BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Catharanthus23_contig00026744
         (358 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_008081297.1| RNA polymerase alpha subunit (chloroplast) [...   172   4e-41
ref|YP_008578571.1| RNA polymerase alpha subunit (chloroplast) [...   164   9e-39
gb|AGW05005.1| RNA polymerase alpha subunit [Vincetoxicum rossicum]   164   9e-39
gb|AGW04928.1| RNA polymerase alpha subunit [Telosma cordata]         164   9e-39
gb|AGW04774.1| RNA polymerase alpha subunit [Orthosia scoparia]       164   9e-39
gb|AGW04697.1| RNA polymerase alpha subunit [Matelea biflora]         164   9e-39
gb|AGW04394.1| RNA polymerase alpha subunit [Araujia sericifera]      164   9e-39
gb|AGW04317.1| RNA polymerase alpha subunit [Secamone afzelii]        164   9e-39
gb|AER53175.1| RNA polymerase alpha subunit [Asclepias subaphylla]    164   9e-39
gb|AER52935.1| RNA polymerase alpha subunit [Asclepias macrotis]...   164   9e-39
gb|AER52690.1| RNA polymerase alpha subunit [Asclepias cutleri] ...   164   9e-39
gb|AER52608.1| RNA polymerase alpha subunit [Asclepias coulteri]      164   9e-39
gb|AER52444.1| RNA polymerase alpha subunit [Asclepias albicans]...   164   9e-39
ref|YP_008578654.1| RNA polymerase alpha subunit (chloroplast) [...   164   1e-38
gb|AGW04620.1| RNA polymerase alpha subunit [Marsdenia astephano...   162   4e-38
gb|ADD31219.1| RNA polymerase alpha subunit protein [Nerium olea...   162   4e-38
gb|AGW04471.1| RNA polymerase alpha subunit [Astephanus triflorus]    162   6e-38
gb|ADD31214.1| RNA polymerase alpha subunit protein [Ehretia acu...   160   2e-37
gb|AGW99001.1| RNA polymerase alpha subunit (chloroplast) [Turbi...   159   3e-37
gb|AGW98917.1| RNA polymerase alpha subunit (chloroplast) [Stict...   159   3e-37

>ref|YP_008081297.1| RNA polymerase alpha subunit (chloroplast) [Catharanthus roseus]
           gi|474452108|gb|AGI51176.1| RNA polymerase alpha subunit
           (chloroplast) [Catharanthus roseus]
          Length = 335

 Score =  172 bits (436), Expect = 4e-41
 Identities = 80/81 (98%), Positives = 81/81 (100%)
 Frame = -1

Query: 358 VFMPVRNANHSIHSYGNGNEKQEILFLEIWTNGSLTPNEALHEASRNLIDLFIPFLHMEE 179
           VFMPVRNANHSIHSYGNGNEKQEILFLEIWTNGSLTPNEALHEAS+NLIDLFIPFLHMEE
Sbjct: 175 VFMPVRNANHSIHSYGNGNEKQEILFLEIWTNGSLTPNEALHEASQNLIDLFIPFLHMEE 234

Query: 178 ENSHLENNQHPIPLSPFTFHE 116
           ENSHLENNQHPIPLSPFTFHE
Sbjct: 235 ENSHLENNQHPIPLSPFTFHE 255


>ref|YP_008578571.1| RNA polymerase alpha subunit (chloroplast) [Asclepias nivea]
           gi|544187128|gb|AGW05066.1| RNA polymerase alpha subunit
           (chloroplast) [Asclepias nivea]
          Length = 337

 Score =  164 bits (416), Expect = 9e-39
 Identities = 76/81 (93%), Positives = 78/81 (96%)
 Frame = -1

Query: 358 VFMPVRNANHSIHSYGNGNEKQEILFLEIWTNGSLTPNEALHEASRNLIDLFIPFLHMEE 179
           VFMPVRNANHSIHSYGNGNEKQEILFLEIWTNGSLTP EALHEASRNLIDLFIPFLHMEE
Sbjct: 175 VFMPVRNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHMEE 234

