BLASTX nr result
ID: Catharanthus23_contig00026710
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Catharanthus23_contig00026710
(493 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_006397405.1| hypothetical protein EUTSA_v10022479mg, part... 153 3e-35
ref|XP_006392410.1| hypothetical protein EUTSA_v10024012mg, part... 152 4e-35
ref|XP_006397357.1| hypothetical protein EUTSA_v10029482mg, part... 149 5e-34
ref|XP_006395894.1| hypothetical protein EUTSA_v10005360mg, part... 149 5e-34
ref|XP_006397381.1| hypothetical protein EUTSA_v10022495mg, part... 137 1e-30
gb|ADB85430.1| putative retrotransposon protein [Phyllostachys e... 137 2e-30
gb|ADB85411.1| putative retrotransposon protein [Phyllostachys e... 137 2e-30
gb|ADB85429.1| putative retrotransposon protein [Phyllostachys e... 136 3e-30
gb|ABF97393.1| retrotransposon protein, putative, Ty1-copia subc... 131 8e-29
gb|AAR06328.1| putative polyprotein [Oryza sativa Japonica Group] 131 8e-29
gb|ABF97047.1| retrotransposon protein, putative, Ty1-copia subc... 131 1e-28
gb|AAP44605.1| putative polyprotein [Oryza sativa Japonica Group] 131 1e-28
gb|AAK52165.1|AC084831_19 putative polyprotein [Oryza sativa Jap... 130 2e-28
gb|ABA99022.2| retrotransposon protein, putative, Ty1-copia subc... 130 2e-28
dbj|BAA22288.1| polyprotein [Oryza australiensis] 128 7e-28
gb|AAV85747.1| Integrase core domain, putative [Oryza sativa Jap... 125 4e-27
emb|CAD39797.2| OSJNBa0071G03.10 [Oryza sativa Japonica Group] 125 4e-27
gb|AAO73268.1| putative polyprotein [Oryza sativa Japonica Group] 125 6e-27
gb|AAX96621.1| retrotransposon protein, putative, Ty1-copia sub-... 123 2e-26
gb|ABF97213.1| retrotransposon protein, putative, Ty1-copia subc... 122 5e-26
>ref|XP_006397405.1| hypothetical protein EUTSA_v10022479mg, partial [Eutrema
salsugineum] gi|557098463|gb|ESQ38858.1| hypothetical
protein EUTSA_v10022479mg, partial [Eutrema salsugineum]
Length = 211
Score = 153 bits (386), Expect = 3e-35
Identities = 77/127 (60%), Positives = 94/127 (74%), Gaps = 1/127 (0%)
Frame = -1
Query: 490 SELQKQFEEVEA-YEMIKQLKEMF*EQARQERYLTTKVLNRCKMTPGTSISAHVLKMKGY 314
S+LQKQ+E VE+ +MI LK MF EQAR ERY T K L CK+ + +S HV+KM GY
Sbjct: 85 SDLQKQYENVESPIDMITSLKGMFQEQARTERYQTVKALIDCKLPKDSPVSPHVIKMIGY 144
