BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Catharanthus23_contig00028492
         (937 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAD24600.1| putative retroelement pol polyprotein [Arabidopsi...   343   5e-92
gb|AAB87099.1| putative retroelement pol polyprotein [Arabidopsi...   335   8e-92
gb|AAM98191.1| unknown protein [Arabidopsis thaliana] gi|3860380...   335   8e-92
dbj|BAB10743.1| retroelement pol polyprotein-like [Arabidopsis t...   339   8e-91
emb|CAA18107.1| LTR retrotransposon like protein [Arabidopsis th...   339   8e-91
emb|CAN73272.1| hypothetical protein VITISV_013115 [Vitis vinifera]   335   1e-90
emb|CAN61658.1| hypothetical protein VITISV_040310 [Vitis vinifera]   334   1e-90
gb|AAG50751.1|AC079733_19 polyprotein, putative [Arabidopsis tha...   338   2e-90
emb|CAN80919.1| hypothetical protein VITISV_002640 [Vitis vinifera]   331   1e-89
emb|CAN83015.1| hypothetical protein VITISV_041694 [Vitis vinifera]   333   2e-89
gb|AAG09097.1|AC009323_8 Putative retroelement polyprotein [Arab...   332   1e-88
emb|CAN82171.1| hypothetical protein VITISV_040546 [Vitis vinifera]   329   2e-88
emb|CAN76645.1| hypothetical protein VITISV_004685 [Vitis vinifera]   325   1e-86
dbj|BAB10837.1| retroelement pol polyprotein-like [Arabidopsis t...   323   8e-86
gb|AAD19784.1| putative retroelement pol polyprotein [Arabidopsi...   320   1e-85
dbj|BAA97287.1| retroelement pol polyprotein-like [Arabidopsis t...   310   5e-83
emb|CAN82073.1| hypothetical protein VITISV_036538 [Vitis vinifera]   301   3e-82
emb|CAN67762.1| hypothetical protein VITISV_040650 [Vitis vinifera]   304   1e-81
gb|AAD23883.1| putative retroelement pol polyprotein [Arabidopsi...   304   4e-81
gb|AAC98469.1| putative retroelement pol polyprotein [Arabidopsi...   285   2e-76

>gb|AAD24600.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1333

 Score =  343 bits (880), Expect(2) = 5e-92
 Identities = 168/291 (57%), Positives = 204/291 (70%)
 Frame = +2

Query: 65   PPRKRALGS*WVYRIKYKSDGTIERYKARLVIFGNTQQEEIDYTEIFAPVAKMVTVRTML 244
            PP KRA+GS WVY++K+ SDG++ERYKARLV  GN Q+E  DY E FAPVAKM TVR  L
Sbjct: 859  PPGKRAIGSQWVYKVKHNSDGSVERYKARLVALGNKQKEGEDYGETFAPVAKMATVRLFL 918

Query: 245  SVAATRNWEVHQMDVHNAFLHGDLTEEVYMKISPGFRASNPHKGCRLNK*LYGLRQAPRC 424
             VA  RNWE+HQMDVHNAFLHGDL EEVYMK+ PGF AS+P+K CRL K LYGL+QAPRC
Sbjct: 919  DVAVKRNWEIHQMDVHNAFLHGDLREEVYMKLPPGFEASHPNKVCRLRKALYGLKQAPRC 978

Query: 425  WFSKLTDSLRQCGFAQSYADYSLFTFRKNKXXXXXXXXXXXXXXSGNNAVCINKFISYLG 604
            WF KLT +L++ GF QS ADYSLFT  K                +GN+     +F  YL 
Sbjct: 979  WFEKLTTALKRYGFQQSLADYSLFTLVKGSVRIKILIYVDDLIITGNSQRATQQFKEYLA 1038

Query: 605  SYFHMKDLGPFNYFLRIEIARSQAGFYLSQYKYALEILSEVEMLGSKPVSTPMELNHQLA 784
            S FHMKDLGP  YFL IE+ARS  G Y+ Q KYAL+I+SE  +LG KP + P+E NH+L 
Sbjct: 1039 SCFHMKDLGPLKYFLGIEVARSTTGIYICQRKYALDIISETGLLGVKPANFPLEQNHKLG 1098

Query: 785  KAAEELCDNPNRYCRLAGKLI*FSITHPDLAYPVHVLAQFM*YPCKEHWDA 937
             +   L  +P RY RL G+LI  ++T  DLA+ VH+LA+FM  P ++HW A
Sbjct: 1099 LSTSPLLTDPQRYRRLVGRLIYLAVTRLDLAFSVHILARFMQEPREDHWAA 1149



 Score = 22.7 bits (47), Expect(2) = 5e-92
 Identities = 8/12 (66%), Positives = 11/12 (91%)
 Frame = +3

Query: 21  IDALEKNNTWTM 56
           IDA E+N+TWT+
Sbjct: 844 IDAQEENHTWTI 855


>gb|AAB87099.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1496

 Score =  335 bits (859), Expect(2) = 8e-92
 Identities = 162/296 (54%), Positives = 206/296 (69%)
 Frame = +2

Query: 50   DYDKSPPRKRALGS*WVYRIKYKSDGTIERYKARLVIFGNTQQEEIDYTEIFAPVAKMVT 229
            D    P  K+A+ S WVY++KY SDGT+ER+KARLV+ GN Q+E +D+ E FAPVAK+ T
Sbjct: 1017 DITDLPHGKKAISSKWVYKLKYNSDGTLERHKARLVVMGNHQKEGVDFKETFAPVAKLTT 1076

Query: 230  VRTMLSVAATRNWEVHQMDVHNAFLHGDLTEEVYMKISPGFRASNPHKGCRLNK*LYGLR 409
            VRT+L+VAA ++WEVHQMDVHNAFLHGDL EEVYM++ PGF+ S+P K CRL K LYGL+
Sbjct: 1077 VRTILAVAAAKDWEVHQMDVHNAFLHGDLEEEVYMRLPPGFKCSDPSKVCRLRKSLYGLK 1136

Query: 410  QAPRCWFSKLTDSLRQCGFAQSYADYSLFTFRKNKXXXXXXXXXXXXXXSGNNAVCINKF 589
            QAPRCWFSKL+ +LR  GF QSY DYSLF+ +                 +GNN   I++F
Sbjct: 1137 QAPRCWFSKLSTALRNIGFTQSYEDYSLFSLKNGDTIIHVLVYVDDLIVAGNNLDAIDRF 1196

Query: 590  ISYLGSYFHMKDLGPFNYFLRIEIARSQAGFYLSQYKYALEILSEVEMLGSKPVSTPMEL 769
             S L   FHMKDLG   YFL +E++R   GF LSQ KYAL+I+ E  +LG KP + P+ L
Sbjct: 1197 KSQLHKCFHMKDLGKLKYFLGLEVSRGPDGFCLSQRKYALDIVKETGLLGCKPSAVPIAL 1256

