BLASTX nr result
ID: Catharanthus23_contig00023893
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Catharanthus23_contig00023893
(1183 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAE79385.1| unnamed protein product [Ipomoea batatas] 102 1e-31
dbj|BAE79382.1| unnamed protein product [Ipomoea batatas] 101 1e-31
dbj|BAE79384.1| unnamed protein product [Ipomoea batatas] 101 2e-31
emb|CCA66009.1| hypothetical protein [Beta vulgaris subsp. vulga... 69 5e-25
gb|ABD28505.2| RNA-directed DNA polymerase (Reverse transcriptas... 54 2e-22
gb|AAD22368.1| putative non-LTR retroelement reverse transcripta... 72 4e-21
gb|AAF23831.1|AC007234_3 F1E22.12 [Arabidopsis thaliana] 68 1e-20
sp|P0C2F6.1|RNHX1_ARATH RecName: Full=Putative ribonuclease H pr... 68 1e-20
gb|AAC26674.1| putative non-LTR retroelement reverse transcripta... 64 3e-20
gb|AAC63844.1| putative non-LTR retroelement reverse transcripta... 67 3e-17
emb|CCA65997.1| hypothetical protein [Beta vulgaris subsp. vulga... 72 4e-17
gb|EOY19161.1| Polynucleotidyl transferase, putative [Theobroma ... 71 6e-17
emb|CAB78008.1| putative protein [Arabidopsis thaliana] gi|73210... 49 7e-17
gb|EOY34747.1| Uncharacterized protein TCM_042327 [Theobroma cacao] 90 5e-16
gb|EMJ08167.1| hypothetical protein PRUPE_ppb019197mg [Prunus pe... 75 8e-16
gb|EOY02505.1| RNA-binding (RRM/RBD/RNP motifs) family protein i... 89 2e-15
ref|XP_002309989.1| predicted protein [Populus trichocarpa] 85 6e-15
ref|XP_002314708.1| predicted protein [Populus trichocarpa] 84 1e-14
gb|EOY14356.1| Uncharacterized protein TCM_033752 [Theobroma cacao] 84 8e-14
gb|AAF97302.1|AC007843_5 Hypothetical protein [Arabidopsis thali... 75 8e-14
>dbj|BAE79385.1| unnamed protein product [Ipomoea batatas]
Length = 1366
Score = 102 bits (253), Expect(4) = 1e-31
Identities = 50/111 (45%), Positives = 77/111 (69%), Gaps = 1/111 (0%)
Frame = -3
Query: 488 AGAGGLIRDERGNKVMGFYRHIGTTTNTIAELWAVRDGLILARDKNISNIVLEVDAEVVV 309
A AGGL+R+E G V G+ +IGT + +AELW +R+GL+LA+++ + ++ E D+E VV
Sbjct: 1223 ASAGGLLRNENGLWVAGYICNIGTANSFLAELWGLREGLLLAKNRGFTKLIAETDSEAVV 1282
Query: 308 YLLQQEPVPLHPSFNILC-DCRSLLSIFQSVSIRHVHRVGNKCADFLANQG 159
+L+++ P+ P +IL DC+ LL FQ + + H+ R GN+CADFLAN G
Sbjct: 1283 QVLRKDG-PVTPDASILVKDCKLLLDHFQEIKVTHILREGNQCADFLANLG 1332
Score = 43.9 bits (102), Expect(4) = 1e-31
Identities = 30/116 (25%), Positives = 46/116 (39%), Gaps = 2/116 (1%)
Frame = -2
Query: 987 FLWLCNHDXXXXXXXXXXXRVVDSAICEGCRGEEVTLDDLLRRCPKAIDLWLKLGLQNTL 808
F+W + + D+A C C E+ TLD L RRC A W T
Sbjct: 1052 FMWKIVKNGLMVNVERKRRGLADAASCPVCGEEDETLDHLFRRCLLAEACWDSAVPPLTF 1111
Query: 807 TSS--LSVHKWLEINS*TDSISQFNNLPSSTLFAYACWTIWYYRNKRKFEPHSILP 646
+S L +H W++ + + S +F Y W +W RN+ F+ + P
Sbjct: 1112 QTSNHLHMHSWMKAACSSQQKDGYGT-NWSLIFPYILWNLWKARNRLVFDNNITAP 1166
Score = 32.0 bits (71), Expect(4) = 1e-31
Identities = 16/69 (23%), Positives = 30/69 (43%)
Frame = -3
Query: 1166 IHAIPFSNLATRPDNTRWIGTNNGEFSSKSAWNLLLDQEHTEDGNWDWVWDVKAAPRIKT 987
+ A P + + + D W + G + SA++L+ + +D + DW+W +IK
Sbjct: 993 VRATPIAINSEQEDFLSWPHSTTGMVTVSSAYSLIAGHDG-DDRSHDWIWRATCTEKIKL 1051
Query: 986 FFGSATMTG 960
F G
Sbjct: 1052 FMWKIVKNG 1060
Score = 27.3 bits (59), Expect(4) = 1e-31
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = -1
Query: 541 PAGGFLKLNTDGASKGN 491
PA GF KLN+DGA K +
Sbjct: 1203 PAAGFTKLNSDGACKSH 1219
>dbj|BAE79382.1| unnamed protein product [Ipomoea batatas]
Length = 1366
Score = 101 bits (252), Expect(4) = 1e-31
Identities = 50/111 (45%), Positives = 77/111 (69%), Gaps = 1/111 (0%)
Frame = -3
Query: 488 AGAGGLIRDERGNKVMGFYRHIGTTTNTIAELWAVRDGLILARDKNISNIVLEVDAEVVV 309
A AGGL+R+E G V G+ +IGT + +AELW +R+GL+LA+++ + ++ E D+E VV
Sbjct: 1223 ASAGGLLRNENGLWVAGYTCNIGTANSFLAELWGLREGLLLAKNRGFTKLIAETDSEAVV 1282
Query: 308 YLLQQEPVPLHPSFNILC-DCRSLLSIFQSVSIRHVHRVGNKCADFLANQG 159
+L+++ P+ P +IL DC+ LL FQ + + H+ R GN+CADFLAN G
Sbjct: 1283 QVLRKDG-PVTPDASILVKDCKLLLDHFQEIKVTHILREGNQCADFLANLG 1332
Score = 44.3 bits (103), Expect(4) = 1e-31
Identities = 30/116 (25%), Positives = 47/116 (40%), Gaps = 2/116 (1%)
Frame = -2
Query: 987 FLWLCNHDXXXXXXXXXXXRVVDSAICEGCRGEEVTLDDLLRRCPKAIDLWLKLGLQNTL 808
F+W + + D+A C C E+ TLD L RRC A W T
Sbjct: 1052 FMWKIVKNGLMVNVERKRRGLADAASCPVCGEEDETLDHLFRRCLLAEACWDSAVPPLTF 1111
Query: 807 TSS--LSVHKWLEINS*TDSISQFNNLPSSTLFAYACWTIWYYRNKRKFEPHSILP 646
+S L +H W++ + ++ S +F Y W +W RN+ F+ + P
Sbjct: 1112 QTSNHLHMHSWMKAACSSQQKDGYST-NWSLIFPYILWNLWKARNRLVFDNNITAP 1166
Score = 32.0 bits (71), Expect(4) = 1e-31
Identities = 16/69 (23%), Positives = 30/69 (43%)
Frame = -3
Query: 1166 IHAIPFSNLATRPDNTRWIGTNNGEFSSKSAWNLLLDQEHTEDGNWDWVWDVKAAPRIKT 987
+ A P + + + D W + G + SA++L+ + +D + DW+W +IK
Sbjct: 993 VRATPIAINSEQEDFLSWPHSTTGMVTVSSAYSLIAGHDG-DDRSHDWIWRATCTEKIKL 1051
Query: 986 FFGSATMTG 960
F G
Sbjct: 1052 FMWKIVKNG 1060
Score = 27.3 bits (59), Expect(4) = 1e-31
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = -1
Query: 541 PAGGFLKLNTDGASKGN 491
PA GF KLN+DGA K +
Sbjct: 1203 PAAGFTKLNSDGACKSH 1219
>dbj|BAE79384.1| unnamed protein product [Ipomoea batatas]
Length = 1898
Score = 101 bits (252), Expect(4) = 2e-31
Identities = 50/111 (45%), Positives = 77/111 (69%), Gaps = 1/111 (0%)
Frame = -3
Query: 488 AGAGGLIRDERGNKVMGFYRHIGTTTNTIAELWAVRDGLILARDKNISNIVLEVDAEVVV 309
A AGGL+R+E G V G+ +IGT + +AELW +R+GL+LA+++ + ++ E D+E VV
Sbjct: 1755 ASAGGLLRNENGLWVAGYTCNIGTANSFLAELWGLREGLLLAKNRGFTKLIAETDSEAVV 1814
Query: 308 YLLQQEPVPLHPSFNILC-DCRSLLSIFQSVSIRHVHRVGNKCADFLANQG 159
+L+++ P+ P +IL DC+ LL FQ + + H+ R GN+CADFLAN G
Sbjct: 1815 QVLRKDG-PVTPDASILVKDCKLLLDHFQEIKVTHILREGNQCADFLANLG 1864
Score = 43.9 bits (102), Expect(4) = 2e-31
Identities = 30/116 (25%), Positives = 46/116 (39%), Gaps = 2/116 (1%)
Frame = -2
Query: 987 FLWLCNHDXXXXXXXXXXXRVVDSAICEGCRGEEVTLDDLLRRCPKAIDLWLKLGLQNTL 808
F+W + + D+A C C E+ TLD L RRC A W T
Sbjct: 1584 FMWKIVKNGLMVNVERKRRGLADAASCPVCGEEDETLDHLFRRCLLAEACWDSAVPPLTF 1643
Query: 807 TSS--LSVHKWLEINS*TDSISQFNNLPSSTLFAYACWTIWYYRNKRKFEPHSILP 646
+S L +H W++ + + S +F Y W +W RN+ F+ + P
Sbjct: 1644 QTSNHLHMHSWMKAACSSQQKDGYGT-NWSLIFPYILWNLWKARNRLVFDNNITAP 1698
Score = 31.2 bits (69), Expect(4) = 2e-31
Identities = 18/70 (25%), Positives = 30/70 (42%), Gaps = 1/70 (1%)
Frame = -3
Query: 1166 IHAIPFSNLATRPDNTRWIGTNNGEFSSKSAWNLLLDQEHTEDG-NWDWVWDVKAAPRIK 990
+ A P + + + D W + G + SA++L+ H DG + DW+W +IK
Sbjct: 1525 VRATPIAINSEQEDFPSWPHSTTGMVTVSSAYSLIAG--HDGDGRSHDWIWRATCTEKIK 1582
Query: 989 TFFGSATMTG 960
F G
Sbjct: 1583 LFMWKIVKNG 1592
Score = 27.3 bits (59), Expect(4) = 2e-31
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = -1
Query: 541 PAGGFLKLNTDGASKGN 491
PA GF KLN+DGA K +
Sbjct: 1735 PAAGFTKLNSDGACKSH 1751
>emb|CCA66009.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1378
Score = 69.3 bits (168), Expect(3) = 5e-25
Identities = 47/128 (36%), Positives = 69/128 (53%), Gaps = 1/128 (0%)
Frame = -3
Query: 488 AGAGGLIRDERGNKVMGFYRHIGTTTNTIAELWAVRDGLILARDKNISNIVLEVDAEVVV 309
AG GGLIR RG F + G+ T T AEL AV GL++A + N +++ VD+E+V
Sbjct: 1232 AGGGGLIRGPRGEIHEVFAINCGSCTCTKAELLAVLRGLMIAWEGNHKQVIVSVDSELVA 1291
Query: 308 YLLQQEPVPLHPSFNILCDCRSLLSIFQ-SVSIRHVHRVGNKCADFLANQGCNYANLDYV 132
LL P P +I+ C SL++ + + I H +R N+ AD LAN G ++ V
Sbjct: 1292 KLLISNAPPSSPYIHIINRCLSLIARKEWKIVIEHCYRETNRAADRLANMG--VCAVERV 1349
Query: 131 CLFEPTPE 108
+ E P+
Sbjct: 1350 VMIEAIPK 1357
Score = 62.0 bits (149), Expect(3) = 5e-25
Identities = 48/160 (30%), Positives = 70/160 (43%), Gaps = 8/160 (5%)
Frame = -2
Query: 987 FLWLCNHDXXXXXXXXXXXRVVDSAICEGCRGEEVTLDDLLRRCPKAIDLWLKLG-LQNT 811
F+WL D R+ D C C E D +LRRCP A LW KLG L
Sbjct: 1059 FIWLAIQDRLMTNSNRFLRRLTDDPRCLVCGEVEENTDHILRRCPVARILWRKLGMLGEH 1118
Query: 810 LTSSLSVHKWLEINS*TDSISQFNNLPSSTLFAYACWTIWYYRNKRKFEPHSILP-DHKS 634
+++ W+ N D++ L +FA +CW +W +RN R F + +P D S
Sbjct: 1119 NREEINLGSWITKNLSADTMMGSEWL---RVFAVSCWWLWRWRNDRCFNRNPSIPIDQVS 1175
Query: 633 FCLSKAGEF---Y*RGPDNKGTRSTRSR--IISW-VPRQG 532
F ++ E R NK S R + ++ W P++G
Sbjct: 1176 FIFARVKEIKEAMDRNDTNKSQHSGRRKEILVRWQCPKEG 1215
Score = 31.2 bits (69), Expect(3) = 5e-25
Identities = 13/17 (76%), Positives = 15/17 (88%)
Frame = -1
Query: 541 PAGGFLKLNTDGASKGN 491
P G++KLNTDGASKGN
Sbjct: 1212 PKEGWVKLNTDGASKGN 1228
>gb|ABD28505.2| RNA-directed DNA polymerase (Reverse transcriptase);
Polynucleotidyl transferase, Ribonuclease H fold
[Medicago truncatula]
Length = 729
Score = 53.9 bits (128), Expect(4) = 2e-22
Identities = 36/127 (28%), Positives = 52/127 (40%), Gaps = 2/127 (1%)
Frame = -2
Query: 993 QDFLWLCNHDXXXXXXXXXXXRVVDSAICEGCRGEEVTLDDLLRRCPKAIDLWLKLGLQN 814
Q F+WL H V S C C E+ T+ +LR C + +WL+L N
Sbjct: 477 QTFIWLAAHGRILTNYRRSKWGVGISPTCPCCAREDETVIHVLRDCVHSTQVWLRLIPHN 536
Query: 813 TLTS--SLSVHKWLEINS*TDSISQFNNLPSSTLFAYACWTIWYYRNKRKFEPHSILPDH 640
+T+ S +W+ N I N T F CW +W +RNK FE P +
Sbjct: 537 YITNFFSFDCREWVFNNLNKKGIGD-NPATWQTTFMTTCWYLWNWRNKSIFEIGFQRPSN 595
Query: 639 KSFCLSK 619
+ + K
Sbjct: 596 PTLVIQK 602
Score = 50.8 bits (120), Expect(4) = 2e-22
Identities = 23/69 (33%), Positives = 41/69 (59%)
Frame = -3
Query: 509 WSFQG*FAGAGGLIRDERGNKVMGFYRHIGTTTNTIAELWAVRDGLILARDKNISNIVLE 330
W G AG GGL+RD G + G+++ IG AE+W + GL +A +N +++++E
Sbjct: 644 WKGSGTLAGCGGLLRDSDGRWIKGYFKKIGMCDAFHAEMWGMYLGLDMAWRENTTHLIVE 703
Query: 329 VDAEVVVYL 303
D++++ L
Sbjct: 704 SDSKILSLL 712
Score = 44.7 bits (104), Expect(4) = 2e-22
Identities = 22/66 (33%), Positives = 36/66 (54%)
Frame = -3
Query: 1181 ELQKRIHAIPFSNLATRPDNTRWIGTNNGEFSSKSAWNLLLDQEHTEDGNWDWVWDVKAA 1002
++ +I A+P + PD W GTN +F+ +SA+NL + G+W +W+ K
Sbjct: 414 DIVNQILALPTPSDFDGPDTIGWGGTNTLKFTVQSAYNLQQENPFAVGGDWKTLWNWKGP 473
Query: 1001 PRIKTF 984
RI+TF
Sbjct: 474 HRIQTF 479
Score = 23.9 bits (50), Expect(4) = 2e-22
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = -1
Query: 541 PAGGFLKLNTDGASKGN 491
P G++KLN DGA KG+
Sbjct: 631 PPFGWVKLNCDGAWKGS 647
>gb|AAD22368.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 321
Score = 72.4 bits (176), Expect(3) = 4e-21
Identities = 44/109 (40%), Positives = 59/109 (54%)
Frame = -3
Query: 491 FAGAGGLIRDERGNKVMGFYRHIGTTTNTIAELWAVRDGLILARDKNISNIVLEVDAEVV 312
FA AGG++RD G + GF +IG + +AELW V GL +A + + LEVD+++V
Sbjct: 175 FATAGGVLRDHNGAWIGGFAVNIGVCSAPLAELWGVYYGLFIAWGRGARRVELEVDSKMV 234
Query: 311 VYLLQQEPVPLHPSFNILCDCRSLLSIFQSVSIRHVHRVGNKCADFLAN 165
V L HP +L C LS V I HV+R N+ AD LAN
Sbjct: 235 VGFLTTGIADSHPLSFLLRLCYDFLSKGWIVRISHVYREANRLADGLAN 283
Score = 45.1 bits (105), Expect(3) = 4e-21
Identities = 40/158 (25%), Positives = 64/158 (40%), Gaps = 6/158 (3%)
Frame = -2
Query: 987 FLWLCNHDXXXXXXXXXXXRVVDSAICEGCRGEEVTLDDLLRRCPKAIDLWLKLGLQNTL 808
FLWL + D+ +C+ C+G E T+ +LR CP +W +L ++ +
Sbjct: 9 FLWLVVQQVIITNVERYRRHLSDTRVCQICQGGEETILHVLRDCPAMAGIWSRLVPRDQI 68
Query: 807 TS--SLSVHKWLEINS*TDSISQFNNLPSSTLFAYACWTIWYYRNKRKFEPHSILPDHKS 634
+ S+ +W+ N + + + P T+F A W W +R F + D
Sbjct: 69 RQFFTASLLEWIYKN-----LRERGSWP--TVFVMAVWWGWKWRCGNIFGGNGKCRDRVK 121
Query: 633 FCLSKAGEFY*RGPDNKGTR---STRSRIISWV-PRQG 532
F A E KG S R++SWV P G
Sbjct: 122 FIKDLAEEVAIANAFVKGNEVRVSRVERLVSWVSPEDG 159
Score = 32.0 bits (71), Expect(3) = 4e-21
Identities = 13/18 (72%), Positives = 16/18 (88%)
Frame = -1
Query: 544 SPAGGFLKLNTDGASKGN 491
SP G++KLNTDGAS+GN
Sbjct: 155 SPEDGWVKLNTDGASRGN 172
>gb|AAF23831.1|AC007234_3 F1E22.12 [Arabidopsis thaliana]
Length = 1055
Score = 67.8 bits (164), Expect(3) = 1e-20
Identities = 43/108 (39%), Positives = 57/108 (52%)
Frame = -3
Query: 488 AGAGGLIRDERGNKVMGFYRHIGTTTNTIAELWAVRDGLILARDKNISNIVLEVDAEVVV 309
A AGG++RD G GF +IG + AELW V GL A +K + + LEVD+EV+V
Sbjct: 584 ASAGGVLRDCTGAWCGGFSLNIGRCSAPQAELWGVYYGLYFAWEKKVPRVELEVDSEVIV 643
Query: 308 YLLQQEPVPLHPSFNILCDCRSLLSIFQSVSIRHVHRVGNKCADFLAN 165
L+ HP ++ C L V I HV+R N+ AD LAN
Sbjct: 644 GFLKTGISDSHPLSFLVRLCHGFLQKDWLVRIVHVYREANRLADGLAN 691
Score = 49.7 bits (117), Expect(3) = 1e-20
Identities = 40/153 (26%), Positives = 63/153 (41%), Gaps = 5/153 (3%)
Frame = -2
Query: 987 FLWLCNHDXXXXXXXXXXXRVVDSAICEGCRGEEVTLDDLLRRCPKAIDLWLKLGLQNTL 808
FLWL + + S +C+ C+G ++ +LR CP + +W+++ Q
Sbjct: 412 FLWLVGNQAVMTEEERHRRHLSASNVCQVCKGGVESMLHVLRDCPAQLGIWVRVVPQRRQ 471
Query: 807 TS--SLSVHKWLEINS*TDSISQFNNLPSSTLFAYACWTIWYYRNKRKFEPHSILPDHKS 634
S S+ +WL N S ++P ST+FA W W +R F ++ D
Sbjct: 472 QGFFSKSLFEWLYDN--LGDRSGCEDIPWSTIFAVIIWWGWKWRCGNIFGENTKCRDRVK 529
Query: 633 FCLSKAGEFY*RGPDNKGTRSTRSRI---ISWV 544
F A E Y N T+ R+ I WV
Sbjct: 530 FVKEWAVEVYRAHSGNVLVGITQPRVERMIGWV 562
Score = 30.4 bits (67), Expect(3) = 1e-20
Identities = 12/18 (66%), Positives = 16/18 (88%)
Frame = -1
Query: 544 SPAGGFLKLNTDGASKGN 491
SP G++K+NTDGAS+GN
Sbjct: 563 SPCVGWVKVNTDGASRGN 580
>sp|P0C2F6.1|RNHX1_ARATH RecName: Full=Putative ribonuclease H protein At1g65750
Length = 620
Score = 67.8 bits (164), Expect(3) = 1e-20
Identities = 43/108 (39%), Positives = 57/108 (52%)
Frame = -3
Query: 488 AGAGGLIRDERGNKVMGFYRHIGTTTNTIAELWAVRDGLILARDKNISNIVLEVDAEVVV 309
A AGG++RD G GF +IG + AELW V GL A +K + + LEVD+EV+V
Sbjct: 475 ASAGGVLRDCTGAWCGGFSLNIGRCSAPQAELWGVYYGLYFAWEKKVPRVELEVDSEVIV 534
Query: 308 YLLQQEPVPLHPSFNILCDCRSLLSIFQSVSIRHVHRVGNKCADFLAN 165
L+ HP ++ C L V I HV+R N+ AD LAN
Sbjct: 535 GFLKTGISDSHPLSFLVRLCHGFLQKDWLVRIVHVYREANRLADGLAN 582
Score = 49.7 bits (117), Expect(3) = 1e-20
Identities = 40/153 (26%), Positives = 63/153 (41%), Gaps = 5/153 (3%)
Frame = -2
Query: 987 FLWLCNHDXXXXXXXXXXXRVVDSAICEGCRGEEVTLDDLLRRCPKAIDLWLKLGLQNTL 808
FLWL + + S +C+ C+G ++ +LR CP + +W+++ Q
Sbjct: 303 FLWLVGNQAVMTEEERHRRHLSASNVCQVCKGGVESMLHVLRDCPAQLGIWVRVVPQRRQ 362
Query: 807 TS--SLSVHKWLEINS*TDSISQFNNLPSSTLFAYACWTIWYYRNKRKFEPHSILPDHKS 634
S S+ +WL N S ++P ST+FA W W +R F ++ D
Sbjct: 363 QGFFSKSLFEWLYDN--LGDRSGCEDIPWSTIFAVIIWWGWKWRCGNIFGENTKCRDRVK 420
Query: 633 FCLSKAGEFY*RGPDNKGTRSTRSRI---ISWV 544
F A E Y N T+ R+ I WV
Sbjct: 421 FVKEWAVEVYRAHSGNVLVGITQPRVERMIGWV 453
Score = 30.4 bits (67), Expect(3) = 1e-20
Identities = 12/18 (66%), Positives = 16/18 (88%)
Frame = -1
Query: 544 SPAGGFLKLNTDGASKGN 491
SP G++K+NTDGAS+GN
Sbjct: 454 SPCVGWVKVNTDGASRGN 471
>gb|AAC26674.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 970
Score = 63.5 bits (153), Expect(4) = 3e-20
Identities = 43/127 (33%), Positives = 64/127 (50%)
Frame = -3
Query: 488 AGAGGLIRDERGNKVMGFYRHIGTTTNTIAELWAVRDGLILARDKNISNIVLEVDAEVVV 309
A A G I + +G + GF +IG+ +AELW GL++A DK + L +D+E+VV
Sbjct: 825 AAASGAILNLQGEWLGGFALNIGSCDAPLAELWGAYYGLLIAWDKGFRRVELNLDSELVV 884
Query: 308 YLLQQEPVPLHPSFNILCDCRSLLSIFQSVSIRHVHRVGNKCADFLANQGCNYANLDYVC 129
L HP ++ C+ + V + HV+R N+ AD LAN + L + C
Sbjct: 885 GFLSTGISKAHPLSFLVRLCQGFFTRDWLVRVSHVYREANRLADGLANYAF-FLPLGFHC 943
Query: 128 LFEPTPE 108
FE PE
Sbjct: 944 -FEICPE 949
Score = 45.4 bits (106), Expect(4) = 3e-20
Identities = 33/131 (25%), Positives = 47/131 (35%), Gaps = 5/131 (3%)
Frame = -2
Query: 987 FLWLCNHDXXXXXXXXXXXRVVDSAICEGCRGEEVTLDDLLRRCPKAIDLWLKLGLQNTL 808
F+WL +H + D A C C G + ++ +LR CP +W +L Q
Sbjct: 659 FIWLVSHMVIMTNVERVRRHLSDIATCSVCNGADESILHVLRDCPAMTPIWQRLLPQRRQ 718
Query: 807 TSSLSVHKWLEINS*TDSISQFNNLPSS-----TLFAYACWTIWYYRNKRKFEPHSILPD 643
S +WL F NL + TLF+ W W +R F + D
Sbjct: 719 NEFFSQFEWL-----------FTNLDPAKGDWPTLFSMGIWWAWKWRCGDVFGERKLCRD 767
Query: 642 HKSFCLSKAGE 610
F A E
Sbjct: 768 RLKFIKDIAEE 778
Score = 32.7 bits (73), Expect(4) = 3e-20
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 6/71 (8%)
Frame = -3
Query: 1178 LQKRIHAIPFSNL---ATRPDNTRWIGTNNGEFSSKSAWNLLLD--QEHTEDGNW-DWVW 1017
LQ+++ A+ ++ A D W GT NG+F+ +SA+ LL +E G++ +W
Sbjct: 589 LQEQLSAVAKESISADALLSDELSWKGTQNGDFTVRSAYELLKPEAEERPLIGSFLKQIW 648
Query: 1016 DVKAAPRIKTF 984
+ A R++ F
Sbjct: 649 KLVAPERVRVF 659
Score = 24.3 bits (51), Expect(4) = 3e-20
Identities = 9/18 (50%), Positives = 15/18 (83%)
Frame = -1
Query: 544 SPAGGFLKLNTDGASKGN 491
+P+ ++KL TDGAS+G+
Sbjct: 804 APSDRWVKLTTDGASRGH 821
>gb|AAC63844.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1231
Score = 66.6 bits (161), Expect(3) = 3e-17
Identities = 38/108 (35%), Positives = 58/108 (53%)
Frame = -3
Query: 488 AGAGGLIRDERGNKVMGFYRHIGTTTNTIAELWAVRDGLILARDKNISNIVLEVDAEVVV 309
A AGG IR+ +G + GF +IG+ +AELW GL++A DK + L++D ++VV
Sbjct: 1086 AAAGGAIRNGQGEWLGGFALNIGSCAAPLAELWGAYYGLLIAWDKGFRRVELDLDCKLVV 1145
Query: 308 YLLQQEPVPLHPSFNILCDCRSLLSIFQSVSIRHVHRVGNKCADFLAN 165
L HP ++ C+ + V + HV+R N+ AD LAN
Sbjct: 1146 GFLSTGVSNAHPLSFLVRLCQGFFTRDWLVRVSHVYREANRLADGLAN 1193
Score = 41.2 bits (95), Expect(3) = 3e-17
Identities = 34/128 (26%), Positives = 50/128 (39%), Gaps = 2/128 (1%)
Frame = -2
Query: 987 FLWLCNHDXXXXXXXXXXXRVVDSAICEGCRGEEVTLDDLLRRCPKAIDLWLKL--GLQN 814
F+WL + + + ++AIC C G E T+ +LR CP +W +L ++
Sbjct: 918 FIWLVSQNVIMTNVERVRRHLSENAICSVCNGAEETILHVLRDCPAMEPIWRRLLPLRRH 977
Query: 813 TLTSSLSVHKWLEINS*TDSISQFNNLPSSTLFAYACWTIWYYRNKRKFEPHSILPDHKS 634
S S+ +WL N D + TLF W W +R F I D
Sbjct: 978 HEFFSQSLLEWLFTN--MDPVKGI----WPTLFGMGIWWAWKWRCCDVFGERKICRDRLK 1031
Query: 633 FCLSKAGE 610
F A E
Sbjct: 1032 FIKDMAEE 1039
Score = 28.1 bits (61), Expect(3) = 3e-17
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = -1
Query: 541 PAGGFLKLNTDGASKGN 491
P+ G++K+ TDGAS+GN
Sbjct: 1066 PSDGWVKITTDGASRGN 1082
>emb|CCA65997.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1363
Score = 71.6 bits (174), Expect(3) = 4e-17
Identities = 59/169 (34%), Positives = 84/169 (49%), Gaps = 9/169 (5%)
Frame = -3
Query: 632 FAYQRLVS--FTNVDQIIRAQDLHG----LELFHGFPGRGFSK--TEH*WSFQG*FAGAG 477
F Y R+V+ FTN+ + + + G + L P +GF K T+ W AG G
Sbjct: 1166 FTYNRVVADFFTNI-RAFQVNNTQGNGSKVVLRWKPPHQGFLKLNTDGAWKADWENAGIG 1224
Query: 476 GLIRDERGNKVMGFYRHIGTTTNTIAELWAVRDGLILARDKNISNIVLEVDAEVVVYLLQ 297
G+ RD GN +GF + + + AEL A+R+GL +A D N + +E DA+ VV LL
Sbjct: 1225 GVFRDAVGNWELGFAKRVDAGSPEAAELMAIREGLQVAWDCNYHKLEVECDAKGVVQLLA 1284
Query: 296 QE-PVPLHPSFNILCDCRSLLSIFQSVSIRHVHRVGNKCADFLANQGCN 153
+ HP I+ D LL+ SV H+ R GNK A LA + N
Sbjct: 1285 KPLEAENHPLGVIVMDICILLTRHWSVEFLHIKREGNKVAHCLAAEAVN 1333
Score = 35.4 bits (80), Expect(3) = 4e-17
Identities = 17/53 (32%), Positives = 28/53 (52%)
Frame = -3
Query: 1181 ELQKRIHAIPFSNLATRPDNTRWIGTNNGEFSSKSAWNLLLDQEHTEDGNWDW 1023
++ K+I IP ++++ D+ W NG FS KSA+ L+ +E G W
Sbjct: 986 DILKQIKEIPLASMSEVEDDFTWNFEKNGTFSVKSAYYLINRREEETGGKGSW 1038
Score = 28.5 bits (62), Expect(3) = 4e-17
Identities = 23/87 (26%), Positives = 36/87 (41%), Gaps = 5/87 (5%)
Frame = -2
Query: 909 CEGCRGEEVTLDDLLRRCPKAIDLWLKLGLQN-----TLTSSLSVHKWLEINS*TDSISQ 745
C C + L R C A +W+++ + L +L +W++ N ++Q
Sbjct: 1079 CVACDHPIEDMIHLFRDCCVASSVWIEILKHHKPNNQNLFFNLEWEEWIDFN-----LNQ 1133
Query: 744 FNNLPSSTLFAYACWTIWYYRNKRKFE 664
+ T F A W IW RNK FE
Sbjct: 1134 HDYWV--TKFTTAFWHIWCSRNKTVFE 1158
>gb|EOY19161.1| Polynucleotidyl transferase, putative [Theobroma cacao]
Length = 419
Score = 71.2 bits (173), Expect(3) = 6e-17
Identities = 35/106 (33%), Positives = 59/106 (55%)
Frame = -3
Query: 488 AGAGGLIRDERGNKVMGFYRHIGTTTNTIAELWAVRDGLILARDKNISNIVLEVDAEVVV 309
A +GG+IRDE GN + GF + IG T + AE W + GL L ++ + +E+D+ + +
Sbjct: 276 AASGGVIRDEYGNWIAGFCQKIGITFSLTAEPWGIYQGLTLCWNRGLRKFCVEIDSMLAL 335
Query: 308 YLLQQEPVPLHPSFNILCDCRSLLSIFQSVSIRHVHRVGNKCADFL 171
+ + L P+ +L + LL V+I HVHR ++C D++
Sbjct: 336 QKIYSQSSMLDPNAQLLRRIKELLQQSWDVTISHVHREADQCTDWM 381
Score = 37.7 bits (86), Expect(3) = 6e-17
Identities = 27/115 (23%), Positives = 46/115 (40%), Gaps = 2/115 (1%)
Frame = -2
Query: 984 LWLCNHDXXXXXXXXXXXRVVDSAICEGCRGEEVTLDDLLRRCPKAIDLWLKL--GLQNT 811
+W H+ + +A C TL LR C K+ LWL+L + ++
Sbjct: 108 IWRILHEALPTSEWLLKRHLRSTAFYFRCEAPVETLVHALRDCGKSKLLWLQLRPNIHSS 167
Query: 810 LTSSLSVHKWLEINS*TDSISQFNNLPSSTLFAYACWTIWYYRNKRKFEPHSILP 646
S + W+ N +P + +F +A W +W++RN F+ I P
Sbjct: 168 DFFSEELKPWVLKN--LACKDPVEGIPWAIIFIHAIWLLWFWRNMNLFDKSFIWP 220
Score = 26.2 bits (56), Expect(3) = 6e-17
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = -1
Query: 541 PAGGFLKLNTDGASKG 494
P G++KLN DG++KG
Sbjct: 256 PKNGYVKLNVDGSAKG 271
>emb|CAB78008.1| putative protein [Arabidopsis thaliana] gi|7321072|emb|CAB82119.1|
putative protein [Arabidopsis thaliana]
Length = 947
Score = 48.9 bits (115), Expect(4) = 7e-17
Identities = 26/63 (41%), Positives = 38/63 (60%)
Frame = -3
Query: 488 AGAGGLIRDERGNKVMGFYRHIGTTTNTIAELWAVRDGLILARDKNISNIVLEVDAEVVV 309
A GG++RD G+ GF IG + +AELW V GL +A ++ + + LEVD+E+VV
Sbjct: 864 ATTGGVLRDGIGHWCGGFALDIGVCSAPLAELWGVYYGLYMAWERRFTRVELEVDSELVV 923
Query: 308 YLL 300
L
Sbjct: 924 GFL 926
Score = 43.5 bits (101), Expect(4) = 7e-17
Identities = 34/135 (25%), Positives = 58/135 (42%), