BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Catharanthus23_contig00024880
         (235 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BAA02269.1| reverse transcriptase [Petroselinum crispum]           72   6e-11
gb|ADJ18449.1| gag/pol protein [Bryonia dioica]                        72   6e-11
emb|CAN69397.1| hypothetical protein VITISV_021035 [Vitis vinifera]    70   4e-10
pir||B47758 retrovirus-related reverse transcriptase homolog - P...    68   1e-09
gb|AGX45509.1| reverse transcriptase, partial [Prunus salicina]        67   3e-09
emb|CAN77149.1| hypothetical protein VITISV_019364 [Vitis vinifera]    63   4e-08
gb|ADE44145.1| reverse transcriptase [Corchorus olitorius]             63   5e-08
gb|ADB85429.1| putative retrotransposon protein [Phyllostachys e...    62   6e-08
gb|ABU94830.1| reverse transcriptase [Panax ginseng]                   62   6e-08
emb|CAN68020.1| hypothetical protein VITISV_003621 [Vitis vinifera]    62   6e-08
emb|CAN63026.1| hypothetical protein VITISV_026313 [Vitis vinifera]    62   6e-08
gb|AAG44314.1|AF232965_1 reverse transcriptase-like protein [Ama...    62   6e-08
gb|ABU94836.1| reverse transcriptase [Panax ginseng]                   62   8e-08
gb|AAA33373.1| reverse transcriptase, partial [Helianthus annuus]      62   1e-07
gb|ABU94829.1| reverse transcriptase [Panax ginseng]                   62   1e-07
emb|CAN83286.1| hypothetical protein VITISV_018187 [Vitis vinifera]    62   1e-07
emb|CAN77984.1| hypothetical protein VITISV_018850 [Vitis vinifera]    62   1e-07
emb|CAN64055.1| hypothetical protein VITISV_044406 [Vitis vinifera]    61   1e-07
gb|ADF45772.1| reverse transcriptase [Eleocharis acicularis]           60   2e-07
gb|ADB85430.1| putative retrotransposon protein [Phyllostachys e...    60   2e-07

>dbj|BAA02269.1| reverse transcriptase [Petroselinum crispum]
          Length = 81

 Score = 72.4 bits (176), Expect = 6e-11
 Identities = 35/72 (48%), Positives = 49/72 (68%)
 Frame = +3

Query: 9   LSKDV*ME*PDKFIARGQEYLVCKLKRSMLGSKQATRSWNIFFSETIKFYGFMQNLDEPY 188
           L +DV M  P+ F++ G E+L+CKL R++ G +QA+R WNI F ETIK +GF++NLDEP 
Sbjct: 7   LEEDVYMTQPEGFVSIGNEHLICKLLRTIYGLRQASRRWNIRFDETIKEFGFIKNLDEPC 66

Query: 189 TLQKNINIAEVF 224
             +K    A  F
Sbjct: 67  VYKKVSGSAVTF 78


>gb|ADJ18449.1| gag/pol protein [Bryonia dioica]
          Length = 1292

 Score = 72.4 bits (176), Expect = 6e-11
 Identities = 36/72 (50%), Positives = 47/72 (65%)
 Frame = +3

Query: 9    LSKDV*ME*PDKFIARGQEYLVCKLKRSMLGSKQATRSWNIFFSETIKFYGFMQNLDEPY 188
            L + + M  P+ FIA+ QE  VCKL++S+ G KQA+RSWNI F   IK YGF QN+DEP 
Sbjct: 926  LEESIYMVQPEGFIAQDQEQKVCKLQKSIYGLKQASRSWNIRFDTAIKSYGFEQNVDEPC 985

Query: 189  TLQKNINIAEVF 224
              +K +N    F
Sbjct: 986  VYKKIVNSVVAF 997


>emb|CAN69397.1| hypothetical protein VITISV_021035 [Vitis vinifera]
          Length = 668

 Score = 69.7 bits (169), Expect = 4e-10
 Identities = 33/59 (55%), Positives = 42/59 (71%)
 Frame = +3

Query: 9   LSKDV*ME*PDKFIARGQEYLVCKLKRSMLGSKQATRSWNIFFSETIKFYGFMQNLDEP 185
           L + + M  P+ F+ + QE  VCKL+RS+ G KQA+RSWNI F+E IK YGF QNL EP
Sbjct: 266 LEETIYMVQPEGFVVKDQEQKVCKLQRSIYGLKQASRSWNIIFNEAIKSYGFEQNLGEP 324