Query: 313 FDQLEKLGAPVSHDLATDMILASLTSDYDQFVMNFNMHNMEKSINELHGMLKQAEQNIRK 134
D L KL P+S +LATD+IL SL S YDQFVMN+NMHN+ K++ ELHGML+ AE NI+K
Sbjct: 145 IDNLAKLDCPISQELATDLILHSLPSSYDQFVMNYNMHNLTKTLTELHGMLRSAEPNIKK 204
Query: 133 STPNVLM 113
TPNVLM
Sbjct: 205 GTPNVLM 211
>ref|XP_006392410.1| hypothetical protein EUTSA_v10024012mg, partial [Eutrema
salsugineum] gi|557088916|gb|ESQ29696.1| hypothetical
protein EUTSA_v10024012mg, partial [Eutrema salsugineum]
Length = 211
Score = 152 bits (384), Expect = 4e-35
Identities = 77/127 (60%), Positives = 94/127 (74%), Gaps = 1/127 (0%)
Frame = -1
Query: 490 SELQKQFEEVEA-YEMIKQLKEMF*EQARQERYLTTKVLNRCKMTPGTSISAHVLKMKGY 314
S+LQKQ+E VE+ +MI LK MF EQAR ERY T K L CK+ + +S HV+KM GY
Sbjct: 85 SDLQKQYENVESPIDMITILKGMFQEQARTERYQTVKALIDCKLPKDSPVSPHVIKMIGY 144
Query: 313 FDQLEKLGAPVSHDLATDMILASLTSDYDQFVMNFNMHNMEKSINELHGMLKQAEQNIRK 134
D L KL P+S +LATD+IL SL S YDQFVMN+NMHN+ K++ ELHGML+ AE NI+K
Sbjct: 145 IDNLAKLDCPISQELATDLILQSLPSSYDQFVMNYNMHNLTKTLTELHGMLRSAEPNIKK 204
Query: 133 STPNVLM 113
TPNVLM
Sbjct: 205 GTPNVLM 211
>ref|XP_006397357.1| hypothetical protein EUTSA_v10029482mg, partial [Eutrema
salsugineum] gi|557098374|gb|ESQ38810.1| hypothetical
protein EUTSA_v10029482mg, partial [Eutrema salsugineum]
Length = 229
Score = 149 bits (375), Expect = 5e-34
Identities = 76/128 (59%), Positives = 93/128 (72%), Gaps = 1/128 (0%)
Frame = -1
Query: 490 SELQKQFEEVEA-YEMIKQLKEMF*EQARQERYLTTKVLNRCKMTPGTSISAHVLKMKGY 314
S LQKQ+E VE+ +MI LK MF EQAR ERY T K L CK+ + +S HV+KM GY
Sbjct: 64 SNLQKQYENVESPIDMITSLKGMFQEQARTERYQTVKALIDCKLPKDSPVSPHVIKMIGY 123
Query: 313 FDQLEKLGAPVSHDLATDMILASLTSDYDQFVMNFNMHNMEKSINELHGMLKQAEQNIRK 134
D L KL +S +LATD+IL SL S YDQFVMN+NMHN+ K++ +LHGML+ AE NI+K
Sbjct: 124 IDNLAKLDCLISQELATDLILQSLPSSYDQFVMNYNMHNLTKTLTKLHGMLRSAEPNIKK 183
Query: 133 STPNVLMV 110
TPNVLMV
Sbjct: 184 GTPNVLMV 191
>ref|XP_006395894.1| hypothetical protein EUTSA_v10005360mg, partial [Eutrema
salsugineum] gi|557092533|gb|ESQ33180.1| hypothetical
protein EUTSA_v10005360mg, partial [Eutrema salsugineum]
Length = 214
Score = 149 bits (375), Expect = 5e-34
Identities = 75/128 (58%), Positives = 94/128 (73%), Gaps = 1/128 (0%)
Frame = -1
Query: 490 SELQKQFEEVEA-YEMIKQLKEMF*EQARQERYLTTKVLNRCKMTPGTSISAHVLKMKGY 314