Query: 178 ENSHLENNQHPIPLSPFTFHE 116
           ENSHLENNQH +PL PFTFH+
Sbjct: 235 ENSHLENNQHAVPLFPFTFHD 255


>gb|AGW05005.1| RNA polymerase alpha subunit [Vincetoxicum rossicum]
          Length = 337

 Score =  164 bits (416), Expect = 9e-39
 Identities = 76/81 (93%), Positives = 78/81 (96%)
 Frame = -1

Query: 358 VFMPVRNANHSIHSYGNGNEKQEILFLEIWTNGSLTPNEALHEASRNLIDLFIPFLHMEE 179
           VFMPVRNANHSIHSYGNGNEKQEILFLEIWTNGSLTP EALHEASRNLIDLFIPFLHMEE
Sbjct: 175 VFMPVRNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHMEE 234

Query: 178 ENSHLENNQHPIPLSPFTFHE 116
           ENSHLENNQH +PL PFTFH+
Sbjct: 235 ENSHLENNQHAVPLFPFTFHD 255


>gb|AGW04928.1| RNA polymerase alpha subunit [Telosma cordata]
          Length = 340

 Score =  164 bits (416), Expect = 9e-39
 Identities = 76/81 (93%), Positives = 78/81 (96%)
 Frame = -1

Query: 358 VFMPVRNANHSIHSYGNGNEKQEILFLEIWTNGSLTPNEALHEASRNLIDLFIPFLHMEE 179
           VFMPVRNANHSIHSYGNGNEKQEILFLEIWTNGSLTP EALHEASRNLIDLFIPFLHMEE
Sbjct: 175 VFMPVRNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHMEE 234

Query: 178 ENSHLENNQHPIPLSPFTFHE 116
           ENSHLENNQH +PL PFTFH+
Sbjct: 235 ENSHLENNQHAVPLFPFTFHD 255


>gb|AGW04774.1| RNA polymerase alpha subunit [Orthosia scoparia]
          Length = 340

 Score =  164 bits (416), Expect = 9e-39
 Identities = 76/81 (93%), Positives = 78/81 (96%)
 Frame = -1

Query: 358 VFMPVRNANHSIHSYGNGNEKQEILFLEIWTNGSLTPNEALHEASRNLIDLFIPFLHMEE 179
           VFMPVRNANHSIHSYGNGNEKQEILFLEIWTNGSLTP EALHEASRNLIDLFIPFLHMEE
Sbjct: 175 VFMPVRNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHMEE 234

Query: 178 ENSHLENNQHPIPLSPFTFHE 116
           ENSHLENNQH +PL PFTFH+
Sbjct: 235 ENSHLENNQHAVPLFPFTFHD 255


>gb|AGW04697.1| RNA polymerase alpha subunit [Matelea biflora]
          Length = 335

 Score =  164 bits (416), Expect = 9e-39
 Identities = 76/81 (93%), Positives = 78/81 (96%)
 Frame = -1

Query: 358 VFMPVRNANHSIHSYGNGNEKQEILFLEIWTNGSLTPNEALHEASRNLIDLFIPFLHMEE 179
           VFMPVRNANHSIHSYGNGNEKQEILFLEIWTNGSLTP EALHEASRNLIDLFIPFLHMEE
Sbjct: 175 VFMPVRNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHMEE 234

Query: 178 ENSHLENNQHPIPLSPFTFHE 116
           ENSHLENNQH +PL PFTFH+
Sbjct: 235 ENSHLENNQHAVPLFPFTFHD 255


>gb|AGW04394.1| RNA polymerase alpha subunit [Araujia sericifera]
          Length = 340

 Score =  164 bits (416), Expect = 9e-39
 Identities = 76/81 (93%), Positives = 78/81 (96%)
 Frame = -1

Query: 358 VFMPVRNANHSIHSYGNGNEKQEILFLEIWTNGSLTPNEALHEASRNLIDLFIPFLHMEE 179
           VFMPVRNANHSIHSYGNGNEKQEILFLEIWTNGSLTP EALHEASRNLIDLFIPFLHMEE
Sbjct: 175 VFMPVRNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHMEE 234

