BLASTX nr result

ID: Catharanthus23_contig00029234 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Catharanthus23_contig00029234
         (884 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006595311.1| PREDICTED: uncharacterized protein LOC102668...    48   2e-10
ref|XP_006579213.1| PREDICTED: uncharacterized protein LOC102670...    41   4e-07
ref|XP_006595463.1| PREDICTED: uncharacterized protein LOC102660...    59   3e-06
ref|XP_006381710.1| hypothetical protein POPTR_0006s16215g [Popu...    57   9e-06

>ref|XP_006595311.1| PREDICTED: uncharacterized protein LOC102668530 [Glycine max]
          Length = 477

 Score = 47.8 bits (112), Expect(2) = 2e-10
 Identities = 32/97 (32%), Positives = 45/97 (46%), Gaps = 8/97 (8%)
 Frame = +3

Query: 498 FLKMDTLCRLYRQQEGSILFLFFACVFTADIWKRIRDWARLRKDMLTNRSSLKCLLKE-- 671
           FL    LC L R +  S   LFF+C  +  +W  IRDW  L +  +    SL+C +    
Sbjct: 349 FLNKGLLCPLCRTKAKSHAHLFFSCRISLQVWANIRDWIPLHRQTI----SLQCTINSRI 404

Query: 672 -NRGTS-----WRCT*RKLSFAATLYYLWEYRNRVIF 764
             R TS     +RC    L+ A  +Y  W  RN ++F
Sbjct: 405 CGRATSGTWGKFRC----LALAIAVYCTWISRNLLLF 437



 Score = 44.7 bits (104), Expect(2) = 2e-10
 Identities = 23/83 (27%), Positives = 41/83 (49%)
 Frame = +2

Query: 260 IVKRLLQIRDRLVKAEGLITDAIA*ISLWNCHRTFQTSQGYEYFGPKGQKQLWFKLVWHN 439
           ++K+++ IRD +   E  +  A   ++ WN +      + Y+Y         W  +VW+ 
Sbjct: 264 LIKKIIHIRDIITIKEDNVEAAKQTLNSWNSNEQLLAGKAYDYIRGVKPAVNWNSVVWNP 323

Query: 440 SIPPKFSFFMWSIPTMDTLLFKD 508
           +IP K SF +W + T + LL  D
Sbjct: 324 AIPSKMSFILW-LATKNHLLTLD 345


>ref|XP_006579213.1| PREDICTED: uncharacterized protein LOC102670237 [Glycine max]
          Length = 383

 Score = 40.8 bits (94), Expect(2) = 4e-07
 Identities = 21/63 (33%), Positives = 33/63 (52%)
 Frame = +3

Query: 498 FLKMDTLCRLYRQQEGSILFLFFACVFTADIWKRIRDWARLRKDMLTNRSSLKCLLKENR 677
           FL    LC L   +  S   LFF+C  +  +W  IRDW  L++  ++ + S+  L++  R
Sbjct: 320 FLNKGFLCPLCTNEAESHAHLFFSCRTSLRVWAHIRDWIPLKRQSISLQHSISALIR-RR 378

Query: 678 GTS 686
            TS
Sbjct: 379 ATS 381



 Score = 40.4 bits (93), Expect(2) = 4e-07
 Identities = 22/78 (28%), Positives = 36/78 (46%)
 Frame = +2

Query: 275 LQIRDRLVKAEGLITDAIA*ISLWNCHRTFQTSQGYEYFGPKGQKQLWFKLVWHNSIPPK 454
           + IRD ++  E  I  A   ++ W C+      + Y+Y         W  ++W+  IP K
Sbjct: 240 IHIRDIIISKEENIEVAKLMLNSWGCNEQTLAGKMYDYIRGTRPVVHWSSIIWNPVIPSK 299

Query: 455 FSFFMWSIPTMDTLLFKD 508
            SF +W + T + LL  D
Sbjct: 300 MSFILW-LATKNRLLALD 316


>ref|XP_006595463.1| PREDICTED: uncharacterized protein LOC102660851 [Glycine max]
          Length = 199

 Score = 58.5 bits (140), Expect = 3e-06
 Identities = 25/94 (26%), Positives = 46/94 (48%)
 Frame = +3

Query: 483 RWTHFFLKMDTLCRLYRQQEGSILFLFFACVFTADIWKRIRDWARLRKDMLTNRSSLKCL 662
           R   F +  +T+C+L +++  S+  LFF C  T  +W ++  W  L   +      L  +
Sbjct: 71  RLHRFGMIQETICKLCKEKNESLTHLFFECGMTKTVWDQVLHWLNLNHRIKGWNEELDWI 130

Query: 663 LKENRGTSWRCT*RKLSFAATLYYLWEYRNRVIF 764
           + +     WR +  KL+F   +Y +W +RN  +F
Sbjct: 131 ISQTGKKGWRASILKLAFTEAVYGIWHHRNGTVF 164


>ref|XP_006381710.1| hypothetical protein POPTR_0006s16215g [Populus trichocarpa]
           gi|550336461|gb|ERP59507.1| hypothetical protein
           POPTR_0006s16215g [Populus trichocarpa]
          Length = 155

 Score = 57.0 bits (136), Expect = 9e-06
 Identities = 31/90 (34%), Positives = 51/90 (56%), Gaps = 1/90 (1%)
 Frame = +3

Query: 498 FLKMDTLCRLYRQQEGSILF-LFFACVFTADIWKRIRDWARLRKDMLTNRSSLKCLLKEN 674
           F+  +T C L R  + +    LFFAC +T+ +W++IR W R+ + M T  S+ + L    
Sbjct: 33  FIGTETHCVLCRHHDDNHSHQLFFACNWTSILWRKIRAWLRMNRRMATLNSATRGLSTRK 92

Query: 675 RGTSWRCT*RKLSFAATLYYLWEYRNRVIF 764
           +    R   R++S + T+Y +WE RN+ IF
Sbjct: 93  KNLEARM--RRVSLSITVYLIWEERNKRIF 120


Top