Query: 770  NHQLAKAAEELCDNPNRYCRLAGKLI*FSITHPDLAYPVHVLAQFM*YPCKEHWDA 937
            NH+LA     +  NP +Y RL G+ I  +IT PDL+Y VH+L+QFM  P   HW+A
Sbjct: 1257 NHKLASITGPVFTNPEQYRRLVGRFIYLTITRPDLSYAVHILSQFMQAPLVAHWEA 1312



 Score = 30.0 bits (66), Expect(2) = 8e-92
 Identities = 12/19 (63%), Positives = 16/19 (84%)
 Frame = +3

Query: 6    AMKQEIDALEKNNTWTMTN 62
            AM +EIDALE N+TW +T+
Sbjct: 1002 AMSKEIDALEANHTWDITD 1020


>gb|AAM98191.1| unknown protein [Arabidopsis thaliana] gi|38603804|gb|AAR24647.1|
            At2g23330 [Arabidopsis thaliana]
            gi|110742535|dbj|BAE99183.1| putative retroelement pol
            polyprotein [Arabidopsis thaliana]
          Length = 776

 Score =  335 bits (859), Expect(2) = 8e-92
 Identities = 162/296 (54%), Positives = 206/296 (69%)
 Frame = +2

Query: 50   DYDKSPPRKRALGS*WVYRIKYKSDGTIERYKARLVIFGNTQQEEIDYTEIFAPVAKMVT 229
            D    P  K+A+ S WVY++KY SDGT+ER+KARLV+ GN Q+E +D+ E FAPVAK+ T
Sbjct: 297  DITDLPHGKKAISSKWVYKLKYNSDGTLERHKARLVVMGNHQKEGVDFKETFAPVAKLTT 356

Query: 230  VRTMLSVAATRNWEVHQMDVHNAFLHGDLTEEVYMKISPGFRASNPHKGCRLNK*LYGLR 409
            VRT+L+VAA ++WEVHQMDVHNAFLHGDL EEVYM++ PGF+ S+P K CRL K LYGL+
Sbjct: 357  VRTILAVAAAKDWEVHQMDVHNAFLHGDLEEEVYMRLPPGFKCSDPSKVCRLRKSLYGLK 416

Query: 410  QAPRCWFSKLTDSLRQCGFAQSYADYSLFTFRKNKXXXXXXXXXXXXXXSGNNAVCINKF 589
            QAPRCWFSKL+ +LR  GF QSY DYSLF+ +                 +GNN   I++F
Sbjct: 417  QAPRCWFSKLSTALRNIGFTQSYEDYSLFSLKNGDTIIHVLVYVDDLIVAGNNLDAIDRF 476

Query: 590  ISYLGSYFHMKDLGPFNYFLRIEIARSQAGFYLSQYKYALEILSEVEMLGSKPVSTPMEL 769
             S L   FHMKDLG   YFL +E++R   GF LSQ KYAL+I+ E  +LG KP + P+ L
Sbjct: 477  KSQLHKCFHMKDLGKLKYFLGLEVSRGPDGFCLSQRKYALDIVKETGLLGCKPSAVPIAL 536

Query: 770  NHQLAKAAEELCDNPNRYCRLAGKLI*FSITHPDLAYPVHVLAQFM*YPCKEHWDA 937
            NH+LA     +  NP +Y RL G+ I  +IT PDL+Y VH+L+QFM  P   HW+A
Sbjct: 537  NHKLASITGPVFTNPEQYRRLVGRFIYLTITRPDLSYAVHILSQFMQAPLVAHWEA 592



 Score = 30.0 bits (66), Expect(2) = 8e-92
 Identities = 12/19 (63%), Positives = 16/19 (84%)
 Frame = +3

Query: 6   AMKQEIDALEKNNTWTMTN 62
           AM +EIDALE N+TW +T+
Sbjct: 282 AMSKEIDALEANHTWDITD 300


>dbj|BAB10743.1| retroelement pol polyprotein-like [Arabidopsis thaliana]
          Length = 1109

 Score =  339 bits (870), Expect = 8e-91
 Identities = 165/291 (56%), Positives = 211/291 (72%)
 Frame = +2

Query: 65   PPRKRALGS*WVYRIKYKSDGTIERYKARLVIFGNTQQEEIDYTEIFAPVAKMVTVRTML 244
            PP KRALG+ WVY+IKY+SDG IERYKARLV+ GN Q+E +DY E FAPVAKM TVR  L
Sbjct: 635  PPGKRALGNKWVYKIKYRSDGAIERYKARLVVLGNCQKEGVDYDETFAPVAKMSTVRLFL 694

Query: 245  SVAATRNWEVHQMDVHNAFLHGDLTEEVYMKISPGFRASNPHKGCRLNK*LYGLRQAPRC 424
             VAA R+W VHQMDVHNAFLHGDL EEVYMK+  GF+  +P K CRL+K LYGL+QAPRC
Sbjct: 695  GVAAARDWHVHQMDVHNAFLHGDLKEEVYMKLPQGFQCDDPSKVCRLHKSLYGLKQAPRC 754

Query: 425  WFSKLTDSLRQCGFAQSYADYSLFTFRKNKXXXXXXXXXXXXXXSGNNAVCINKFISYLG 604
            WFSKL+ +L+Q GF QS +DYSLF++  +               SG+    + +F SYL 
Sbjct: 755  WFSKLSSALKQYGFTQSLSDYSLFSYNNDGVFVHVLVYVDDLIISGSCPDAVAQFKSYLE 814

Query: 605  SYFHMKDLGPFNYFLRIEIARSQAGFYLSQYKYALEILSEVEMLGSKPVSTPMELNHQLA 784
            S FHMKDLG   YFL IE++R+  GFYLSQ KY L+I+SE+ +LG++P + P+E NH+L+
Sbjct: 815  SCFHMKDLGLLKYFLGIEVSRNAQGFYLSQRKYVLDIISEMGLLGARPSAFPLEQNHKLS 874

Query: 785  KAAEELCDNPNRYCRLAGKLI*FSITHPDLAYPVHVLAQFM*YPCKEHWDA 937
             +   L  + +RY RL G+LI  ++T P+L+Y VH LAQFM  P ++HW+A
Sbjct: 875  LSTSPLLSDSSRYRRLVGRLIYLAVTRPELSYSVHTLAQFMQNPRQDHWNA 925


>emb|CAA18107.1| LTR retrotransposon like protein [Arabidopsis thaliana]
            gi|7269049|emb|CAB79159.1| LTR retrotransposon like
            protein [Arabidopsis thaliana]
          Length = 1109

 Score =  339 bits (870), Expect = 8e-91
 Identities = 165/291 (56%), Positives = 211/291 (72%)
 Frame = +2

Query: 65   PPRKRALGS*WVYRIKYKSDGTIERYKARLVIFGNTQQEEIDYTEIFAPVAKMVTVRTML 244
            PP KRALG+ WVY+IKY+SDG IERYKARLV+ GN Q+E +DY E FAPVAKM TVR  L
Sbjct: 635  PPGKRALGNKWVYKIKYRSDGAIERYKARLVVLGNCQKEGVDYDETFAPVAKMSTVRLFL 694