S+LQKQ+E VE+ +MI LK MF EQA+ ERY T K L CK+ + +S HV+KM GY
Sbjct: 85 SDLQKQYENVESPIDMITSLKGMFQEQAQTERYQTVKALIDCKLPKDSPVSPHVIKMIGY 144
Query: 313 FDQLEKLGAPVSHDLATDMILASLTSDYDQFVMNFNMHNMEKSINELHGMLKQAEQNIRK 134
D L KL P+S +LATD+IL SL S Y+QFVMN+NMHN+ K++ ELHGML+ AE NI+K
Sbjct: 145 IDNLAKLDCPISQELATDLILQSLPSSYNQFVMNYNMHNLTKTLIELHGMLRSAEPNIKK 204
Query: 133 STPNVLMV 110
TPN LMV
Sbjct: 205 GTPNALMV 212
>ref|XP_006397381.1| hypothetical protein EUTSA_v10022495mg, partial [Eutrema
salsugineum] gi|557098425|gb|ESQ38834.1| hypothetical
protein EUTSA_v10022495mg, partial [Eutrema salsugineum]
Length = 175
Score = 137 bits (345), Expect = 1e-30
Identities = 71/127 (55%), Positives = 89/127 (70%), Gaps = 1/127 (0%)
Frame = -1
Query: 490 SELQKQFEEVEA-YEMIKQLKEMF*EQARQERYLTTKVLNRCKMTPGTSISAHVLKMKGY 314
S+LQKQ+E VE+ +MI LK MF EQ K L CK+ + +S HV+KMKGY
Sbjct: 55 SDLQKQYENVESPIDMITSLKGMFQEQGM------VKALIDCKLPTDSPVSPHVIKMKGY 108
Query: 313 FDQLEKLGAPVSHDLATDMILASLTSDYDQFVMNFNMHNMEKSINELHGMLKQAEQNIRK 134
D L KL P+S DLA D+IL SL+S YDQFVMN+NMHN+ K++ ELHGML+ AE NI+K
Sbjct: 109 IDNLAKLDCPISQDLAIDLILKSLSSSYDQFVMNYNMHNLTKTLTELHGMLRSAESNIKK 168
Query: 133 STPNVLM 113
TP+VLM
Sbjct: 169 GTPHVLM 175
>gb|ADB85430.1| putative retrotransposon protein [Phyllostachys edulis]
Length = 896
Score = 137 bits (344), Expect = 2e-30
Identities = 68/127 (53%), Positives = 92/127 (72%)
Frame = -1
Query: 490 SELQKQFEEVEAYEMIKQLKEMF*EQARQERYLTTKVLNRCKMTPGTSISAHVLKMKGYF 311
S+LQKQFE +EAY+MI LK MF QAR ER+ +K L CK+ G +S HV+KM GY
Sbjct: 89 SDLQKQFENIEAYDMIVALKGMFETQARTERFEISKNLFGCKLAEGGPVSPHVIKMVGYT 148
Query: 310 DQLEKLGAPVSHDLATDMILASLTSDYDQFVMNFNMHNMEKSINELHGMLKQAEQNIRKS 131
LEKLG P+S +LATD+ILASL Y QF++NF+M+ ++K++ ELH MLK AE +++K
Sbjct: 149 QSLEKLGFPLSQELATDLILASLPESYGQFILNFHMNGLDKNLTELHMMLKTAEGSVKKC 208
Query: 130 TPNVLMV 110
+V+MV
Sbjct: 209 NNHVIMV 215
>gb|ADB85411.1| putative retrotransposon protein [Phyllostachys edulis]
Length = 566
Score = 137 bits (344), Expect = 2e-30
Identities = 65/126 (51%), Positives = 97/126 (76%)
Frame = -1
Query: 487 ELQKQFEEVEAYEMIKQLKEMF*EQARQERYLTTKVLNRCKMTPGTSISAHVLKMKGYFD 308
ELQKQ+E +AY MI LK MF +QAR ER+ T+K L C+++ G +S HV+KM G+ +
Sbjct: 4 ELQKQYETTDAYNMIMGLKGMFQDQARAERFNTSKALFSCRLSEGNPVSPHVIKMIGHIE 63
Query: 307 QLEKLGAPVSHDLATDMILASLTSDYDQFVMNFNMHNMEKSINELHGMLKQAEQNIRKST 128
