTWYSSRFHLAITDGLNAWTCTASEEEIEERA 1
           S +HTCLKL IS +        E+IFVKGTW+SS F L ITDGL++WTC ASEEE+EERA
Sbjct: 5   SPKHTCLKLVISNK--------EQIFVKGTWFSSYFDLFITDGLHSWTCHASEEEVEERA 56


>ref|XP_002517008.1| DNA-repair protein XRCC4, putative [Ricinus communis]
           gi|223543643|gb|EEF45171.1| DNA-repair protein XRCC4,
           putative [Ricinus communis]
          Length = 265

 Score = 75.5 bits (184), Expect = 7e-12
 Identities = 35/61 (57%), Positives = 44/61 (72%)
 Frame = -1

Query: 183 DSQRHTCLKLEISARNDSGTQEVERIFVKGTWYSSRFHLAITDGLNAWTCTASEEEIEER 4
           ++ RHTCLKLEI+          E IFVKGTW+ S FHL+ITDGLNAW C A+E +++ER
Sbjct: 11  ETARHTCLKLEIT----------EPIFVKGTWFDSHFHLSITDGLNAWVCNATEGQVKER 60

Query: 3   A 1
           A
Sbjct: 61  A 61


>ref|XP_004495346.1| PREDICTED: DNA repair protein XRCC4-like [Cicer arietinum]
          Length = 255

 Score = 73.9 bits (180), Expect = 2e-11
 Identities = 34/63 (53%), Positives = 45/63 (71%)
 Frame = -1

Query: 189 MEDSQRHTCLKLEISARNDSGTQEVERIFVKGTWYSSRFHLAITDGLNAWTCTASEEEIE 10
           ME+ +RHTCLKL+I+          E IFVKGTW+ + F+L+ITDG  AW C ASEEE++
Sbjct: 1   MEEKKRHTCLKLQINGE--------EAIFVKGTWFDTHFNLSITDGFTAWYCYASEEELK 52

Query: 9   ERA 1
           +RA
Sbjct: 53  QRA 55


>ref|XP_002284388.2| PREDICTED: DNA repair protein XRCC4 [Vitis vinifera]
          Length = 259

 Score = 73.9 bits (180), Expect = 2e-11
 Identities = 34/63 (53%), Positives = 45/63 (71%)
 Frame = -1

Query: 189 MEDSQRHTCLKLEISARNDSGTQEVERIFVKGTWYSSRFHLAITDGLNAWTCTASEEEIE 10
           ME + RH+CLKL+I  ++       E IF+K TW+ S FHL+ITDGL+AW C ASE+E+ 
Sbjct: 1   MEPTPRHSCLKLQIPNQS-------EPIFIKATWFPSHFHLSITDGLHAWLCNASEDEVR 53

Query: 9   ERA 1
           ERA
Sbjct: 54  ERA 56


>emb|CBI26376.3| unnamed protein product [Vitis vinifera]
          Length = 258

 Score = 73.9 bits (180), Expect = 2e-11
 Identities = 34/63 (53%), Positives = 45/63 (71%)
 Frame = -1

Query: 189 MEDSQRHTCLKLEISARNDSGTQEVERIFVKGTWYSSRFHLAITDGLNAWTCTASEEEIE 10
           ME + RH+CLKL+I  ++       E IF+K TW+ S FHL+ITDGL+AW C ASE+E+ 
Sbjct: 1   MEPTPRHSCLKLQIPNQS-------EPIFIKATWFPSHFHLSITDGLHAWLCNASEDEVR 53

Query: 9   ERA 1
           ERA
Sbjct: 54  ERA 56


>ref|XP_006489536.1| PREDICTED: DNA repair protein XRCC4-like [Citrus sinensis]
          Length = 256

 Score = 72.8 bits (177), Expect = 5e-11
 Identities = 34/58 (58%), Positives = 41/58 (70%)
 Frame = -1

Query: 174 RHTCLKLEISARNDSGTQEVERIFVKGTWYSSRFHLAITDGLNAWTCTASEEEIEERA 1
           RHTCLKLEIS   D        IFVKGTW+ + F L+ITDGLN W C ASEE++++RA
Sbjct: 4   RHTCLKLEISDATDP-------IFVKGTWFETHFDLSITDGLNVWLCNASEEQVKDRA 54