Query: 245  SVAATRNWEVHQMDVHNAFLHGDLTEEVYMKISPGFRASNPHKGCRLNK*LYGLRQAPRC 424
             VAA R+W VHQMDVHNAFLHGDL EEVYMK+  GF+  +P K CRL+K LYGL+QAPRC
Sbjct: 695  GVAAARDWHVHQMDVHNAFLHGDLKEEVYMKLPQGFQCDDPSKVCRLHKSLYGLKQAPRC 754

Query: 425  WFSKLTDSLRQCGFAQSYADYSLFTFRKNKXXXXXXXXXXXXXXSGNNAVCINKFISYLG 604
            WFSKL+ +L+Q GF QS +DYSLF++  +               SG+    + +F SYL 
Sbjct: 755  WFSKLSSALKQYGFTQSLSDYSLFSYNNDGVFVHVLVYVDDLIISGSCPDAVAQFKSYLE 814

Query: 605  SYFHMKDLGPFNYFLRIEIARSQAGFYLSQYKYALEILSEVEMLGSKPVSTPMELNHQLA 784
            S FHMKDLG   YFL IE++R+  GFYLSQ KY L+I+SE+ +LG++P + P+E NH+L+
Sbjct: 815  SCFHMKDLGLLKYFLGIEVSRNAQGFYLSQRKYVLDIISEMGLLGARPSAFPLEQNHKLS 874

Query: 785  KAAEELCDNPNRYCRLAGKLI*FSITHPDLAYPVHVLAQFM*YPCKEHWDA 937
             +   L  + +RY RL G+LI  ++T P+L+Y VH LAQFM  P ++HW+A
Sbjct: 875  LSTSPLLSDSSRYRRLVGRLIYLAVTRPELSYSVHTLAQFMQNPRQDHWNA 925


>emb|CAN73272.1| hypothetical protein VITISV_013115 [Vitis vinifera]
          Length = 1178

 Score =  335 bits (858), Expect(2) = 1e-90
 Identities = 166/291 (57%), Positives = 202/291 (69%)
 Frame = +2

Query: 65   PPRKRALGS*WVYRIKYKSDGTIERYKARLVIFGNTQQEEIDYTEIFAPVAKMVTVRTML 244
            P  KRALGS WVYR KY S+G IER K+RLV+ GN Q+  IDY E F+PVAKM TVR  L
Sbjct: 704  PKGKRALGSQWVYRTKYFSNGDIERLKSRLVVLGNHQEAGIDYHETFSPVAKMTTVRAFL 763

Query: 245  SVAATRNWEVHQMDVHNAFLHGDLTEEVYMKISPGFRASNPHKGCRLNK*LYGLRQAPRC 424
            ++AA++NWE+HQMDVHNAFLHGDL EEVYMK+ PGF  S+P+  CRL K LYGL+QAPRC
Sbjct: 764  AIAASKNWELHQMDVHNAFLHGDLEEEVYMKLPPGFERSDPNLVCRLRKSLYGLKQAPRC 823

Query: 425  WFSKLTDSLRQCGFAQSYADYSLFTFRKNKXXXXXXXXXXXXXXSGNNAVCINKFISYLG 604
            WFSKL  +L+  GF QSY+DYSLFT+                  SGN++  +  F +YL 
Sbjct: 824  WFSKLVTALKGYGFLQSYSDYSLFTYTTGNVQINVLVYVDDLIISGNDSAALKTFKAYLS 883

Query: 605  SYFHMKDLGPFNYFLRIEIARSQAGFYLSQYKYALEILSEVEMLGSKPVSTPMELNHQLA 784
              F MKDLG   YFL IE+ARS AG +L Q KY L+I+SE  +LG+KP   P+E NH+L 
Sbjct: 884  DCFKMKDLGVLKYFLGIEVARSSAGLFLCQRKYTLDIVSEAGLLGAKPCGFPIEQNHRLX 943

Query: 785  KAAEELCDNPNRYCRLAGKLI*FSITHPDLAYPVHVLAQFM*YPCKEHWDA 937
             A  EL  NP  Y RL G+LI  ++T PDLAY VH+L+QFM  P  EHW+A
Sbjct: 944  LANGELLSNPESYRRLVGRLIYLAVTRPDLAYSVHILSQFMXEPRIEHWEA 994



 Score = 26.6 bits (57), Expect(2) = 1e-90
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = +3

Query: 6   AMKQEIDALEKNNTWTM 56
           +M +EI ALE+N TWT+
Sbjct: 684 SMHEEIRALEENGTWTL 700


>emb|CAN61658.1| hypothetical protein VITISV_040310 [Vitis vinifera]
          Length = 1461

 Score =  334 bits (857), Expect(2) = 1e-90
 Identities = 166/291 (57%), Positives = 203/291 (69%)
 Frame = +2

Query: 65   PPRKRALGS*WVYRIKYKSDGTIERYKARLVIFGNTQQEEIDYTEIFAPVAKMVTVRTML 244
            P  KRALGS WVYR KY S+G IER K+RLV+ GN Q+  IDY E F+PVAKM TVRT L
Sbjct: 987  PKGKRALGSQWVYRTKYFSNGDIERLKSRLVVLGNHQEAGIDYHETFSPVAKMTTVRTFL 1046

Query: 245  SVAATRNWEVHQMDVHNAFLHGDLTEEVYMKISPGFRASNPHKGCRLNK*LYGLRQAPRC 424
            ++AA++NWE+HQMDVHNAFLHGDL EEVYMK+ PGF  S+P+  CRL K LYGL+QAPRC
Sbjct: 1047 AIAASKNWELHQMDVHNAFLHGDLEEEVYMKLPPGFERSDPNLVCRLRKSLYGLKQAPRC 1106

Query: 425  WFSKLTDSLRQCGFAQSYADYSLFTFRKNKXXXXXXXXXXXXXXSGNNAVCINKFISYLG 604
            WF+KL  +L+  GF QSY+DYSLFT+ K                SGN++  +  F +YL 
Sbjct: 1107 WFAKLVTALKGYGFLQSYSDYSLFTYTKGNVQINVLVYVDDLIISGNDSAALKTFKAYLS 1166

Query: 605  SYFHMKDLGPFNYFLRIEIARSQAGFYLSQYKYALEILSEVEMLGSKPVSTPMELNHQLA 784
              F MKDLG   YFL IE+ARS AG +L Q KY L+I+SE  +LG+KP   P+E NH+L 
Sbjct: 1167 DCFKMKDLGVLKYFLGIEVARSSAGLFLCQRKYTLDIVSEAGLLGAKPCGFPIEQNHRLG 1226

Query: 785  KAAEELCDNPNRYCRLAGKLI*FSITHPDLAYPVHVLAQFM*YPCKEHWDA 937
             A  EL  N   Y RL G+LI  ++T PDLAY VH+L+QFM  P  EHW+A
Sbjct: 1227 LANGELLSNLESYRRLVGRLIYLAVTRPDLAYSVHILSQFMQEPRIEHWEA 1277



