BLASTX nr result
ID: Catharanthus23_contig00026249
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Catharanthus23_contig00026249
(543 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAC63844.1| putative non-LTR retroelement reverse transcripta... 95 9e-18
emb|CCA66009.1| hypothetical protein [Beta vulgaris subsp. vulga... 91 2e-16
gb|AAC26674.1| putative non-LTR retroelement reverse transcripta... 90 3e-16
ref|XP_006490008.1| PREDICTED: uncharacterized protein LOC102624... 89 5e-16
gb|EMJ11928.1| hypothetical protein PRUPE_ppa021798mg [Prunus pe... 89 9e-16
emb|CAB10337.1| reverse transcriptase like protein [Arabidopsis ... 86 4e-15
gb|ABD28627.2| RNA-directed DNA polymerase (Reverse transcriptas... 85 1e-14
emb|CCA65997.1| hypothetical protein [Beta vulgaris subsp. vulga... 81 2e-13
gb|EOY02376.1| LINE-type retrotransposon LIb DNA, Insertion at t... 80 4e-13
gb|EMJ15594.1| hypothetical protein PRUPE_ppa026776mg, partial [... 77 2e-12
gb|AAD37021.1| putative non-LTR retrolelement reverse transcript... 75 5e-12
gb|ABO80459.1| RNA-directed DNA polymerase (Reverse transcriptas... 75 1e-11
gb|EMJ08808.1| hypothetical protein PRUPE_ppa018907mg, partial [... 73 4e-11
ref|NP_001174443.1| Os05g0434000 [Oryza sativa Japonica Group] g... 73 5e-11
gb|AAT58873.1| hypothetical protein [Oryza sativa Japonica Group] 73 5e-11
gb|AAB48350.1| reverse transcriptase, partial [Arabidopsis thali... 68 9e-11
pir||S65815 RNA-directed DNA polymerase (EC 2.7.7.49) (clone NIN... 68 9e-11
gb|AEL30359.1| RNA-directed DNA polymerase [Arachis hypogaea] 71 1e-10
ref|XP_002535257.1| conserved hypothetical protein [Ricinus comm... 70 3e-10
emb|CCA65995.1| hypothetical protein [Beta vulgaris subsp. vulga... 69 7e-10
>gb|AAC63844.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1231
Score = 95.1 bits (235), Expect = 9e-18
Identities = 59/147 (40%), Positives = 91/147 (61%), Gaps = 5/147 (3%)
Frame = +3
Query: 117 KSFRPMALCNVLVKGITKIIASKLKPLIGKLTGQQQTSF-TG*SRVVNMIIVQELIRNMK 293
+ FRP++LCNVL K ITK++ ++LK +I KL G Q SF G + N+++VQE + +M+
Sbjct: 366 QQFRPVSLCNVLFKIITKMMVTRLKNVISKLIGPAQASFIPGRLSIDNIVLVQEAVHSMR 425
Query: 294 RKIGKKGCMAIIVNLEKAYDRVNRVL*HGS*DCAR*SD-*NNYVLCSVS*VFDHLEW--- 461
RK G+KG M + ++LEKAYDRV + + A S+ + ++ V+ + W
Sbjct: 426 RKKGRKGWMLLKLDLEKAYDRVRWDFLQETLEAAGLSEGWTSRIMAGVTDPSMSVLWNGE 485
