BLASTX nr result

ID: Catharanthus23_contig00025530 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Catharanthus23_contig00025530
         (640 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002301696.1| predicted protein [Populus trichocarpa] gi|5...    42   7e-07
gb|EOY03995.1| Uncharacterized protein TCM_019232 [Theobroma cacao]    42   1e-06
ref|XP_002305870.1| hypothetical protein POPTR_0004s08700g [Popu...    45   2e-06
ref|XP_006430641.1| hypothetical protein CICLE_v10013536mg [Citr...    42   4e-06
ref|XP_002532967.1| nutrient reservoir, putative [Ricinus commun...    42   4e-06

>ref|XP_002301696.1| predicted protein [Populus trichocarpa]
           gi|566211035|ref|XP_006372591.1| hypothetical protein
           POPTR_0017s03030g [Populus trichocarpa]
           gi|550319220|gb|ERP50388.1| hypothetical protein
           POPTR_0017s03030g [Populus trichocarpa]
          Length = 151

 Score = 42.0 bits (97), Expect(2) = 7e-07
 Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
 Frame = -2

Query: 279 VAPPPPRFAYVTGP-PGKLYPTDPFN-LQIYSGGASRGIYYNNNIHEANYFILIVMMGCG 106
           +APPPPRF YVT   PG +Y TDP+N   +Y G     + +           L++++G G
Sbjct: 95  LAPPPPRFYYVTSTVPGSVYETDPYNRWGLYDGARQNAVTW-----------LLLLIGLG 143

Query: 105 ILLQLLV 85
           +   L++
Sbjct: 144 VTELLVI 150



 Score = 37.7 bits (86), Expect(2) = 7e-07
 Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 14/51 (27%)
 Frame = -3

Query: 503 IYFLLIMFIIC----------ANADDETT----PVVSIKCGECACVNPCSQ 393
           + FLL+ F++C          A   D+T     P   IKCG C CVNPC Q
Sbjct: 6   LLFLLLSFLLCTIIPISRASVAKKLDQTLVPQEPDAGIKCGSCPCVNPCGQ 56


>gb|EOY03995.1| Uncharacterized protein TCM_019232 [Theobroma cacao]
          Length = 147

 Score = 42.4 bits (98), Expect(2) = 1e-06
 Identities = 26/72 (36%), Positives = 35/72 (48%)
 Frame = -2

Query: 315 RFIYYTGLPNNQVAPPPPRFAYVTGPPGKLYPTDPFNLQIYSGGASRGIYYNNNIHEANY 136
           RF Y   +P   + PPPPRF YVTG PG+LY  D  +   +   A R           + 
Sbjct: 83  RFTYCNPVP---MTPPPPRFYYVTGVPGQLYTADADDRWTFFSSAGRD----------DI 129

Query: 135 FILIVMMGCGIL 100
            IL++  G G+L
Sbjct: 130 GILLLSFGFGLL 141



 Score = 36.6 bits (83), Expect(2) = 1e-06
 Identities = 13/19 (68%), Positives = 13/19 (68%)
 Frame = -3

Query: 446 PVVSIKCGECACVNPCSQQ 390
           P   IKCG C CVNPC QQ
Sbjct: 48  PTTEIKCGTCPCVNPCGQQ 66


>ref|XP_002305870.1| hypothetical protein POPTR_0004s08700g [Populus trichocarpa]
           gi|222848834|gb|EEE86381.1| hypothetical protein
           POPTR_0004s08700g [Populus trichocarpa]
          Length = 147

 Score = 45.4 bits (106), Expect(2) = 2e-06
 Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
 Frame = -2

Query: 291 PNNQVAPPPPRFAYVTGPPGKLYPTDPF-NLQIYSGGASRGIYYNNNIHEANYFILIVMM 115
           P   +APPPPRF YVT  PG L  TDP+ + + YSG     + +           L++++
Sbjct: 88  PPPPLAPPPPRFIYVTSVPGSLSETDPYDHWKFYSGARQNPVRW-----------LLLLV 136

Query: 114 GCGILLQLLV 85
           G G++  L++
Sbjct: 137 GLGVIELLVI 146



 Score = 32.7 bits (73), Expect(2) = 2e-06
 Identities = 11/14 (78%), Positives = 12/14 (85%)
 Frame = -3

Query: 434 IKCGECACVNPCSQ 393
           IKCG C CVNPC+Q
Sbjct: 52  IKCGSCPCVNPCAQ 65


>ref|XP_006430641.1| hypothetical protein CICLE_v10013536mg [Citrus clementina]
           gi|557532698|gb|ESR43881.1| hypothetical protein
           CICLE_v10013536mg [Citrus clementina]
          Length = 152

 Score = 42.0 bits (97), Expect(2) = 4e-06
 Identities = 19/37 (51%), Positives = 22/37 (59%)
 Frame = -2

Query: 300 TGLPNNQVAPPPPRFAYVTGPPGKLYPTDPFNLQIYS 190
           T  P     PPPPRF YVTG PG++Y TD  +   YS
Sbjct: 88  TYCPPQVQTPPPPRFIYVTGEPGEIYHTDSDDWGFYS 124



 Score = 35.0 bits (79), Expect(2) = 4e-06
 Identities = 13/18 (72%), Positives = 13/18 (72%)
 Frame = -3

Query: 446 PVVSIKCGECACVNPCSQ 393
           P  SIKCG C CVNPC Q
Sbjct: 50  PDTSIKCGTCPCVNPCGQ 67


>ref|XP_002532967.1| nutrient reservoir, putative [Ricinus communis]
           gi|223527260|gb|EEF29418.1| nutrient reservoir, putative
           [Ricinus communis]
          Length = 134

 Score = 42.0 bits (97), Expect(2) = 4e-06
 Identities = 20/39 (51%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
 Frame = -2

Query: 279 VAPPPPRFAYVTGPP--GKLYPTDPFNLQIYSGGASRGI 169
           +APPPPRF YVTG P  G LY TDP+    Y   A+  +
Sbjct: 76  LAPPPPRFIYVTGVPGNGNLYVTDPYENWDYYSDATHNV 114



 Score = 35.0 bits (79), Expect(2) = 4e-06
 Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 14/52 (26%)
 Frame = -3

Query: 506 YIYFLLIMFII---CANAD-----DETT------PVVSIKCGECACVNPCSQ 393
           +++FL ++F     CA        D+T       P   IKCG C CVNPC+Q
Sbjct: 4   FLFFLFLIFFAVPSCAATSVTKKLDQTLVPQPQEPDAGIKCGSCPCVNPCAQ 55


Top