>gb|ACJ85144.1| unknown [Medicago truncatula]
          Length = 135

 Score = 72.8 bits (177), Expect = 5e-11
 Identities = 32/63 (50%), Positives = 47/63 (74%)
 Frame = -1

Query: 189 MEDSQRHTCLKLEISARNDSGTQEVERIFVKGTWYSSRFHLAITDGLNAWTCTASEEEIE 10
           ME+ +RHTCLKL+++        E E IFVKGTW+++ F+L+ITDG  +W C ASE+E++
Sbjct: 1   MEEKKRHTCLKLQLT--------EEESIFVKGTWFNTHFNLSITDGSTSWHCNASEDEVK 52

Query: 9   ERA 1
           +RA
Sbjct: 53  QRA 55


>ref|XP_003590794.1| DNA repair protein XRCC4 [Medicago truncatula]
           gi|355479842|gb|AES61045.1| DNA repair protein XRCC4
           [Medicago truncatula]
          Length = 256

 Score = 72.8 bits (177), Expect = 5e-11
 Identities = 32/63 (50%), Positives = 47/63 (74%)
 Frame = -1

Query: 189 MEDSQRHTCLKLEISARNDSGTQEVERIFVKGTWYSSRFHLAITDGLNAWTCTASEEEIE 10
           ME+ +RHTCLKL+++        E E IFVKGTW+++ F+L+ITDG  +W C ASE+E++
Sbjct: 1   MEEKKRHTCLKLQLT--------EEESIFVKGTWFNTHFNLSITDGSTSWHCNASEDEVK 52

Query: 9   ERA 1
           +RA
Sbjct: 53  QRA 55


>gb|EOY05932.1| DNA ligase iv-binding protein XRCC4 isoform 3 [Theobroma cacao]
          Length = 277

 Score = 71.6 bits (174), Expect = 1e-10
 Identities = 33/58 (56%), Positives = 42/58 (72%)
 Frame = -1

Query: 174 RHTCLKLEISARNDSGTQEVERIFVKGTWYSSRFHLAITDGLNAWTCTASEEEIEERA 1
           RHTCLKLEI +         E IFVKGTW+ + F ++ITDGL+AW C A+EEE++ERA
Sbjct: 10  RHTCLKLEIPS--------TEPIFVKGTWFDAHFDISITDGLHAWVCNATEEEVKERA 59


>gb|EOY05931.1| DNA ligase iv-binding protein XRCC4 isoform 2 [Theobroma cacao]
          Length = 276

 Score = 71.6 bits (174), Expect = 1e-10
 Identities = 33/58 (56%), Positives = 42/58 (72%)
 Frame = -1

Query: 174 RHTCLKLEISARNDSGTQEVERIFVKGTWYSSRFHLAITDGLNAWTCTASEEEIEERA 1
           RHTCLKLEI +         E IFVKGTW+ + F ++ITDGL+AW C A+EEE++ERA
Sbjct: 10  RHTCLKLEIPS--------TEPIFVKGTWFDAHFDISITDGLHAWVCNATEEEVKERA 59


>gb|EOY05930.1| DNA repair protein XRCC4, putative isoform 1 [Theobroma cacao]
          Length = 263

 Score = 71.6 bits (174), Expect = 1e-10
 Identities = 33/58 (56%), Positives = 42/58 (72%)
 Frame = -1

Query: 174 RHTCLKLEISARNDSGTQEVERIFVKGTWYSSRFHLAITDGLNAWTCTASEEEIEERA 1
           RHTCLKLEI +         E IFVKGTW+ + F ++ITDGL+AW C A+EEE++ERA
Sbjct: 10  RHTCLKLEIPS--------TEPIFVKGTWFDAHFDISITDGLHAWVCNATEEEVKERA 59


>gb|EMJ27301.1| hypothetical protein PRUPE_ppa010906mg [Prunus persica]
          Length = 231

 Score = 71.6 bits (174), Expect = 1e-10
 Identities = 34/71 (47%), Positives = 47/71 (66%)
 Frame = -1

Query: 213 KSFKSDPYMEDSQRHTCLKLEISARNDSGTQEVERIFVKGTWYSSRFHLAITDGLNAWTC 34
           +SF+       S +HTCLKL++        +  + I+VKGTW+ SRF L+ITDGLNAW C
Sbjct: 46  ESFQPATMETPSPKHTCLKLQLK-------EAQQPIYVKGTWFESRFDLSITDGLNAWIC 98