>pir||B47758 retrovirus-related reverse transcriptase homolog - Platanus
           occidentalis retrotransposon copia-like (fragment)
           gi|169643|gb|AAA33850.1| reverse transcriptase, partial
           [Platanus occidentalis]
          Length = 88

 Score = 67.8 bits (164), Expect = 1e-09
 Identities = 36/73 (49%), Positives = 48/73 (65%)
 Frame = +3

Query: 6   ILSKDV*ME*PDKFIARGQEYLVCKLKRSMLGSKQATRSWNIFFSETIKFYGFMQNLDEP 185
           IL++++ M  P  F+  GQE  VCKL+RS+ G KQA+RSWNI F + IK +GF QN +EP
Sbjct: 8   ILNEEIYMLQPKGFVYPGQESKVCKLERSIYGLKQASRSWNIRFDQAIKSFGFEQNPEEP 67

Query: 186 YTLQKNINIAEVF 224
              +K    A VF
Sbjct: 68  CVYKKVNENAVVF 80


>gb|AGX45509.1| reverse transcriptase, partial [Prunus salicina]
          Length = 88

 Score = 66.6 bits (161), Expect = 3e-09
 Identities = 33/72 (45%), Positives = 48/72 (66%)
 Frame = +3

Query: 9   LSKDV*ME*PDKFIARGQEYLVCKLKRSMLGSKQATRSWNIFFSETIKFYGFMQNLDEPY 188
           L +++ M+ P+ FI++ + + VCKL+RS+ G KQA+RSWN+ F E IK + F QN DEP 
Sbjct: 8   LQEELYMDQPEGFISKTESHKVCKLQRSIYGLKQASRSWNLRFDEAIKSFDFSQNGDEPC 67

Query: 189 TLQKNINIAEVF 224
             +K    A VF
Sbjct: 68  VYKKVSGSAVVF 79


>emb|CAN77149.1| hypothetical protein VITISV_019364 [Vitis vinifera]
          Length = 1544

 Score = 63.2 bits (152), Expect = 4e-08
 Identities = 31/64 (48%), Positives = 42/64 (65%)
 Frame = +3

Query: 9    LSKDV*ME*PDKFIARGQEYLVCKLKRSMLGSKQATRSWNIFFSETIKFYGFMQNLDEPY 188
            L + + M+ P+ FI  GQE+L+CKL RS+ G KQ +RSWN  F +TIK +GF Q  DE  
Sbjct: 1213 LDECIYMKQPEGFITNGQEHLLCKLNRSIYGLKQTSRSWNTCFDQTIKTFGFDQCHDESC 1272

Query: 189  TLQK 200
              +K
Sbjct: 1273 VYKK 1276


>gb|ADE44145.1| reverse transcriptase [Corchorus olitorius]
          Length = 88

 Score = 62.8 bits (151), Expect = 5e-08
 Identities = 30/64 (46%), Positives = 43/64 (67%)
 Frame = +3

Query: 9   LSKDV*ME*PDKFIARGQEYLVCKLKRSMLGSKQATRSWNIFFSETIKFYGFMQNLDEPY 188
           L KDV M  P+ F+       VCKL+RS+ G KQA+RSWN+ F++ +K +GF++N DEP 
Sbjct: 8   LHKDVYMTQPEGFVTPQNAGKVCKLQRSIYGLKQASRSWNLRFNDAVKEFGFIKNEDEPC 67

Query: 189 TLQK 200
             +K
Sbjct: 68  VYKK 71


>gb|ADB85429.1| putative retrotransposon protein [Phyllostachys edulis]
          Length = 1313

 Score = 62.4 bits (150), Expect = 6e-08
 Identities = 31/64 (48%), Positives = 42/64 (65%)
 Frame = +3

Query: 9    LSKDV*ME*PDKFIARGQEYLVCKLKRSMLGSKQATRSWNIFFSETIKFYGFMQNLDEPY 188
            LS+DV M  P+ F+       VCKL++S+ G KQA+RSWNI F E IK +GF++N +EP 
Sbjct: 912  LSEDVYMTQPEGFVDPNNASKVCKLQKSIYGLKQASRSWNIRFDEEIKRFGFVKNKEEPC 971

Query: 189  TLQK 200
               K
Sbjct: 972  VYMK 975


>gb|ABU94830.1| reverse transcriptase [Panax ginseng]
          Length = 81

 Score = 62.4 bits (150), Expect = 6e-08
 Identities = 32/64 (50%), Positives = 43/64 (67%)
 Frame = +3