LEKLG P+S +LATD+IL SL++ ++ ++NF+M+ MEKS+ ELHGMLK AE++I+KS+
Sbjct: 64 SLEKLGFPLSQELATDVILQSLSASFEPVILNFHMNGMEKSMTELHGMLKCAEESIKKSS 123
Query: 127 PNVLMV 110
++++V
Sbjct: 124 NHLMIV 129
>gb|ADB85429.1| putative retrotransposon protein [Phyllostachys edulis]
Length = 1313
Score = 136 bits (342), Expect = 3e-30
Identities = 66/127 (51%), Positives = 94/127 (74%)
Frame = -1
Query: 490 SELQKQFEEVEAYEMIKQLKEMF*EQARQERYLTTKVLNRCKMTPGTSISAHVLKMKGYF 311
S+LQKQFE +EAY+MI LK MF QAR +R+ +K L CK+ G+ +S H++KM GY
Sbjct: 172 SDLQKQFENIEAYDMIVALKGMFETQARTKRFEISKNLFSCKLAEGSPVSPHMIKMVGYT 231
Query: 310 DQLEKLGAPVSHDLATDMILASLTSDYDQFVMNFNMHNMEKSINELHGMLKQAEQNIRKS 131
LEKLG P+S +LATD+ILASL + Y QF++NF+M+ ++K++ ELH +LK AE +I+K
Sbjct: 232 QSLEKLGFPLSQELATDLILASLPASYGQFILNFHMNGLDKNLTELHMLLKTAEDSIKKI 291
Query: 130 TPNVLMV 110
+V+MV
Sbjct: 292 NSHVMMV 298
>gb|ABF97393.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1073
Score = 131 bits (330), Expect = 8e-29
Identities = 60/126 (47%), Positives = 96/126 (76%)
Frame = -1
Query: 487 ELQKQFEEVEAYEMIKQLKEMF*EQARQERYLTTKVLNRCKMTPGTSISAHVLKMKGYFD 308
ELQ+Q+E ++A+ +I L+ MF +QAR ER+ T+K L C++ G +S HV+KM GY +
Sbjct: 178 ELQRQYEALDAHTIITGLRNMFEDQARAERFNTSKSLFACRLAEGNPVSPHVIKMIGYTE 237
Query: 307 QLEKLGAPVSHDLATDMILASLTSDYDQFVMNFNMHNMEKSINELHGMLKQAEQNIRKST 128
L+KLG P+S +LATD+IL SL ++ F+MNFNM+N+ +++ ELHGMLK AE++I+K++
Sbjct: 238 SLDKLGFPLSRELATDLILQSLPPSFEPFIMNFNMNNLNRTLAELHGMLKTAEESIKKNS 297
Query: 127 PNVLMV 110
+V+++
Sbjct: 298 NHVMVM 303
>gb|AAR06328.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1063
Score = 131 bits (330), Expect = 8e-29
Identities = 60/126 (47%), Positives = 96/126 (76%)
Frame = -1
Query: 487 ELQKQFEEVEAYEMIKQLKEMF*EQARQERYLTTKVLNRCKMTPGTSISAHVLKMKGYFD 308
ELQ+Q+E ++A+ +I L+ MF +QAR ER+ T+K L C++ G +S HV+KM GY +
Sbjct: 178 ELQRQYEALDAHTIITGLRNMFEDQARAERFNTSKSLFACRLAEGNPVSPHVIKMIGYTE 237
Query: 307 QLEKLGAPVSHDLATDMILASLTSDYDQFVMNFNMHNMEKSINELHGMLKQAEQNIRKST 128
L+KLG P+S +LATD+IL SL ++ F+MNFNM+N+ +++ ELHGMLK AE++I+K++
Sbjct: 238 SLDKLGFPLSRELATDLILQSLPPSFEPFIMNFNMNNLNRTLAELHGMLKTAEESIKKNS 297
Query: 127 PNVLMV 110
+V+++
Sbjct: 298 NHVMVM 303
>gb|ABF97047.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1248
Score = 131 bits (329), Expect = 1e-28