 Score = 26.6 bits (57), Expect(2) = 1e-90
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = +3

Query: 6    AMKQEIDALEKNNTWTM 56
            +M +EI ALE+N TWT+
Sbjct: 967  SMHEEIRALEENGTWTL 983


>gb|AAG50751.1|AC079733_19 polyprotein, putative [Arabidopsis thaliana]
          Length = 1468

 Score =  338 bits (867), Expect = 2e-90
 Identities = 165/291 (56%), Positives = 210/291 (72%)
 Frame = +2

Query: 65   PPRKRALGS*WVYRIKYKSDGTIERYKARLVIFGNTQQEEIDYTEIFAPVAKMVTVRTML 244
            PP KRALG+ WVY+IKY+SDG IERYKARLV+ GN Q+E +DY E FAPVAKM TVR  L
Sbjct: 994  PPGKRALGNKWVYKIKYRSDGAIERYKARLVVLGNCQKEGVDYDETFAPVAKMSTVRLFL 1053

Query: 245  SVAATRNWEVHQMDVHNAFLHGDLTEEVYMKISPGFRASNPHKGCRLNK*LYGLRQAPRC 424
             VAA R+W VHQMDVHNAFLHGDL EEVYMK+  GF+  +P K CRL+K LYGL+QAPRC
Sbjct: 1054 GVAAARDWHVHQMDVHNAFLHGDLKEEVYMKLPQGFQCDDPSKVCRLHKSLYGLKQAPRC 1113

Query: 425  WFSKLTDSLRQCGFAQSYADYSLFTFRKNKXXXXXXXXXXXXXXSGNNAVCINKFISYLG 604
            WFSKL+ +L+Q GF QS +DYSLF++  +               SG+    + +F SYL 
Sbjct: 1114 WFSKLSSALKQYGFTQSLSDYSLFSYNNDGIFVHVLVYVDDLIISGSCPDAVAQFKSYLE 1173

Query: 605  SYFHMKDLGPFNYFLRIEIARSQAGFYLSQYKYALEILSEVEMLGSKPVSTPMELNHQLA 784
            S FHMKDLG   YFL IE++R+  GFYLSQ KY L+I+SE+ +LG++P + P+E NH+L+
Sbjct: 1174 SCFHMKDLGLLKYFLGIEVSRNAQGFYLSQRKYVLDIISEMGLLGARPSAFPLEQNHKLS 1233

Query: 785  KAAEELCDNPNRYCRLAGKLI*FSITHPDLAYPVHVLAQFM*YPCKEHWDA 937
             +   L  + +RY RL G+LI   +T P+L+Y VH LAQFM  P ++HW+A
Sbjct: 1234 LSTSPLLSDSSRYRRLVGRLIYLVVTRPELSYSVHTLAQFMQNPRQDHWNA 1284


>emb|CAN80919.1| hypothetical protein VITISV_002640 [Vitis vinifera]
          Length = 1450

 Score =  331 bits (849), Expect(2) = 1e-89
 Identities = 163/291 (56%), Positives = 203/291 (69%)
 Frame = +2

Query: 65   PPRKRALGS*WVYRIKYKSDGTIERYKARLVIFGNTQQEEIDYTEIFAPVAKMVTVRTML 244
            P  KRALGS WVYR KY S+G IER K+RLV+ GN Q+  IDY E F+PVAKM TVR  L
Sbjct: 987  PKGKRALGSQWVYRTKYFSNGDIERLKSRLVVLGNHQEAGIDYHETFSPVAKMTTVRAFL 1046

Query: 245  SVAATRNWEVHQMDVHNAFLHGDLTEEVYMKISPGFRASNPHKGCRLNK*LYGLRQAPRC 424
            ++AA++NWE+HQMDVHNAFLHGDL EEVYMK+ PGF +S+P+  CRL K LYGL+QAPRC
Sbjct: 1047 AIAASKNWELHQMDVHNAFLHGDLEEEVYMKLPPGFESSDPNLVCRLRKSLYGLKQAPRC 1106

Query: 425  WFSKLTDSLRQCGFAQSYADYSLFTFRKNKXXXXXXXXXXXXXXSGNNAVCINKFISYLG 604
            WF+KL  +L+  GF QSY++YSLFT+ K                S N++  +  F +YL 
Sbjct: 1107 WFAKLVTALKGYGFLQSYSNYSLFTYTKGNVQINVLVYVDDLIISRNDSAALKTFKAYLN 1166

Query: 605  SYFHMKDLGPFNYFLRIEIARSQAGFYLSQYKYALEILSEVEMLGSKPVSTPMELNHQLA 784
              F MKDLG   YFL IE+ARS AG +L Q KY L+I+SE  +LG+KP   P+E NH+L 
Sbjct: 1167 DCFKMKDLGVLKYFLGIEVARSSAGLFLCQRKYTLDIVSETGLLGAKPCGFPIEQNHRLG 1226

Query: 785  KAAEELCDNPNRYCRLAGKLI*FSITHPDLAYPVHVLAQFM*YPCKEHWDA 937
             A  EL  NP  Y RL G+LI  ++T PDLAY VH+++QFM  P  EHW+A
Sbjct: 1227 LANGELLSNPESYRRLVGRLIYLAVTRPDLAYSVHIISQFMQEPRIEHWEA 1277



 Score = 26.6 bits (57), Expect(2) = 1e-89
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = +3

Query: 6    AMKQEIDALEKNNTWTM 56
            +M +EI ALE+N TWT+
Sbjct: 967  SMHEEIRALEENGTWTL 983


>emb|CAN83015.1| hypothetical protein VITISV_041694 [Vitis vinifera]
          Length = 1099

 Score =  333 bits (853), Expect(2) = 2e-89
 Identities = 165/291 (56%), Positives = 201/291 (69%)
 Frame = +2

Query: 65   PPRKRALGS*WVYRIKYKSDGTIERYKARLVIFGNTQQEEIDYTEIFAPVAKMVTVRTML 244
            P  KRALGS WVYR KY S+G IER K+RLV+ GN Q+  IDY E F+PVAKM  VR  L
Sbjct: 625  PKGKRALGSQWVYRTKYFSNGDIERLKSRLVVLGNHQEAGIDYHETFSPVAKMTMVRAFL 684

Query: 245  SVAATRNWEVHQMDVHNAFLHGDLTEEVYMKISPGFRASNPHKGCRLNK*LYGLRQAPRC 424
            ++AA++NWE+HQMDVHNAFLHGDL EEVYMK+ PGF  S+P+  CRL K LYGL+QAPRC
Sbjct: 685  AIAASKNWELHQMDVHNAFLHGDLEEEVYMKLPPGFERSDPNLVCRLRKSLYGLKQAPRC 744