Query: 9   LSKDV*ME*PDKFIARGQEYLVCKLKRSMLGSKQATRSWNIFFSETIKFYGFMQNLDEPY 188
           L +DV M  P+ FI++     VCKL+RS+ G KQA+R WNI F ETIK + F++N DEP 
Sbjct: 7   LEEDVYMTQPEGFISKVGTNQVCKLQRSIYGLKQASRRWNIRFDETIKEFDFIKNEDEPC 66

Query: 189 TLQK 200
             +K
Sbjct: 67  VYKK 70


>emb|CAN68020.1| hypothetical protein VITISV_003621 [Vitis vinifera]
          Length = 1180

 Score = 62.4 bits (150), Expect = 6e-08
 Identities = 28/56 (50%), Positives = 40/56 (71%)
 Frame = +3

Query: 9    LSKDV*ME*PDKFIARGQEYLVCKLKRSMLGSKQATRSWNIFFSETIKFYGFMQNL 176
            L +D+ ME P+ F  +G E+LVCKLK+S+ G KQA+R W I F+ TI  +GF +N+
Sbjct: 876  LDEDIYMEQPEGFAKKGNEHLVCKLKKSIYGLKQASRQWYIKFNNTITSFGFKENI 931


>emb|CAN63026.1| hypothetical protein VITISV_026313 [Vitis vinifera]
          Length = 345

 Score = 62.4 bits (150), Expect = 6e-08
 Identities = 28/56 (50%), Positives = 40/56 (71%)
 Frame = +3

Query: 9   LSKDV*ME*PDKFIARGQEYLVCKLKRSMLGSKQATRSWNIFFSETIKFYGFMQNL 176
           L +D+ ME P+ F  +G E+LVCKLK+S+ G KQA+R W I F+ TI  +GF +N+
Sbjct: 25  LDEDIYMEQPEGFAKKGNEHLVCKLKKSIYGLKQASRQWYIKFNNTITSFGFKENI 80


>gb|AAG44314.1|AF232965_1 reverse transcriptase-like protein [Amaranthus cruentus]
          Length = 94

 Score = 62.4 bits (150), Expect = 6e-08
 Identities = 33/72 (45%), Positives = 44/72 (61%)
 Frame = +3

Query: 9   LSKDV*ME*PDKFIARGQEYLVCKLKRSMLGSKQATRSWNIFFSETIKFYGFMQNLDEPY 188
           L +DV M  P+ F        VCKLK+S+ G KQA+RSWN+ F E IK +GF++N DEP 
Sbjct: 13  LEEDVYMTQPEGFHDPENPKKVCKLKKSIYGLKQASRSWNLRFDEAIKMFGFLKNEDEPC 72

Query: 189 TLQKNINIAEVF 224
             +K    + VF
Sbjct: 73  VYKKFSGSSIVF 84


>gb|ABU94836.1| reverse transcriptase [Panax ginseng]
          Length = 81

 Score = 62.0 bits (149), Expect = 8e-08
 Identities = 31/64 (48%), Positives = 43/64 (67%)
 Frame = +3

Query: 9   LSKDV*ME*PDKFIARGQEYLVCKLKRSMLGSKQATRSWNIFFSETIKFYGFMQNLDEPY 188
           L +DV M  P+ F+++     VCKL+RS+ G KQA+R WNI F ETIK + F++N DEP 
Sbjct: 7   LEEDVYMTQPEGFVSKVGTNQVCKLQRSIYGLKQASRRWNIRFDETIKEFDFIKNEDEPC 66

Query: 189 TLQK 200
             +K
Sbjct: 67  VYKK 70


>gb|AAA33373.1| reverse transcriptase, partial [Helianthus annuus]
          Length = 88

 Score = 61.6 bits (148), Expect = 1e-07
 Identities = 31/64 (48%), Positives = 42/64 (65%)
 Frame = +3

Query: 9   LSKDV*ME*PDKFIARGQEYLVCKLKRSMLGSKQATRSWNIFFSETIKFYGFMQNLDEPY 188
           LS+DV M  PD F+       VCKL +S+ G KQA+RSWN+ F + IK +GF++N DEP 
Sbjct: 9   LSEDVYMVQPDGFVDPKYPNRVCKLNKSIYGLKQASRSWNLRFDQKIKEFGFVKNEDEPC 68

Query: 189 TLQK 200
             +K
Sbjct: 69  VYRK 72


>gb|ABU94829.1| reverse transcriptase [Panax ginseng]
          Length = 81

 Score = 61.6 bits (148), Expect = 1e-07
 Identities = 32/72 (44%), Positives = 46/72 (63%)
 Frame = +3