Identities = 60/126 (47%), Positives = 96/126 (76%)
Frame = -1
Query: 487 ELQKQFEEVEAYEMIKQLKEMF*EQARQERYLTTKVLNRCKMTPGTSISAHVLKMKGYFD 308
ELQ+Q+E ++A+ +I L+ MF +QAR ER+ T+K L C++ G +S HV+KM GY +
Sbjct: 153 ELQRQYEALDAHTIITGLRNMFEDQARAERFNTSKSLFACRLAEGNLVSPHVIKMIGYTE 212
Query: 307 QLEKLGAPVSHDLATDMILASLTSDYDQFVMNFNMHNMEKSINELHGMLKQAEQNIRKST 128
L+KLG P+S +LATD+IL SL ++ F+MNFNM+N+ +++ ELHGMLK AE++I+K++
Sbjct: 213 SLDKLGFPLSRELATDLILQSLPPSFEPFIMNFNMNNLNRTLAELHGMLKTAEESIKKNS 272
Query: 127 PNVLMV 110
+V+++
Sbjct: 273 NHVMVM 278
>gb|AAP44605.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1161
Score = 131 bits (329), Expect = 1e-28
Identities = 60/126 (47%), Positives = 96/126 (76%)
Frame = -1
Query: 487 ELQKQFEEVEAYEMIKQLKEMF*EQARQERYLTTKVLNRCKMTPGTSISAHVLKMKGYFD 308
ELQ+Q+E ++A+ +I L+ MF +QAR ER+ T+K L C++ G +S HV+KM GY +
Sbjct: 86 ELQRQYEALDAHTIITGLRNMFEDQARAERFNTSKSLFACRLAEGNLVSPHVIKMIGYTE 145
Query: 307 QLEKLGAPVSHDLATDMILASLTSDYDQFVMNFNMHNMEKSINELHGMLKQAEQNIRKST 128
L+KLG P+S +LATD+IL SL ++ F+MNFNM+N+ +++ ELHGMLK AE++I+K++
Sbjct: 146 SLDKLGFPLSRELATDLILQSLPPSFEPFIMNFNMNNLNRTLAELHGMLKTAEESIKKNS 205
Query: 127 PNVLMV 110
+V+++
Sbjct: 206 NHVMVM 211
>gb|AAK52165.1|AC084831_19 putative polyprotein [Oryza sativa Japonica Group]
gi|108709282|gb|ABF97077.1| retrotransposon protein,
putative, Ty1-copia subclass [Oryza sativa Japonica
Group]
Length = 262
Score = 130 bits (327), Expect = 2e-28
Identities = 60/126 (47%), Positives = 93/126 (73%)
Frame = -1
Query: 487 ELQKQFEEVEAYEMIKQLKEMF*EQARQERYLTTKVLNRCKMTPGTSISAHVLKMKGYFD 308
E Q+Q+E ++A+ +I L+ MF +QAR ER+ T K L C++ G +S HV+KM GY +
Sbjct: 86 EFQRQYEALDAHTIITGLRNMFEDQARAERFNTLKSLFACRLAEGNPVSLHVIKMIGYTE 145
Query: 307 QLEKLGAPVSHDLATDMILASLTSDYDQFVMNFNMHNMEKSINELHGMLKQAEQNIRKST 128
L+KLG P+S +LATD+IL SL ++ F+MNFNM+N+ S+ ELHGMLK AE++I+K++
Sbjct: 146 SLDKLGCPLSRELATDLILQSLPPSFEPFIMNFNMNNLNSSLAELHGMLKTAEESIKKNS 205
Query: 127 PNVLMV 110
+V+++
Sbjct: 206 NHVMVM 211
>gb|ABA99022.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 829
Score = 130 bits (326), Expect = 2e-28
Identities = 59/126 (46%), Positives = 96/126 (76%)
Frame = -1
Query: 487 ELQKQFEEVEAYEMIKQLKEMF*EQARQERYLTTKVLNRCKMTPGTSISAHVLKMKGYFD 308
ELQ+Q+E ++A+ +I L+ MF +QAR ER+ T+K L C++ G +S HV+K+ GY +