Query: 425  WFSKLTDSLRQCGFAQSYADYSLFTFRKNKXXXXXXXXXXXXXXSGNNAVCINKFISYLG 604
            WFSKL  +L+  GF QSY+DYSLFT+                  SGN++  +  F +YL 
Sbjct: 745  WFSKLVTALKGYGFLQSYSDYSLFTYTTGNVQINVLVYVDDLIISGNDSAALKTFKAYLS 804

Query: 605  SYFHMKDLGPFNYFLRIEIARSQAGFYLSQYKYALEILSEVEMLGSKPVSTPMELNHQLA 784
              F MKDLG   YFL IE+ARS AG +L Q KY L+I+SE  +LG+KP   P+E NH+L 
Sbjct: 805  DCFKMKDLGVLKYFLGIEVARSSAGLFLCQRKYTLDIVSEAGLLGAKPCGFPIEQNHRLG 864

Query: 785  KAAEELCDNPNRYCRLAGKLI*FSITHPDLAYPVHVLAQFM*YPCKEHWDA 937
             A  EL  NP  Y RL G+LI  ++T PDLAY VH+L+QFM  P  EHW+A
Sbjct: 865  LANGELLSNPESYRRLVGRLIYLAVTRPDLAYSVHILSQFMHEPRIEHWEA 915



 Score = 24.3 bits (51), Expect(2) = 2e-89
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +3

Query: 6   AMKQEIDALEKNNTWTM 56
           +M +EI ALE+N TW +
Sbjct: 605 SMHEEIRALEENGTWXL 621


>gb|AAG09097.1|AC009323_8 Putative retroelement polyprotein [Arabidopsis thaliana]
          Length = 1486

 Score =  332 bits (851), Expect = 1e-88
 Identities = 163/291 (56%), Positives = 200/291 (68%)
 Frame = +2

Query: 65   PPRKRALGS*WVYRIKYKSDGTIERYKARLVIFGNTQQEEIDYTEIFAPVAKMVTVRTML 244
            PP K+ALG  WV+R+KYKSDGT+ER+KARLV+ GN Q E +DYTE FAPVAKMVTVR  L
Sbjct: 1012 PPGKKALGCKWVFRLKYKSDGTLERHKARLVVLGNNQTEGLDYTETFAPVAKMVTVRAFL 1071

Query: 245  SVAATRNWEVHQMDVHNAFLHGDLTEEVYMKISPGFRASNPHKGCRLNK*LYGLRQAPRC 424
                + +WEVHQMDVHNAFLHGDL EEVYM+  PGFR  +  K CRL K LYGL+QAPRC
Sbjct: 1072 QQVVSLDWEVHQMDVHNAFLHGDLDEEVYMQFPPGFRTGDKTKVCRLRKSLYGLKQAPRC 1131

Query: 425  WFSKLTDSLRQCGFAQSYADYSLFTFRKNKXXXXXXXXXXXXXXSGNNAVCINKFISYLG 604
            WF+KLT +L+  GF Q  +DYSLF F KN               +G     I +F  YL 
Sbjct: 1132 WFAKLTSALKNYGFIQDISDYSLFIFHKNGVRLHVLVYVDDLIITGTTIAVITEFKHYLS 1191

Query: 605  SYFHMKDLGPFNYFLRIEIARSQAGFYLSQYKYALEILSEVEMLGSKPVSTPMELNHQLA 784
            S F+MKDLG   YFL IE+ARS  G YL Q KYAL+I++E  +LG KP S P++ NH+LA
Sbjct: 1192 SCFYMKDLGILRYFLGIEVARSPEGIYLCQRKYALDIITETGLLGVKPASFPLDQNHKLA 1251

Query: 785  KAAEELCDNPNRYCRLAGKLI*FSITHPDLAYPVHVLAQFM*YPCKEHWDA 937
             A  E  D+P RY RL G++I  + T P+L+Y +H+L+QFM  P   HW+A
Sbjct: 1252 FATGETIDDPLRYRRLVGRIIYLATTRPELSYVIHILSQFMHNPKPAHWEA 1302


>emb|CAN82171.1| hypothetical protein VITISV_040546 [Vitis vinifera]
          Length = 1129

 Score =  329 bits (843), Expect(2) = 2e-88
 Identities = 163/290 (56%), Positives = 202/290 (69%)
 Frame = +2

Query: 65   PPRKRALGS*WVYRIKYKSDGTIERYKARLVIFGNTQQEEIDYTEIFAPVAKMVTVRTML 244
            P  KRALGS WVYR KY S+G IER K+RLV+ GN Q+  IDY E F+PVAKM TVR  L
Sbjct: 655  PKGKRALGSQWVYRTKYFSNGDIERLKSRLVVLGNHQEAGIDYHETFSPVAKMTTVRAFL 714

Query: 245  SVAATRNWEVHQMDVHNAFLHGDLTEEVYMKISPGFRASNPHKGCRLNK*LYGLRQAPRC 424
            ++AA++NWE+HQMDVHNAFLHGDL EEVYMK+ PGF +S+P+  CRL K LYGL+QAPRC
Sbjct: 715  AIAASKNWELHQMDVHNAFLHGDLEEEVYMKLPPGFESSDPNLVCRLWKSLYGLKQAPRC 774

Query: 425  WFSKLTDSLRQCGFAQSYADYSLFTFRKNKXXXXXXXXXXXXXXSGNNAVCINKFISYLG 604
            WF+KL  +L+  GF QSY+DYSLFT+ K                SGN++  +  F +YL 
Sbjct: 775  WFAKLVTALKGYGFLQSYSDYSLFTYTKGNVQINVLVYVDDLIISGNDSAALKTFKAYLS 834

Query: 605  SYFHMKDLGPFNYFLRIEIARSQAGFYLSQYKYALEILSEVEMLGSKPVSTPMELNHQLA 784
              F MKDLG   YFL IE+ARS AG +L Q KY L+I+SE  +LG+KP    +E NH+L 
Sbjct: 835  DCFKMKDLGVLKYFLGIEVARSSAGLFLCQRKYTLDIVSEAGLLGAKPCGFSIEQNHRLG 894

Query: 785  KAAEELCDNPNRYCRLAGKLI*FSITHPDLAYPVHVLAQFM*YPCKEHWD 934
             A  EL  NP  Y RL G+LI  ++T P+LAY VH+L+QFM  P  EHW+
Sbjct: 895  LANGELLSNPESYRRLVGRLIYLAVTRPNLAYSVHILSQFMQEPRIEHWE 944



 Score = 25.0 bits (53), Expect(2) = 2e-88
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +3

Query: 6   AMKQEIDALEKNNTWTM 56
           +M +EI ALE+N  WT+
Sbjct: 635 SMHEEIQALEENGMWTL 651


>emb|CAN76645.1| hypothetical protein VITISV_004685 [Vitis vinifera]
          Length = 1196

 Score =  325 bits (834), Expect = 1e-86
 Identities = 161/291 (55%), Positives = 199/291 (68%)
 Frame = +2

Query: 65   PPRKRALGS*WVYRIKYKSDGTIERYKARLVIFGNTQQEEIDYTEIFAPVAKMVTVRTML 244
            P  K ALGS WVYR KY S+G IER K RLV+ GN Q+ +IDY E F+P+AKM TVR  L
Sbjct: 831  PNGKCALGSQWVYRTKYFSNGDIERLKYRLVVLGNHQEADIDYHETFSPIAKMTTVRAFL 890

Query: 245  SVAATRNWEVHQMDVHNAFLHGDLTEEVYMKISPGFRASNPHKGCRLNK*LYGLRQAPRC 424
            ++AA++NWE+HQMDVHNAFLHGDL EEVYMK+ PGF + +P+  CRL K LYGL+QAPRC
Sbjct: 891  AIAASKNWELHQMDVHNAFLHGDLEEEVYMKLPPGFESXDPNLVCRLRKSLYGLKQAPRC 950

Query: 425  WFSKLTDSLRQCGFAQSYADYSLFTFRKNKXXXXXXXXXXXXXXSGNNAVCINKFISYLG 604
            WF+KL   L+  GF QSY+DYSLFT+ K                SGN++  +  F +YL 
Sbjct: 951  WFAKLVTXLKGYGFLQSYSDYSLFTYTKGNVQINVLVYVDDLIISGNDSAALKTFKAYLS 1010

Query: 605  SYFHMKDLGPFNYFLRIEIARSQAGFYLSQYKYALEILSEVEMLGSKPVSTPMELNHQLA 784
              F MK+LG   YFL IE+ARS AG +L Q KY L+I+SE  +LG+KP    +E NH+L 
Sbjct: 1011 DCFKMKBLGVLKYFLGIEVARSSAGLFLCQXKYTLDIVSEXGLLGAKPCGFXIEQNHRLG 1070

Query: 785  KAAEELCDNPNRYCRLAGKLI*FSITHPDLAYPVHVLAQFM*YPCKEHWDA 937
             A  EL  NP  Y RL G+LI  ++T PDLAY VH L+QFM  P  EHW+A
Sbjct: 1071 LANGELLSNPESYRRLVGRLIYLAVTRPDLAYSVHXLSQFMQEPRIEHWEA 1121


>dbj|BAB10837.1| retroelement pol polyprotein-like [Arabidopsis thaliana]
          Length = 1462

 Score =  323 bits (827), Expect = 8e-86
 Identities = 161/291 (55%), Positives = 201/291 (69%)
 Frame = +2

Query: 65   PPRKRALGS*WVYRIKYKSDGTIERYKARLVIFGNTQQEEIDYTEIFAPVAKMVTVRTML 244
            PP K+ALG  WV+R+KYKSDGT+ER+KARLV+ GN Q E IDY+E FAPVAKMVTVR  L
Sbjct: 974  PPGKKALGCKWVFRLKYKSDGTLERHKARLVVLGNKQTEGIDYSETFAPVAKMVTVRAFL 1033

Query: 245  SVAATRNWEVHQMDVHNAFLHGDLTEEVYMKISPGFRASNPHKGCRLNK*LYGLRQAPRC 424
               A+ +WEVHQMDVHNAFLHGDL EEVY+K  PGF + +  K CRL K LYGL+QAPRC
Sbjct: 1034 QQVASLDWEVHQMDVHNAFLHGDLDEEVYIKFPPGFGSDDNRKVCRLRKALYGLKQAPRC 1093

Query: 425  WFSKLTDSLRQCGFAQSYADYSLFTFRKNKXXXXXXXXXXXXXXSGNNAVCINKFISYLG 604
            WF+KLT +L   GF Q  +DYSLFT  +N               +G++   I KF  YL 
Sbjct: 1094 WFAKLTTALNDYGFIQDISDYSLFTMERNGIRLHILVYVDDLIITGSSLDVITKFKGYLS 1153

Query: 605  SYFHMKDLGPFNYFLRIEIARSQAGFYLSQYKYALEILSEVEMLGSKPVSTPMELNHQLA 784
            S F+MKDLG   YFL IE+ARS AG YL Q KYA++I++E  +LG  P S P+E NH+LA
Sbjct: 1154 SCFYMKDLGILRYFLGIEVARSPAGIYLCQRKYAIDIITETGLLGVWPASHPLEQNHKLA 1213

Query: 785  KAAEELCDNPNRYCRLAGKLI*FSITHPDLAYPVHVLAQFM*YPCKEHWDA 937
             A  +   +P+RY RL G+LI    T P+L+Y +H+L+QFM  P  +H +A
Sbjct: 1214 LAFGDTISDPSRYRRLVGRLIYLGTTRPELSYAIHMLSQFMSDPKADHMEA 1264


>gb|AAD19784.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1501

 Score =  320 bits (820), Expect(2) = 1e-85
 Identities = 160/291 (54%), Positives = 195/291 (67%)
 Frame = +2

Query: 65   PPRKRALGS*WVYRIKYKSDGTIERYKARLVIFGNTQQEEIDYTEIFAPVAKMVTVRTML 244
            PP K A+GS WV++ KY SDGT+ERYKARLV+ GN Q E  DY E FAPV +M TVRT+L
Sbjct: 1027 PPGKVAIGSQWVFKTKYNSDGTVERYKARLVVQGNKQVEGEDYKETFAPVVRMTTVRTLL 1086

Query: 245  SVAATRNWEVHQMDVHNAFLHGDLTEEVYMKISPGFRASNPHKGCRLNK*LYGLRQAPRC 424
               A   WEV+QMDVHNAFLHGDL EEVYMK+ PGFR S+P K CRL K LYGL+QAPRC
Sbjct: 1087 RNVAANQWEVYQMDVHNAFLHGDLEEEVYMKLPPGFRHSHPDKVCRLRKSLYGLKQAPRC 1146

Query: 425  WFSKLTDSLRQCGFAQSYADYSLFTFRKNKXXXXXXXXXXXXXXSGNNAVCINKFISYLG 604
            WF KL+DSL + GF QSY DYSLF++ +N                GN+   + KF  YL 
Sbjct: 1147 WFKKLSDSLLRFGFVQSYEDYSLFSYTRNNIELRVLIYVDDLLICGNDGYMLQKFKDYLS 1206

Query: 605  SYFHMKDLGPFNYFLRIEIARSQAGFYLSQYKYALEILSEVEMLGSKPVSTPMELNHQLA 784
              F MKDLG   YFL IE++R   G +LSQ KYAL+++++   LGS+P  TP+E NH LA
Sbjct: 1207 RCFSMKDLGKLKYFLGIEVSRGPEGIFLSQRKYALDVIADSGNLGSRPAHTPLEQNHHLA 1266

Query: 785  KAAEELCDNPNRYCRLAGKLI*FSITHPDLAYPVHVLAQFM*YPCKEHWDA 937
                 L  +P  Y RL G+L+    T P+L+Y VHVLAQFM  P + H+DA
Sbjct: 1267 SDDGPLLSDPKPYRRLVGRLLYLLHTRPELSYSVHVLAQFMQNPREAHFDA 1317