Query: 462 RLEHFETSRGV**DDPL*PYIFVLCME 542
R + F +RG+ DPL PY+FVLC+E
Sbjct: 486 RTDSFVPARGLRQGDPLSPYLFVLCLE 512
>emb|CCA66009.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1378
Score = 90.5 bits (223), Expect = 2e-16
Identities = 61/175 (34%), Positives = 94/175 (53%), Gaps = 5/175 (2%)
Frame = +3
Query: 33 VSDGGNFPVGMNEFSDFFDS*TRMSGDSKSFRPMALCNVLVKGITKIIASKLKPLIGKLT 212
+ G +FP G N+ + +K FRP+ LCN++ K +TK+I ++LKP++ L
Sbjct: 481 ILSGRDFPEGFNDTFIVLIPKMDIPQLAKHFRPIGLCNIVYKIVTKVIINRLKPILPSLI 540
Query: 213 GQQQTSFTG*SRVV-NMIIVQELIRNMKRKIGKKGCMAIIVNLEKAYDRVNRVL*HGS-* 386
Q SF ++ N+IIVQE+ +M+ K GKKG MA+ ++ EKAYDR+ S
Sbjct: 541 SPTQCSFVPNRQITDNVIIVQEMFHSMRNKQGKKGFMAVKIDFEKAYDRLRWTFIRESLM 600
Query: 387 DCAR*SD*NNYVLCSVS*VFDHLEWRLEHFE---TSRGV**DDPL*PYIFVLCME 542
+ + V+ VS + W E E +RG+ DPL PY++V+CME
Sbjct: 601 ELRIPQHLVDIVMNCVSSANLQILWNGEPMEKICPTRGLRQGDPLSPYLYVICME 655
>gb|AAC26674.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 970
Score = 90.1 bits (222), Expect = 3e-16
Identities = 57/145 (39%), Positives = 88/145 (60%), Gaps = 5/145 (3%)
Frame = +3
Query: 123 FRPMALCNVLVKGITKIIASKLKPLIGKLTGQQQTSF-TG*SRVVNMIIVQELIRNMKRK 299
FRPM+LCNVL K ITK+I ++LK +I KL G Q +F G + N+++VQE + +M+RK
Sbjct: 218 FRPMSLCNVLFKIITKMIVNRLKKVILKLIGPAQANFIPGRLSIDNIVLVQEAVHSMRRK 277
Query: 300 IGKKGCMAIIVNLEKAYDRVNRVL*HGS*DCAR*SD-*NNYVLCSVS*VFDHLEW---RL 467
G+KG M + ++LEKAYDR+ + S+ + ++ V+ + W +
Sbjct: 278 KGRKGWMLLKLDLEKAYDRIRWNFLQETLVATGLSEVWTHRIMAGVTDPSMSVLWNGGKT 337
Query: 468 EHFETSRGV**DDPL*PYIFVLCME 542
+ F +RG+ DPL PY+FVLC+E
Sbjct: 338 DSFVPARGLRQGDPLSPYLFVLCLE 362
>ref|XP_006490008.1| PREDICTED: uncharacterized protein LOC102624085 [Citrus sinensis]
Length = 1635
Score = 89.4 bits (220), Expect = 5e-16
Identities = 60/145 (41%), Positives = 88/145 (60%), Gaps = 5/145 (3%)
Frame = +3
Query: 123 FRPMALCNVLVKGITKIIASKLKPLIGKLTGQQQTSFT-G*SRVVNMIIVQELIRNMKRK 299
+RP++LC V+ K ITKIIA++L+ L+ +L G QTSF G N+I+ QE+I +M+RK
Sbjct: 1001 YRPISLCTVMYKTITKIIANRLQELLPELIGPHQTSFVPGRHITENIIVAQEIIHSMRRK 1060
Query: 300 IGKKGCMAIIVNLEKAYDRVN-RVL*HGS*DCAR*SD*NNYVLCSVS*VFDHLEWRLE-- 470
G+KG MAI V+L KAYDR++ + + + N ++ ++ ++ W E
Sbjct: 1061 KGRKGFMAIKVDLGKAYDRLSWTFIQETLQELNLPTMLINLIMECITTATMNVLWNGELS 1120
Query: 471 -HFETSRGV**DDPL*PYIFVLCME 542
F RGV DPL PYIFVLC+E
Sbjct: 1121 SEFCPGRGVRQGDPLSPYIFVLCIE 1145