Query: 9   LSKDV*ME*PDKFIARGQEYLVCKLKRSMLGSKQATRSWNIFFSETIKFYGFMQNLDEPY 188
           L +DV M  P+ F+++     VCKL+RS+ G KQA++ WNI F ETIK + F++N DEP 
Sbjct: 7   LEEDVYMTQPEGFVSKVGTNQVCKLQRSIYGLKQASQRWNIHFDETIKEFDFIKNEDEPC 66

Query: 189 TLQKNINIAEVF 224
             +K    A +F
Sbjct: 67  VYKKVSGSALLF 78


>emb|CAN83286.1| hypothetical protein VITISV_018187 [Vitis vinifera]
          Length = 1323

 Score = 61.6 bits (148), Expect = 1e-07
 Identities = 28/55 (50%), Positives = 39/55 (70%)
 Frame = +3

Query: 9   LSKDV*ME*PDKFIARGQEYLVCKLKRSMLGSKQATRSWNIFFSETIKFYGFMQN 173
           L +D+ ME P+ F  +G E+LVCKLK+S+ G KQA+R W I F+ TI  +GF +N
Sbjct: 542 LDEDIYMEQPEGFAKKGNEHLVCKLKKSIYGLKQASRQWYIKFNNTITSFGFKEN 596


>emb|CAN77984.1| hypothetical protein VITISV_018850 [Vitis vinifera]
          Length = 93

 Score = 61.6 bits (148), Expect = 1e-07
 Identities = 28/55 (50%), Positives = 39/55 (70%)
 Frame = +3

Query: 9   LSKDV*ME*PDKFIARGQEYLVCKLKRSMLGSKQATRSWNIFFSETIKFYGFMQN 173
           L +D+ ME P+ F  +G E+LVCKLK+S+ G KQA+R W I F+ TI  +GF +N
Sbjct: 12  LDEDIYMEQPEGFAKKGNEHLVCKLKKSIYGIKQASRQWYIKFNNTITSFGFKEN 66


>emb|CAN64055.1| hypothetical protein VITISV_044406 [Vitis vinifera]
          Length = 633

 Score = 61.2 bits (147), Expect = 1e-07
 Identities = 31/64 (48%), Positives = 42/64 (65%)
 Frame = +3

Query: 9   LSKDV*ME*PDKFIARGQEYLVCKLKRSMLGSKQATRSWNIFFSETIKFYGFMQNLDEPY 188
           L + + M+  + FI  GQE+L+CKL RS+ G KQA+RSWN  F +TIK +GF Q  DE  
Sbjct: 231 LDECIYMKQXEGFIXNGQEHLLCKLNRSIYGLKQASRSWNTCFDQTIKTFGFDQCHDESC 290

Query: 189 TLQK 200
             +K
Sbjct: 291 VYKK 294


>gb|ADF45772.1| reverse transcriptase [Eleocharis acicularis]
          Length = 87

 Score = 60.5 bits (145), Expect = 2e-07
 Identities = 31/73 (42%), Positives = 45/73 (61%)
 Frame = +3

Query: 6   ILSKDV*ME*PDKFIARGQEYLVCKLKRSMLGSKQATRSWNIFFSETIKFYGFMQNLDEP 185
           +L +DV M  PD F+   +   +CKLKRS+ G KQA+R+WNI F + +K  GF++N  EP
Sbjct: 7   VLDEDVYMVQPDGFVDPEKAGKICKLKRSIYGLKQASRTWNIRFDDEVKELGFLRNPKEP 66

Query: 186 YTLQKNINIAEVF 224
              +K    + VF
Sbjct: 67  CVYKKLSGSSVVF 79


>gb|ADB85430.1| putative retrotransposon protein [Phyllostachys edulis]
          Length = 896

 Score = 60.5 bits (145), Expect = 2e-07
 Identities = 30/64 (46%), Positives = 41/64 (64%)
 Frame = +3

Query: 9   LSKDV*ME*PDKFIARGQEYLVCKLKRSMLGSKQATRSWNIFFSETIKFYGFMQNLDEPY 188
           L +DV M  P+ F+       VCKL++S+ G KQA+RSWNI F E IK +GF++N +EP 
Sbjct: 496 LHEDVYMTQPEGFVDPNNASKVCKLQKSIYGLKQASRSWNIRFDEEIKRFGFIKNKEEPC 555

Query: 189 TLQK 200
              K
Sbjct: 556 VYMK 559