 Score = 24.6 bits (52), Expect(2) = 1e-85
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +3

Query: 6    AMKQEIDALEKNNTWTMTN 62
            AM  E+DALE N TW + +
Sbjct: 1007 AMFTEVDALEINKTWDIVD 1025


>dbj|BAA97287.1| retroelement pol polyprotein-like [Arabidopsis thaliana]
          Length = 1491

 Score =  310 bits (793), Expect(2) = 5e-83
 Identities = 155/291 (53%), Positives = 193/291 (66%)
 Frame = +2

Query: 65   PPRKRALGS*WVYRIKYKSDGTIERYKARLVIFGNTQQEEIDYTEIFAPVAKMVTVRTML 244
            P  K A+GS WVY+ K+ +DGT+ERYKARLV+ GN Q E  DYTE FAPV KM TVRT+L
Sbjct: 1017 PTGKVAIGSQWVYKTKFNADGTVERYKARLVVQGNNQIEGEDYTETFAPVVKMTTVRTLL 1076

Query: 245  SVAATRNWEVHQMDVHNAFLHGDLTEEVYMKISPGFRASNPHKGCRLNK*LYGLRQAPRC 424
             + A   WEV+QMDVHNAFLHGDL EEVYMK+ PGFR S+P K CRL K LYGL+QAPRC
Sbjct: 1077 RLVAANQWEVYQMDVHNAFLHGDLEEEVYMKLPPGFRHSHPDKVCRLRKSLYGLKQAPRC 1136

Query: 425  WFSKLTDSLRQCGFAQSYADYSLFTFRKNKXXXXXXXXXXXXXXSGNNAVCINKFISYLG 604
            WF KL+D+L++ GF Q Y DYS F++                   GN+   + KF  YLG
Sbjct: 1137 WFKKLSDALKRFGFIQGYEDYSFFSYSCKGIELRVLVYVDDLIICGNDEYMVQKFKEYLG 1196

Query: 605  SYFHMKDLGPFNYFLRIEIARSQAGFYLSQYKYALEILSEVEMLGSKPVSTPMELNHQLA 784
              F MKDLG   YFL IE++R   G +LSQ KYAL+I+S+   LG++P  TP+E NH LA
Sbjct: 1197 RCFSMKDLGKLKYFLGIEVSRGPDGIFLSQRKYALDIISDSGTLGARPAYTPLEQNHHLA 1256

Query: 785  KAAEELCDNPNRYCRLAGKLI*FSITHPDLAYPVHVLAQFM*YPCKEHWDA 937
                 L  +P  + RL G+L+    T P+L+Y VHVL+QFM  P + H +A
Sbjct: 1257 SDDGPLLQDPKPFRRLVGRLLYLLHTRPELSYSVHVLSQFMQAPREAHLEA 1307



 Score = 26.2 bits (56), Expect(2) = 5e-83
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +3

Query: 6    AMKQEIDALEKNNTWTMTN 62
            AM +E+DALE N TW + +
Sbjct: 997  AMYKEVDALEVNKTWDIVD 1015


>emb|CAN82073.1| hypothetical protein VITISV_036538 [Vitis vinifera]
          Length = 1157

 Score =  301 bits (771), Expect(2) = 3e-82
 Identities = 156/293 (53%), Positives = 193/293 (65%), Gaps = 3/293 (1%)
 Frame = +2

Query: 65   PPRKRALGS*WVYRIKYKSDGTIERYKARLVIFGNTQQEEIDYTEIFAPVAKMVTVRTML 244
            P  K+A+GS WVY+IKY SDG+IER K RLVI GN + E IDY E FAP AKMVTV+T L
Sbjct: 728  PLEKKAIGSKWVYKIKYNSDGSIERCKTRLVILGNKKVEGIDYNETFAPTAKMVTVQTFL 787

Query: 245  SVAATRNWEVHQMDVHNAFLHGDLTEEVYMKISPGFRASNPHKGCRLNK*LYGLRQAPRC 424
            +V A + WE+HQMDVHNAFLHG+L EEVYM++SPGF +  P K C L K LYGL+QAP+C
Sbjct: 788  AVVAMKGWELHQMDVHNAFLHGELDEEVYMQMSPGFASPTPGKVCGLRKSLYGLQQAPKC 847

Query: 425  WFSKLTDSLRQCGFAQSYADYSLFTFRKNKXXXXXXXXXXXXXXSGNNAVCINKFISYLG 604
            WF+KL  +L   GF QSY DYSLFT+                  S N+   + +F  YL 
Sbjct: 848  WFAKLVAALTSYGFKQSYLDYSLFTYEAQHIQLNVLVYVDDLIISRNDGTTVQQFKDYLS 907

Query: 605  SYFHMKDLGPFNYFLRIEIARSQA---GFYLSQYKYALEILSEVEMLGSKPVSTPMELNH 775
              FH+KDLG    FL IE+AR+     G +L Q KY L+I+SEV +LG+K   TP+E NH
Sbjct: 908  RCFHIKDLGKLK-FLGIEVARNDTNSDGIFLCQRKYTLDIISEVGLLGAKSAGTPLEQNH 966

Query: 776  QLAKAAEELCDNPNRYCRLAGKLI*FSITHPDLAYPVHVLAQFM*YPCKEHWD 934
            +LA  A     +P +Y RL G LI   IT P+L+Y VH+LAQFM  P  EHW+
Sbjct: 967  KLALVANFDLRDPRQYRRLVGWLIYLMITQPELSYCVHMLAQFMQQPNDEHWE 1019



 Score = 32.0 bits (71), Expect(2) = 3e-82
 Identities = 14/25 (56%), Positives = 18/25 (72%)
 Frame = +3

Query: 6   AMKQEIDALEKNNTWTMTNRHLEKE 80
           AM++EI ALE N TW + N  LEK+
Sbjct: 708 AMRKEIQALEDNETWIVENLPLEKK 732


>emb|CAN67762.1| hypothetical protein VITISV_040650 [Vitis vinifera]
          Length = 1316

 Score =  304 bits (778), Expect(2) = 1e-81
 Identities = 153/291 (52%), Positives = 198/291 (68%)
 Frame = +2

Query: 65   PPRKRALGS*WVYRIKYKSDGTIERYKARLVIFGNTQQEEIDYTEIFAPVAKMVTVRTML 244
            PP K+A+G  W+Y+IKY +DG+IERYKARLV  G TQ E IDY E F+PVAKM +VR  L
Sbjct: 842  PPEKKAIGCKWIYKIKYNADGSIERYKARLVAQGFTQIEGIDYQEXFSPVAKMTSVRCFL 901

Query: 245  SVAATRNWEVHQMDVHNAFLHGDLTEEVYMKISPGFRASNPHKGCRLNK*LYGLRQAPRC 424
            +V   + WE+HQMDV+NAFLHGDL EEVYMK+  GF+A+  +K C+L K LYGL+QA R 
Sbjct: 902  AVXVAKRWELHQMDVNNAFLHGDLEEEVYMKLPEGFKATGKNKVCKLQKSLYGLKQASRQ 961