Query: 178 ENSHLENNQHPIPLSPFTFHE 116
           ENSHLENNQH +PL PFTFH+
Sbjct: 235 ENSHLENNQHAVPLFPFTFHD 255


>gb|AGW04317.1| RNA polymerase alpha subunit [Secamone afzelii]
          Length = 337

 Score =  164 bits (416), Expect = 9e-39
 Identities = 76/81 (93%), Positives = 78/81 (96%)
 Frame = -1

Query: 358 VFMPVRNANHSIHSYGNGNEKQEILFLEIWTNGSLTPNEALHEASRNLIDLFIPFLHMEE 179
           VFMPVRNANHSIHSYGNGNEKQEILFLEIWTNGSLTP EALHEASRNLIDLFIPFLHMEE
Sbjct: 175 VFMPVRNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHMEE 234

Query: 178 ENSHLENNQHPIPLSPFTFHE 116
           ENSHLENNQH +PL PFTFH+
Sbjct: 235 ENSHLENNQHAVPLFPFTFHD 255


>gb|AER53175.1| RNA polymerase alpha subunit [Asclepias subaphylla]
          Length = 337

 Score =  164 bits (416), Expect = 9e-39
 Identities = 76/81 (93%), Positives = 78/81 (96%)
 Frame = -1

Query: 358 VFMPVRNANHSIHSYGNGNEKQEILFLEIWTNGSLTPNEALHEASRNLIDLFIPFLHMEE 179
           VFMPVRNANHSIHSYGNGNEKQEILFLEIWTNGSLTP EALHEASRNLIDLFIPFLHMEE
Sbjct: 175 VFMPVRNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHMEE 234

Query: 178 ENSHLENNQHPIPLSPFTFHE 116
           ENSHLENNQH +PL PFTFH+
Sbjct: 235 ENSHLENNQHAVPLFPFTFHD 255


>gb|AER52935.1| RNA polymerase alpha subunit [Asclepias macrotis]
           gi|355332333|gb|AER53015.1| RNA polymerase alpha subunit
           [Asclepias macrotis]
          Length = 337

 Score =  164 bits (416), Expect = 9e-39
 Identities = 76/81 (93%), Positives = 78/81 (96%)
 Frame = -1

Query: 358 VFMPVRNANHSIHSYGNGNEKQEILFLEIWTNGSLTPNEALHEASRNLIDLFIPFLHMEE 179
           VFMPVRNANHSIHSYGNGNEKQEILFLEIWTNGSLTP EALHEASRNLIDLFIPFLHMEE
Sbjct: 175 VFMPVRNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHMEE 234

Query: 178 ENSHLENNQHPIPLSPFTFHE 116
           ENSHLENNQH +PL PFTFH+
Sbjct: 235 ENSHLENNQHAVPLFPFTFHD 255


>gb|AER52690.1| RNA polymerase alpha subunit [Asclepias cutleri]
           gi|355332087|gb|AER52772.1| RNA polymerase alpha subunit
           [Asclepias cutleri]
          Length = 337

 Score =  164 bits (416), Expect = 9e-39
 Identities = 76/81 (93%), Positives = 78/81 (96%)
 Frame = -1

Query: 358 VFMPVRNANHSIHSYGNGNEKQEILFLEIWTNGSLTPNEALHEASRNLIDLFIPFLHMEE 179
           VFMPVRNANHSIHSYGNGNEKQEILFLEIWTNGSLTP EALHEASRNLIDLFIPFLHMEE
Sbjct: 175 VFMPVRNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHMEE 234

Query: 178 ENSHLENNQHPIPLSPFTFHE 116
           ENSHLENNQH +PL PFTFH+
Sbjct: 235 ENSHLENNQHAVPLFPFTFHD 255


>gb|AER52608.1| RNA polymerase alpha subunit [Asclepias coulteri]
          Length = 337

 Score =  164 bits (416), Expect = 9e-39
 Identities = 76/81 (93%), Positives = 78/81 (96%)
 Frame = -1