Query: 33  TASEEEIEERA 1
            ASEE++ +RA
Sbjct: 99  HASEEQVRDRA 109


>ref|XP_006420167.1| hypothetical protein CICLE_v10005689mg [Citrus clementina]
           gi|557522040|gb|ESR33407.1| hypothetical protein
           CICLE_v10005689mg [Citrus clementina]
          Length = 256

 Score = 70.9 bits (172), Expect = 2e-10
 Identities = 33/58 (56%), Positives = 40/58 (68%)
 Frame = -1

Query: 174 RHTCLKLEISARNDSGTQEVERIFVKGTWYSSRFHLAITDGLNAWTCTASEEEIEERA 1
           RHTCLKLEI    D        IF KGTW+ + F L+ITDGLNAW C ASEE++++RA
Sbjct: 4   RHTCLKLEIPDATDP-------IFAKGTWFQTHFDLSITDGLNAWLCNASEEQVKDRA 54


>ref|XP_006420162.1| hypothetical protein CICLE_v10005690mg [Citrus clementina]
           gi|557522035|gb|ESR33402.1| hypothetical protein
           CICLE_v10005690mg [Citrus clementina]
          Length = 256

 Score = 70.9 bits (172), Expect = 2e-10
 Identities = 33/61 (54%), Positives = 42/61 (68%)
 Frame = -1

Query: 183 DSQRHTCLKLEISARNDSGTQEVERIFVKGTWYSSRFHLAITDGLNAWTCTASEEEIEER 4
           ++  HTCLKLEI    D        IFVKGTW+ + F L+ITDGLNAW C ASEE++++R
Sbjct: 2   EATSHTCLKLEIPDATDP-------IFVKGTWFQTHFDLSITDGLNAWLCNASEEQVKDR 54

Query: 3   A 1
           A
Sbjct: 55  A 55


>ref|XP_002264931.1| PREDICTED: DNA repair protein XRCC4-like [Vitis vinifera]
          Length = 166

 Score = 70.1 bits (170), Expect = 3e-10
 Identities = 32/63 (50%), Positives = 43/63 (68%)
 Frame = -1

Query: 189 MEDSQRHTCLKLEISARNDSGTQEVERIFVKGTWYSSRFHLAITDGLNAWTCTASEEEIE 10
           ME + RH+CLKL+I  ++       E IF+K TW+ S FHL+ITD L+ W C ASE+E+ 
Sbjct: 1   MEPTPRHSCLKLQIPNQS-------EPIFIKATWFPSHFHLSITDSLHTWLCNASEDEVR 53

Query: 9   ERA 1
           ERA
Sbjct: 54  ERA 56


>ref|XP_006298402.1| hypothetical protein CARUB_v10014474mg [Capsella rubella]
           gi|482567111|gb|EOA31300.1| hypothetical protein
           CARUB_v10014474mg [Capsella rubella]
          Length = 249

 Score = 69.3 bits (168), Expect = 5e-10
 Identities = 34/65 (52%), Positives = 45/65 (69%), Gaps = 2/65 (3%)
 Frame = -1

Query: 189 MEDSQR--HTCLKLEISARNDSGTQEVERIFVKGTWYSSRFHLAITDGLNAWTCTASEEE 16
           M +S+R  HTCL+LEIS          + IFVKGTWY SRF +++TDG ++W C A+EEE
Sbjct: 1   MVESERTKHTCLRLEISG--------ADPIFVKGTWYHSRFDISVTDGSSSWICNATEEE 52

Query: 15  IEERA 1
           + ERA
Sbjct: 53  VAERA 57


>gb|EXB29874.1| DNA repair protein XRCC4 [Morus notabilis]
          Length = 257

 Score = 68.9 bits (167), Expect = 7e-10
 Identities = 32/63 (50%), Positives = 44/63 (69%)
 Frame = -1

Query: 189 MEDSQRHTCLKLEISARNDSGTQEVERIFVKGTWYSSRFHLAITDGLNAWTCTASEEEIE 10
           ME+S+RHTCLKLE         ++ + IFV  TW+ S F+L++TDG +AW C ASEEE+ 
Sbjct: 1   MEESKRHTCLKLE--------PKDSDPIFVNATWFPSHFNLSVTDGHHAWICHASEEEVR 52

Query: 9   ERA 1
           +RA
Sbjct: 53  DRA 55