Query: 425  WFSKLTDSLRQCGFAQSYADYSLFTFRKNKXXXXXXXXXXXXXXSGNNAVCINKFISYLG 604
            WF+KLT +L++ GF QS ADYSLFT+R+                +GN+      F ++L 
Sbjct: 962  WFAKLTTALKEYGFQQSLADYSLFTYRRGNIVMNLLVYVDDLILAGNDNKVCEAFKNFLD 1021

Query: 605  SYFHMKDLGPFNYFLRIEIARSQAGFYLSQYKYALEILSEVEMLGSKPVSTPMELNHQLA 784
              F +K+LG   Y L IE+AR + G +LSQ KYAL I+ E  +LG++PV  PME NH+LA
Sbjct: 1022 RKFGIKNLGQLKYILGIEVARGKDGLFLSQRKYALNIIKECGLLGARPVEFPMEENHKLA 1081

Query: 785  KAAEELCDNPNRYCRLAGKLI*FSITHPDLAYPVHVLAQFM*YPCKEHWDA 937
             A   L ++P  Y RL G+LI  ++T PDL Y VHVL+QFM  P +EH DA
Sbjct: 1082 LANGRLLNDPGMYRRLVGRLIYLTVTRPDLTYXVHVLSQFMQSPREEHLDA 1132



 Score = 27.3 bits (59), Expect(2) = 1e-81
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +3

Query: 6   AMKQEIDALEKNNTWTMTNRHLEKE 80
           AM +EI+ALE N TW + +   EK+
Sbjct: 822 AMAKEIEALETNQTWKVVDLPPEKK 846


>gb|AAD23883.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1156

 Score =  304 bits (778), Expect(2) = 4e-81
 Identities = 153/288 (53%), Positives = 190/288 (65%)
 Frame = +2

Query: 65   PPRKRALGS*WVYRIKYKSDGTIERYKARLVIFGNTQQEEIDYTEIFAPVAKMVTVRTML 244
            PP K A+GS WVY+ KY +DG+IERYKARLV+ GN Q E  DY E FAPV KM TVRT+L
Sbjct: 674  PPGKVAIGSQWVYKTKYNADGSIERYKARLVVQGNKQVEGEDYNETFAPVVKMTTVRTLL 733

Query: 245  SVAATRNWEVHQMDVHNAFLHGDLTEEVYMKISPGFRASNPHKGCRLNK*LYGLRQAPRC 424
             + A   WEV+QMDV+NAFLHGDL EEVYMK+ PGFR S+P K CRL K LYGL+QAPRC
Sbjct: 734  RLVAANQWEVYQMDVNNAFLHGDLDEEVYMKLPPGFRHSHPDKVCRLRKSLYGLKQAPRC 793

Query: 425  WFSKLTDSLRQCGFAQSYADYSLFTFRKNKXXXXXXXXXXXXXXSGNNAVCINKFISYLG 604
            WF KL+D+L + GF Q + DYS F++ +N                GN+   + KF  YLG
Sbjct: 794  WFKKLSDALLRFGFVQGHEDYSFFSYTRNGIELRVLVYVDDLLICGNDGYMLQKFKEYLG 853

Query: 605  SYFHMKDLGPFNYFLRIEIARSQAGFYLSQYKYALEILSEVEMLGSKPVSTPMELNHQLA 784
              F MKDLG   YFL IE++R   G +LSQ KYAL+I+++   LG +P  TP+E NH LA
Sbjct: 854  RCFSMKDLGKLKYFLGIEVSRGSEGIFLSQRKYALDIITDSGNLGCRPALTPLEQNHHLA 913

Query: 785  KAAEELCDNPNRYCRLAGKLI*FSITHPDLAYPVHVLAQFM*YPCKEH 928
                 L  +   Y RL G+L+    T P+L+Y VHVL+QFM  P + H
Sbjct: 914  TDDGPLLADAKPYRRLVGRLLYLLHTRPELSYSVHVLSQFMQTPREAH 961



 Score = 25.4 bits (54), Expect(2) = 4e-81
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +3

Query: 6   AMKQEIDALEKNNTWTMTN 62
           AM +E+DALE N TW + +
Sbjct: 654 AMFKEVDALEINKTWDIVD 672


>gb|AAC98469.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1102

 Score =  285 bits (728), Expect(2) = 2e-76
 Identities = 144/296 (48%), Positives = 189/296 (63%)
 Frame = +2

Query: 50   DYDKSPPRKRALGS*WVYRIKYKSDGTIERYKARLVIFGNTQQEEIDYTEIFAPVAKMVT 229
            D    P  K+A+ S WVY++K+ SDGT+ER+KARLV+ GN Q+E ID+ E FAPVAKM T
Sbjct: 649  DVTDLPHGKKAISSKWVYKLKFNSDGTLERHKARLVVMGNHQKEGIDFKETFAPVAKMTT 708

Query: 230  VRTMLSVAATRNWEVHQMDVHNAFLHGDLTEEVYMKISPGFRASNPHKGCRLNK*LYGLR 409
            VR +L+VAA ++W+V QMDVHNAFLHGDL +E                       LYGL+
Sbjct: 709  VRLLLAVAAAKDWDVFQMDVHNAFLHGDLEQES----------------------LYGLK 746

Query: 410  QAPRCWFSKLTDSLRQCGFAQSYADYSLFTFRKNKXXXXXXXXXXXXXXSGNNAVCINKF 589
            QAPRCWF+KL+ +LR+ GF QSY DYSLF+  ++                GNN   I+ F
Sbjct: 747  QAPRCWFAKLSTALRKLGFTQSYEDYSLFSLNRDGTVIHFLVYVDDFIIVGNNLKAIDHF 806

Query: 590  ISYLGSYFHMKDLGPFNYFLRIEIARSQAGFYLSQYKYALEILSEVEMLGSKPVSTPMEL 769
              +L   FHMKDLG   YFL +E++R   GF LSQ KYAL+I++E  +LG KP + PMEL
Sbjct: 807  KEHLHKCFHMKDLGKLKYFLGLEVSRGADGFCLSQQKYALDIINEAGLLGYKPSAVPMEL 866

Query: 770  NHQLAKAAEELCDNPNRYCRLAGKLI*FSITHPDLAYPVHVLAQFM*YPCKEHWDA 937
            +H+L   +  + DNP +Y RL  + I  +IT PDL+Y VH+L+QFM  P + HW A
Sbjct: 867  HHKLGSISSPVFDNPAQYRRLVDRFIYLTITRPDLSYAVHILSQFMQTPLEAHWHA 922



 Score = 28.9 bits (63), Expect(2) = 2e-76
 Identities = 11/19 (57%), Positives = 17/19 (89%)
 Frame = +3

Query: 6   AMKQEIDALEKNNTWTMTN 62
           AM++EI+ALE N+TW +T+
Sbjct: 634 AMQKEIEALEANHTWDVTD 652