Query: 358 VFMPVRNANHSIHSYGNGNEKQEILFLEIWTNGSLTPNEALHEASRNLIDLFIPFLHMEE 179
           VFMPVRNANHSIHSYGNGNEKQEILFLEIWTNGSLTP EALHEASRNLIDLFIPFLHMEE
Sbjct: 175 VFMPVRNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHMEE 234

Query: 178 ENSHLENNQHPIPLSPFTFHE 116
           ENSHLENNQH +PL PFTFH+
Sbjct: 235 ENSHLENNQHAVPLFPFTFHD 255


>gb|AER52444.1| RNA polymerase alpha subunit [Asclepias albicans]
           gi|355331838|gb|AER52526.1| RNA polymerase alpha subunit
           [Asclepias albicans] gi|355332169|gb|AER52853.1| RNA
           polymerase alpha subunit [Asclepias leptopus]
           gi|355332412|gb|AER53093.1| RNA polymerase alpha subunit
           [Asclepias masonii] gi|355332576|gb|AER53255.1| RNA
           polymerase alpha subunit [Asclepias subaphylla]
           gi|355332657|gb|AER53335.1| RNA polymerase alpha subunit
           [Asclepias subulata] gi|355332740|gb|AER53417.1| RNA
           polymerase alpha subunit [Asclepias subulata]
           gi|355332823|gb|AER53499.1| RNA polymerase alpha subunit
           [Asclepias albicans x Asclepias subulata]
          Length = 337

 Score =  164 bits (416), Expect = 9e-39
 Identities = 76/81 (93%), Positives = 78/81 (96%)
 Frame = -1

Query: 358 VFMPVRNANHSIHSYGNGNEKQEILFLEIWTNGSLTPNEALHEASRNLIDLFIPFLHMEE 179
           VFMPVRNANHSIHSYGNGNEKQEILFLEIWTNGSLTP EALHEASRNLIDLFIPFLHMEE
Sbjct: 175 VFMPVRNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHMEE 234

Query: 178 ENSHLENNQHPIPLSPFTFHE 116
           ENSHLENNQH +PL PFTFH+
Sbjct: 235 ENSHLENNQHAVPLFPFTFHD 255


>ref|YP_008578654.1| RNA polymerase alpha subunit (chloroplast) [Asclepias syriaca]
           gi|326200311|gb|ADZ52350.1| RNA polymerase alpha subunit
           [Asclepias syriaca] gi|544187240|gb|AGW05168.1| RNA
           polymerase alpha subunit (chloroplast) [Asclepias
           syriaca]
          Length = 340

 Score =  164 bits (414), Expect = 1e-38
 Identities = 75/81 (92%), Positives = 78/81 (96%)
 Frame = -1

Query: 358 VFMPVRNANHSIHSYGNGNEKQEILFLEIWTNGSLTPNEALHEASRNLIDLFIPFLHMEE 179
           VFMPVRNANHS+HSYGNGNEKQEILFLEIWTNGSLTP EALHEASRNLIDLFIPFLHMEE
Sbjct: 175 VFMPVRNANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHMEE 234

Query: 178 ENSHLENNQHPIPLSPFTFHE 116
           ENSHLENNQH +PL PFTFH+
Sbjct: 235 ENSHLENNQHRVPLFPFTFHD 255


>gb|AGW04620.1| RNA polymerase alpha subunit [Marsdenia astephanoides]
          Length = 340

 Score =  162 bits (410), Expect = 4e-38
 Identities = 75/81 (92%), Positives = 78/81 (96%)
 Frame = -1

Query: 358 VFMPVRNANHSIHSYGNGNEKQEILFLEIWTNGSLTPNEALHEASRNLIDLFIPFLHMEE 179
           VFMPVRNAN+SIHSYGNGNEKQEILFLEIWTNGSLTP EALHEASRNLIDLFIPFLHMEE
Sbjct: 175 VFMPVRNANYSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHMEE 234

Query: 178 ENSHLENNQHPIPLSPFTFHE 116
           ENSHLENNQH +PL PFTFH+
Sbjct: 235 ENSHLENNQHAVPLFPFTFHD 255


>gb|ADD31219.1| RNA polymerase alpha subunit protein [Nerium oleander]
          Length = 337