Sbjct: 165 ELQRQYEALDAHTIITGLRNMFEDQARAERFNTSKSLFACRLAEGNPVSPHVIKIIGYTE 224
Query: 307 QLEKLGAPVSHDLATDMILASLTSDYDQFVMNFNMHNMEKSINELHGMLKQAEQNIRKST 128
L+KLG P+S +LATD+IL SL ++ F+MNFNM+N+ +++ ELHGMLK AE++I+K++
Sbjct: 225 SLDKLGFPLSRELATDLILQSLPPSFEPFIMNFNMNNLNRTLAELHGMLKTAEESIKKNS 284
Query: 127 PNVLMV 110
+V+++
Sbjct: 285 NHVMVM 290
>dbj|BAA22288.1| polyprotein [Oryza australiensis]
Length = 1317
Score = 128 bits (322), Expect = 7e-28
Identities = 60/126 (47%), Positives = 93/126 (73%)
Frame = -1
Query: 487 ELQKQFEEVEAYEMIKQLKEMF*EQARQERYLTTKVLNRCKMTPGTSISAHVLKMKGYFD 308
ELQKQ+E +A+ I+ L+ MF QAR ER+ T+K L C++ G +S HV+KM GY +
Sbjct: 87 ELQKQYESSDAHTTIQGLRGMFENQARDERFNTSKSLFACRLVEGNPVSPHVIKMIGYIE 146
Query: 307 QLEKLGAPVSHDLATDMILASLTSDYDQFVMNFNMHNMEKSINELHGMLKQAEQNIRKST 128
LEKLG P+S +LATD+IL SL ++ F++N++M+NM++++ ELHGMLK E++I+K+
Sbjct: 147 SLEKLGFPLSQELATDVILQSLPPSFEPFILNYHMNNMDRTLAELHGMLKTVEESIQKNG 206
Query: 127 PNVLMV 110
+V+M+
Sbjct: 207 HHVMMM 212
>gb|AAV85747.1| Integrase core domain, putative [Oryza sativa Japonica Group]
gi|62701883|gb|AAX92956.1| retrotransposon protein,
putative, Ty1-copia sub-class [Oryza sativa Japonica
Group] gi|108864259|gb|ABA92827.2| retrotransposon
protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1184
Score = 125 bits (315), Expect = 4e-27
Identities = 58/126 (46%), Positives = 95/126 (75%)
Frame = -1
Query: 487 ELQKQFEEVEAYEMIKQLKEMF*EQARQERYLTTKVLNRCKMTPGTSISAHVLKMKGYFD 308
ELQ+Q+E ++A+ +I L+ MF +QAR +R+ T+K L C++ G +S HV+KM GY +
Sbjct: 86 ELQRQYEALDAHTIITGLRNMFEDQARAKRFNTSKSLFACRLAEGNPVSPHVIKMIGYNE 145
Query: 307 QLEKLGAPVSHDLATDMILASLTSDYDQFVMNFNMHNMEKSINELHGMLKQAEQNIRKST 128
LEKLG P+S +LATD+IL SL ++ F++NFNM+NM +++ +L GMLK AE++I+K++
Sbjct: 146 TLEKLGFPLSQELATDLILQSLPPSFEPFILNFNMNNMNRTLTKLPGMLKTAEESIKKNS 205
Query: 127 PNVLMV 110
+V+++
Sbjct: 206 NHVMVM 211
>emb|CAD39797.2| OSJNBa0071G03.10 [Oryza sativa Japonica Group]
Length = 948
Score = 125 bits (315), Expect = 4e-27
Identities = 59/126 (46%), Positives = 93/126 (73%)
Frame = -1
Query: 487 ELQKQFEEVEAYEMIKQLKEMF*EQARQERYLTTKVLNRCKMTPGTSISAHVLKMKGYFD 308
ELQ Q+E ++A+ +I L+ MF +QAR ER+ T+K L ++ G +S HV+KM GY +
Sbjct: 163 ELQSQYEALDAHTIITGLRNMFEDQARAERFNTSKFLFAYRLAQGNPVSPHVIKMIGYTE 222
Query: 307 QLEKLGAPVSHDLATDMILASLTSDYDQFVMNFNMHNMEKSINELHGMLKQAEQNIRKST 128