>gb|EMJ11928.1| hypothetical protein PRUPE_ppa021798mg [Prunus persica]
Length = 1171
Score = 88.6 bits (218), Expect = 9e-16
Identities = 59/141 (41%), Positives = 83/141 (58%), Gaps = 1/141 (0%)
Frame = +3
Query: 123 FRPMALCNVLVKGITKIIASKLKPLIGKLTGQQQTSFT-G*SRVVNMIIVQELIRNMKRK 299
FRP++ CNV K ITKII S+L+P++ K + Q +F G S N++I EL + K K
Sbjct: 526 FRPISFCNVSYKIITKIIVSRLRPILAKSISKNQGAFAPGRSIFDNILITHELFHDFKHK 585
Query: 300 IGKKGCMAIIVNLEKAYDRVNRVL*HGS*DCAR*SD*NNYVLCSVS*VFDHLEWRLEHFE 479
G +G MAI ++LEKAYD ++ G + S N+Y S S + + + HF+
Sbjct: 586 NGSRGAMAIKIDLEKAYDLLDWKYIRGCLNQFGFS--NDYT--SFSMLINGSPY--GHFK 639
Query: 480 TSRGV**DDPL*PYIFVLCME 542
SRG+ DPL PYIF+LCME
Sbjct: 640 ASRGIRQGDPLSPYIFILCME 660
>emb|CAB10337.1| reverse transcriptase like protein [Arabidopsis thaliana]
gi|7268307|emb|CAB78601.1| reverse transcriptase like
protein [Arabidopsis thaliana]
Length = 929
Score = 86.3 bits (212), Expect = 4e-15
Identities = 57/145 (39%), Positives = 86/145 (59%), Gaps = 5/145 (3%)
Frame = +3
Query: 123 FRPMALCNVLVKGITKIIASKLKPLIGKLTGQQQTSFT-G*SRVVNMIIVQELIRNMKRK 299
FRP++LCNVL K ITK++ +LK +I KL G Q SF G N+++VQE + +M+RK
Sbjct: 320 FRPVSLCNVLFKIITKMMVIRLKNVISKLIGPAQASFIPGRLSFDNIVVVQEAVHSMRRK 379
Query: 300 IGKKGCMAIIVNLEKAYDRVNRVL*HGS*DCAR*SD-*NNYVLCSVS*VFDHLEW---RL 467
G+KG M + ++LEKAYDR+ + + A S+ ++ V+ L W +
Sbjct: 380 KGRKGWMLLKLDLEKAYDRIRWDFLAETLEAAGLSEGWIKRIMECVAGPEMSLLWNGEKT 439
Query: 468 EHFETSRGV**DDPL*PYIFVLCME 542
+ F RG+ DP+ PY+FVLC+E
Sbjct: 440 DSFTPERGLRQGDPISPYLFVLCIE 464
>gb|ABD28627.2| RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H
[Medicago truncatula]
Length = 1296
Score = 84.7 bits (208), Expect = 1e-14
Identities = 58/152 (38%), Positives = 83/152 (54%), Gaps = 10/152 (6%)
Frame = +3
Query: 117 KSFRPMALCNVLVKGITKIIASKLKPLIGKLTGQQQTSFT-G*SRVVNMIIVQELIRNMK 293
K FRP++LCN L K ITK++ +L+P + L G Q+SF G N II+QE++ MK
Sbjct: 505 KDFRPISLCNTLYKIITKVLVHRLRPFLNNLIGPYQSSFLPGRGTADNSIILQEILHFMK 564
Query: 294 RKIGKKGCMAIIVNLEKAYDRVNR------VL*HGS*DCAR*SD*NNYVLCSVS*VFDHL 455
R KKG +A ++LEKA+D VN +L G D ++ VS L
Sbjct: 565 RSKRKKGYVAFKLDLEKAFDNVNWDFLNSCLLDFGFPDIIV-----KLIMHCVSSANYSL 619
Query: 456 EW---RLEHFETSRGV**DDPL*PYIFVLCME 542
W ++ F+ + G+ DPL PY+F+LCME
Sbjct: 620 LWNGNKMPPFKPTHGLRQGDPLSPYLFILCME 651
>emb|CCA65997.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1363
Score = 80.9 bits (198), Expect = 2e-13