 Score =  162 bits (410), Expect = 4e-38
 Identities = 75/81 (92%), Positives = 77/81 (95%)
 Frame = -1

Query: 358 VFMPVRNANHSIHSYGNGNEKQEILFLEIWTNGSLTPNEALHEASRNLIDLFIPFLHMEE 179
           VFMPVRNANHSIHSYGNGNEKQEILFLEIWTNGSLTP EALHEASRNLIDLFIPFLHMEE
Sbjct: 175 VFMPVRNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHMEE 234

Query: 178 ENSHLENNQHPIPLSPFTFHE 116
           ENSHLENNQH +PL PF FH+
Sbjct: 235 ENSHLENNQHAVPLFPFIFHD 255


>gb|AGW04471.1| RNA polymerase alpha subunit [Astephanus triflorus]
          Length = 340

 Score =  162 bits (409), Expect = 6e-38
 Identities = 74/81 (91%), Positives = 77/81 (95%)
 Frame = -1

Query: 358 VFMPVRNANHSIHSYGNGNEKQEILFLEIWTNGSLTPNEALHEASRNLIDLFIPFLHMEE 179
           VFMPVRNANHSIHSYGNGNEK+EILFLEIWTNGSLTP EALHEASRNLIDLFIPFLHMEE
Sbjct: 175 VFMPVRNANHSIHSYGNGNEKEEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHMEE 234

Query: 178 ENSHLENNQHPIPLSPFTFHE 116
           ENSHLENNQH +P  PFTFH+
Sbjct: 235 ENSHLENNQHAVPFFPFTFHD 255


>gb|ADD31214.1| RNA polymerase alpha subunit protein [Ehretia acuminata]
          Length = 339

 Score =  160 bits (405), Expect = 2e-37
 Identities = 74/81 (91%), Positives = 77/81 (95%)
 Frame = -1

Query: 358 VFMPVRNANHSIHSYGNGNEKQEILFLEIWTNGSLTPNEALHEASRNLIDLFIPFLHMEE 179
           VFMPVRNANHSIHSYGNGNEKQEILFLEIWTNGSLTP EALHEASRNLIDLFIPFLHMEE
Sbjct: 177 VFMPVRNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHMEE 236

Query: 178 ENSHLENNQHPIPLSPFTFHE 116
           EN HLE+NQH +PLSPF FH+
Sbjct: 237 ENVHLEDNQHTVPLSPFIFHD 257


>gb|AGW99001.1| RNA polymerase alpha subunit (chloroplast) [Turbina corymbosa]
          Length = 337

 Score =  159 bits (403), Expect = 3e-37
 Identities = 74/81 (91%), Positives = 77/81 (95%)
 Frame = -1

Query: 358 VFMPVRNANHSIHSYGNGNEKQEILFLEIWTNGSLTPNEALHEASRNLIDLFIPFLHMEE 179
           VFMPVRNANHSIHSYGNGNEKQEILFLEIWTNGSLTP EALHEASRNLIDLFIPFLHMEE
Sbjct: 175 VFMPVRNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHMEE 234

Query: 178 ENSHLENNQHPIPLSPFTFHE 116
           EN HLE+ +H IPLSPFTFH+
Sbjct: 235 ENLHLEDGEHTIPLSPFTFHD 255


>gb|AGW98917.1| RNA polymerase alpha subunit (chloroplast) [Stictocardia macalusoi]
          Length = 337

 Score =  159 bits (403), Expect = 3e-37
 Identities = 74/81 (91%), Positives = 77/81 (95%)
 Frame = -1

Query: 358 VFMPVRNANHSIHSYGNGNEKQEILFLEIWTNGSLTPNEALHEASRNLIDLFIPFLHMEE 179
           VFMPVRNANHSIHSYGNGNEKQEILFLEIWTNGSLTP EALHEASRNLIDLFIPFLHMEE
Sbjct: 175 VFMPVRNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHMEE 234

Query: 178 ENSHLENNQHPIPLSPFTFHE 116
           EN HLE+ +H IPLSPFTFH+
Sbjct: 235 ENLHLEDGEHTIPLSPFTFHD 255