L+KLG P+S +LATD+IL SL ++ F+MNFNM+N+ +++ ELHGMLK AE++I+K++
Sbjct: 223 SLDKLGFPLSRELATDLILQSLPPSFEPFIMNFNMNNLNRTLAELHGMLKTAEESIKKNS 282
Query: 127 PNVLMV 110
V+++
Sbjct: 283 NYVMVM 288
>gb|AAO73268.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 478
Score = 125 bits (314), Expect = 6e-27
Identities = 58/126 (46%), Positives = 93/126 (73%)
Frame = -1
Query: 487 ELQKQFEEVEAYEMIKQLKEMF*EQARQERYLTTKVLNRCKMTPGTSISAHVLKMKGYFD 308
ELQ+Q+E + + +I L+ MF +QAR ER+ T+K L C++ G +S HV+KM GY +
Sbjct: 86 ELQRQYEALNDHTIITGLRNMFEDQARAERFNTSKFLFACRLAEGNPVSLHVIKMIGYTE 145
Query: 307 QLEKLGAPVSHDLATDMILASLTSDYDQFVMNFNMHNMEKSINELHGMLKQAEQNIRKST 128
L+KLG P+S +LATD+IL SL ++ F+MNFN++N+ + + ELHGMLK AE++I+K++
Sbjct: 146 SLDKLGFPLSRELATDLILQSLPPRFEPFIMNFNINNLNRILAELHGMLKTAEESIKKNS 205
Query: 127 PNVLMV 110
+V+++
Sbjct: 206 NHVMVM 211
>gb|AAX96621.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
sativa Japonica Group] gi|77550176|gb|ABA92973.1|
retrotransposon protein, putative, Ty1-copia subclass
[Oryza sativa Japonica Group]
Length = 591
Score = 123 bits (309), Expect = 2e-26
Identities = 57/124 (45%), Positives = 92/124 (74%)
Frame = -1
Query: 487 ELQKQFEEVEAYEMIKQLKEMF*EQARQERYLTTKVLNRCKMTPGTSISAHVLKMKGYFD 308
+LQ+Q+E ++A+ +I L+ MF +QAR ER+ T+K L C++ G +S HV+KM GY +
Sbjct: 108 KLQRQYEALDAHTIITGLRNMFEDQARAERFNTSKSLFACRLAEGNPVSPHVIKMIGYTE 167
Query: 307 QLEKLGAPVSHDLATDMILASLTSDYDQFVMNFNMHNMEKSINELHGMLKQAEQNIRKST 128
L+KLG P+S +LATD+IL SL ++ F+MNFNM+N+ +++ ELH LK AE++I+K++
Sbjct: 168 SLDKLGFPLSRELATDLILQSLPPSFEPFIMNFNMNNLNRTLAELHVTLKTAEESIKKNS 227
Query: 127 PNVL 116
+V+
Sbjct: 228 NHVM 231
>gb|ABF97213.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1142
Score = 122 bits (306), Expect = 5e-26
Identities = 56/126 (44%), Positives = 93/126 (73%)
Frame = -1
Query: 487 ELQKQFEEVEAYEMIKQLKEMF*EQARQERYLTTKVLNRCKMTPGTSISAHVLKMKGYFD 308
+LQ+Q+E ++A+ +I L+ M +QAR ER T+K L C++ G +S HV+KM GY +
Sbjct: 138 KLQRQYEALDAHTIITGLRNMSEDQARAERSNTSKSLFACRLAEGNPVSPHVIKMIGYTE 197
Query: 307 QLEKLGAPVSHDLATDMILASLTSDYDQFVMNFNMHNMEKSINELHGMLKQAEQNIRKST 128
L+KLG P++ +L TD+IL SL ++ F+MNFNM+N+ +++ ELHGMLK AE++I+K++
Sbjct: 198 SLDKLGFPLNRELVTDLILQSLPPSFEPFIMNFNMNNLNRTLAELHGMLKTAEESIKKNS 257
Query: 127 PNVLMV 110
+V+++
Sbjct: 258 NHVMVM 263