Identities = 57/157 (36%), Positives = 82/157 (52%), Gaps = 15/157 (9%)
Frame = +3
Query: 117 KSFRPMALCNVLVKGITKIIASKLKPLIGKLTGQQQTSFT-G*SRVVNMIIVQELIRNMK 293
K FRP+ LCN + K ITK+IA+++KP++G+L QTSF G + N+II +E+ K
Sbjct: 507 KDFRPIGLCNTVYKMITKVIANRIKPILGELIHPSQTSFVPGRNIQENIIIAKEMAFLFK 566
Query: 294 RKIGKKGCMAIIVNLEKAYDRVN----RVL*HGS*DCAR*SD*NNYVLCSVS*VFD---- 449
+ K+ MA+ ++L KAYD + R G N+ ++ + D
Sbjct: 567 KSNPKRNIMALKIDLSKAYDSLEWGFIRETLQGF----------NFPQSLIALIMDCISS 616
Query: 450 ---HLEWR---LEHFETSRGV**DDPL*PYIFVLCME 542
L W + F SRG+ DPL PYIFVLCME
Sbjct: 617 PAISLIWNGEVTQSFSPSRGIRQGDPLSPYIFVLCME 653
>gb|EOY02376.1| LINE-type retrotransposon LIb DNA, Insertion at the S11 site-like
protein [Theobroma cacao]
Length = 620
Score = 79.7 bits (195), Expect = 4e-13
Identities = 52/148 (35%), Positives = 85/148 (57%), Gaps = 5/148 (3%)
Frame = +3
Query: 114 SKSFRPMALCNVLVKGITKIIASKLKPLIGKLTGQQQTSFTG*SRVV-NMIIVQELIRNM 290
S RP++L V+ K + K++A++LKP + L + Q SF + +V N+I+VQE++ +
Sbjct: 79 SSQCRPISLLPVIFKVLVKVVANRLKPFMNLLIEETQASFILETHIVDNIIVVQEVVHSF 138
Query: 291 KRKIGKKGCMAIIVNLEKAYDRVNRVL*HGS-*DCAR*SD*NNYVLCSVS*VFDHLEWR- 464
K G++G M + ++LEKAYDR+ + S + + + ++ S + H+ W
Sbjct: 139 HEKQGRRGWMMVKIDLEKAYDRLRWEFIYDSLVEAQIPENIIDILIRSWNAHSSHILWNG 198
Query: 465 --LEHFETSRGV**DDPL*PYIFVLCME 542
E F SRGV DPL PY+FVLC+E
Sbjct: 199 TCFEKFFPSRGVRLGDPLAPYLFVLCIE 226
>gb|EMJ15594.1| hypothetical protein PRUPE_ppa026776mg, partial [Prunus persica]
Length = 972
Score = 77.0 bits (188), Expect(2) = 2e-12
Identities = 58/145 (40%), Positives = 80/145 (55%), Gaps = 5/145 (3%)
Frame = +3
Query: 123 FRPMALCNVLVKGITKIIASKLKPLIGKLTGQQQTSFT-G*SRVVNMIIVQELIRNMKRK 299
FRP++L NV K TKI+ S+L+P++ K + Q +F G S N++I EL + K K
Sbjct: 678 FRPISLYNVSYKITTKIV-SRLRPILAKCISKNQGAFALGRSIFDNILIAHELFHDFKLK 736
Query: 300 IGKKGCMAIIVNLEKAYDRVNRVL*HGS*DCAR*SD--*NNYVLCSVS*VFDHL--EWRL 467
G +G MAI + LEKAYD ++ G D S+ + + C S F L
Sbjct: 737 KGARGAMAIKLELEKAYDLLDWKYIRGCLDQFGFSNDWCDRIMNCVSSTSFSMLINGSPY 796
Query: 468 EHFETSRGV**DDPL*PYIFVLCME 542
HF+ SRG+ DPL PYIF+LCME
Sbjct: 797 GHFKASRGIRQGDPLSPYIFILCME 821
Score = 20.4 bits (41), Expect(2) = 2e-12
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = +1
Query: 79 ISLIPKQECLETVSHLGP 132
I+LIPK E+++H P
Sbjct: 663 IALIPKVASPESINHFRP 680
>gb|AAD37021.1| putative non-LTR retrolelement reverse transcriptase [Arabidopsis
thaliana]
Length = 732
Score = 75.5 bits (184), Expect(2) = 5e-12
Identities = 39/80 (48%), Positives = 56/80 (70%), Gaps = 1/80 (1%)
Frame = +3
Query: 123 FRPMALCNVLVKGITKIIASKLKPLIGKLTGQQQTSF-TG*SRVVNMIIVQELIRNMKRK 299
FRP++LCNVL K ITK + +LK +I KL Q SF +G N++I+QE + +M+RK
Sbjct: 65 FRPISLCNVLFKTITKTLVMRLKRVISKLIRPAQASFISGRLAADNIVIMQEAVHSMRRK 124
Query: 300 IGKKGCMAIIVNLEKAYDRV 359
G+KG M + ++LEKAYDR+
Sbjct: 125 KGRKGWMLLKLDLEKAYDRI 144
Score = 20.8 bits (42), Expect(2) = 5e-12
Identities = 7/15 (46%), Positives = 9/15 (60%)
Frame = +1
Query: 415 IMFCVQSAKFSIIWN 459
IM CV S++WN
Sbjct: 166 IMQCVTEPSMSLLWN 180
>gb|ABO80459.1| RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H
[Medicago truncatula]
Length = 869
Score = 75.1 bits (183), Expect = 1e-11
Identities = 53/148 (35%), Positives = 81/148 (54%), Gaps = 6/148 (4%)
Frame = +3
Query: 117 KSFRPMALCNVLVKGITKIIASKLKPLIGKLTGQQQTSF-TG*SRVVNMIIVQELIRNMK 293
K FRP++L N+ K ITK+I +L+P++ + G Q+SF G N I++QE++ M+
Sbjct: 65 KDFRPISLYNITYKIITKVIVHRLRPILNDIIGPYQSSFLQGRGTSDNSIVLQEIVHFMR 124
Query: 294 RKIGKKGCMAIIVNLEKAYDRVN-RVL*HGS*DCAR*SD*NNYVL-CSVS*VFDHLEW-- 461
R KKG +A ++LEKA+D VN L D D ++ C S F L W
Sbjct: 125 RSKRKKGYVAFKLDLEKAFDNVNWEFLRSCLQDFGFPDDTIKLIMHCVTSSTFSVL-WNG 183
Query: 462 -RLEHFETSRGV**DDPL*PYIFVLCME 542
+ + + G+ DPL PY+F++CME
Sbjct: 184 NKWPPIKPTHGLRQGDPLSPYLFIICME 211
>gb|EMJ08808.1| hypothetical protein PRUPE_ppa018907mg, partial [Prunus persica]
Length = 1566
Score = 73.2 bits (178), Expect = 4e-11
Identities = 53/132 (40%), Positives = 73/132 (55%), Gaps = 5/132 (3%)
Frame = +3
Query: 162 ITKIIASKLKPLIGKLTGQQQTSFT-G*SRVVNMIIVQELIRNMKRKIGKKGCMAIIVNL 338
ITKII S+L+P++ K + Q +F G S N++I EL + KRK G G MAI ++L
Sbjct: 911 ITKIIVSRLRPVLAKCMSKNQGAFAPGRSIFDNILIAHELFHDFKRKKGSMGAMAIKIDL 970
Query: 339 EKAYDRVNRVL*HGS*DCAR*SD--*NNYVLCSVS*VFDHL--EWRLEHFETSRGV**DD 506
EKAYD ++ G + S+ + + C S F L HF+ SRG+ D
Sbjct: 971 EKAYDLLDWKYIRGCLNQFGFSNDWCDRIMNCVSSTSFSMLINGSPYGHFKASRGIFQGD 1030
Query: 507 PL*PYIFVLCME 542
PL PYIF+LCME
Sbjct: 1031 PLSPYIFILCME 1042
>ref|NP_001174443.1| Os05g0434000 [Oryza sativa Japonica Group]
gi|255676397|dbj|BAH93171.1| Os05g0434000 [Oryza sativa
Japonica Group]
Length = 1478
Score = 72.8 bits (177), Expect = 5e-11
Identities = 56/176 (31%), Positives = 90/176 (51%), Gaps = 6/176 (3%)
Frame = +3
Query: 33 VSDGGNFPVGMNEFSDFFDS*TRMSGDSKSFRPMALCNVLVKGITKIIASKLKPLIGKLT 212
V +GG+ P G N+ T+ K RP++LCNV K I+K+I ++LK ++ ++
Sbjct: 822 VLNGGDMPQGWNDTVVVLIPKTKQPDTLKDLRPISLCNVAYKLISKVIVNRLKVVLLEII 881
Query: 213 GQQQTSFTG*SRVV-NMIIVQELIRNM-KRKIGKKGCMAIIVNLEKAYDRVN-RVL*HGS 383
Q++F + N+++ EL + +RK GK G AI +++ KAYDRV L H
Sbjct: 882 SPSQSAFVPRRLITYNVLLAYELTHYLNQRKKGKNGVAAIKLDMSKAYDRVEWDFLRHMM 941
Query: 384 *DCAR*SD*NNYVLCSVS*VFDHLEWRLEHFE---TSRGV**DDPL*PYIFVLCME 542
N V+ V+ V ++ EH + RG+ DPL PY+F++C E
Sbjct: 942 LRLGFHDQWVNLVMKCVTSVTYRIKINGEHSDQIYPQRGLRQGDPLSPYLFIICAE 997
>gb|AAT58873.1| hypothetical protein [Oryza sativa Japonica Group]
Length = 1264
Score = 72.8 bits (177), Expect = 5e-11
Identities = 56/176 (31%), Positives = 90/176 (51%), Gaps = 6/176 (3%)
Frame = +3
Query: 33 VSDGGNFPVGMNEFSDFFDS*TRMSGDSKSFRPMALCNVLVKGITKIIASKLKPLIGKLT 212
V +GG+ P G N+ T+ K RP++LCNV K I+K+I ++LK ++ ++
Sbjct: 822 VLNGGDMPQGWNDTVVVLIPKTKQPDTLKDLRPISLCNVAYKLISKVIVNRLKVVLLEII 881
Query: 213 GQQQTSFTG*SRVV-NMIIVQELIRNM-KRKIGKKGCMAIIVNLEKAYDRVN-RVL*HGS 383
Q++F + N+++ EL + +RK GK G AI +++ KAYDRV L H
Sbjct: 882 SPSQSAFVPRRLITYNVLLAYELTHYLNQRKKGKNGVAAIKLDMSKAYDRVEWDFLRHMM 941
Query: 384 *DCAR*SD*NNYVLCSVS*VFDHLEWRLEHFE---TSRGV**DDPL*PYIFVLCME 542
N V+ V+ V ++ EH + RG+ DPL PY+F++C E
Sbjct: 942 LRLGFHDQWVNLVMKCVTSVTYRIKINGEHSDQIYPQRGLRQGDPLSPYLFIICAE 997
>gb|AAB48350.1| reverse transcriptase, partial [Arabidopsis thaliana]
Length = 198
Score = 67.8 bits (164), Expect(2) = 9e-11
Identities = 35/80 (43%), Positives = 53/80 (66%), Gaps = 1/80 (1%)
Frame = +3
Query: 123 FRPMALCNVLVKGITKIIASKLKPLIGKLTGQQQTSF-TG*SRVVNMIIVQELIRNMKRK 299
FR ++LCNVL K ITK + ++K ++ KL G Q+SF G N+++VQE + M++K
Sbjct: 60 FRAISLCNVLFKAITKTMVGRMKGVMQKLIGPAQSSFIPGRLSTDNIVVVQEAVHPMRKK 119
Query: 300 IGKKGCMAIIVNLEKAYDRV 359
G G M + ++LEKAYDR+
Sbjct: 120 KGVMGWMLLKLDLEKAYDRI 139
Score = 24.3 bits (51), Expect(2) = 9e-11
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = +1
Query: 415 IMFCVQSAKFSIIWNGD 465
IM CV S++WNG+
Sbjct: 161 IMQCVAGPSMSVLWNGE 177
>pir||S65815 RNA-directed DNA polymerase (EC 2.7.7.49) (clone NING13) -
Arabidopsis thaliana retrotransposon Ta28 (fragment)
Length = 183
Score = 67.8 bits (164), Expect(2) = 9e-11
Identities = 35/80 (43%), Positives = 53/80 (66%), Gaps = 1/80 (1%)
Frame = +3
Query: 123 FRPMALCNVLVKGITKIIASKLKPLIGKLTGQQQTSF-TG*SRVVNMIIVQELIRNMKRK 299
FR ++LCNVL K ITK + ++K ++ KL G Q+SF G N+++VQE + M++K
Sbjct: 54 FRAISLCNVLFKAITKTMVGRMKGVMQKLIGPAQSSFIPGRLSTDNIVVVQEAVHPMRKK 113
Query: 300 IGKKGCMAIIVNLEKAYDRV 359
G G M + ++LEKAYDR+
Sbjct: 114 KGVMGWMLLKLDLEKAYDRI 133
Score = 24.3 bits (51), Expect(2) = 9e-11
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = +1
Query: 415 IMFCVQSAKFSIIWNGD 465
IM CV S++WNG+
Sbjct: 155 IMQCVAGPSMSVLWNGE 171
>gb|AEL30359.1| RNA-directed DNA polymerase [Arachis hypogaea]
Length = 1613
Score = 71.2 bits (173), Expect = 1e-10
Identities = 36/83 (43%), Positives = 55/83 (66%), Gaps = 1/83 (1%)
Frame = +3
Query: 117 KSFRPMALCNVLVKGITKIIASKLKPLIGKLTGQQQTSF-TG*SRVVNMIIVQELIRNMK 293
K FRP++LCNV+ K ITK++ ++L+P + ++ G Q F G N+II QE++ MK
Sbjct: 905 KDFRPISLCNVVYKIITKVLVNRLRPHLAEIVGPLQGGFIPGRGTPDNIIIAQEVLHFMK 964
Query: 294 RKIGKKGCMAIIVNLEKAYDRVN 362
+ KKG + ++LEKAYDRV+
Sbjct: 965 KTKSKKGTLTFKIDLEKAYDRVD 987
>ref|XP_002535257.1| conserved hypothetical protein [Ricinus communis]
gi|223523624|gb|EEF27127.1| conserved hypothetical
protein [Ricinus communis]
Length = 220
Score = 70.1 bits (170), Expect = 3e-10
Identities = 42/115 (36%), Positives = 65/115 (56%), Gaps = 1/115 (0%)
Frame = +3
Query: 21 RTEGVSDGGNFPVGMNEFSDFFDS*TRMSGDSKSFRPMALCNVLVKGITKIIASKLKPLI 200
R + V +GG+ + +N + F S FRP+ LCNV K ITK+IA+ LK ++
Sbjct: 73 RFDDVFNGGSIDLEINCTNTFLIPKMDAPESSNHFRPIILCNVTYKLITKVIANHLKIIM 132
Query: 201 GKLTGQQQTSFTG*SRVV-NMIIVQELIRNMKRKIGKKGCMAIIVNLEKAYDRVN 362
K+ Q+S ++ N+IIV+E++ + K G M I V+LEKAYD++N
Sbjct: 133 SKVISPMQSSIVKGRHIMNNIIIVKEILHLTNKMTSKTGYMVIKVDLEKAYDKLN 187
>emb|CCA65995.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1389
Score = 68.9 bits (167), Expect = 7e-10
Identities = 52/150 (34%), Positives = 82/150 (54%), Gaps = 6/150 (4%)
Frame = +3
Query: 111 DSKSFRPMALCNVLVKGITKIIASKLKPLIGKLTGQQQTSFTG*SRVV--NMIIVQELIR 284
++ FRP++LC+ + K I+KII ++LK +GK+ Q +F R++ N++I E+
Sbjct: 516 NANHFRPISLCSTIYKVISKIITNRLKITLGKIIHPLQGAFIP-ERLIQDNILIAHEVFH 574
Query: 285 NMKRKIGKKGCMAIIVNLEKAYDRVNRVL*HGS*DCAR*SD--*NNYVLCSVS*VFDHLE 458
+ K K G+ G +AI +++EKAYDR+ + + D S C S F L
Sbjct: 575 SFKNKTGRGGWIAIKLDMEKAYDRLEWKYIYTTMDKMGFSPIWIEWIRSCISSASFSVLV 634
Query: 459 WRL--EHFETSRGV**DDPL*PYIFVLCME 542
+ E F SRG+ DPL PY+F+LC E
Sbjct: 635 NGIPGERFFPSRGIRQGDPLSPYLFILCAE 664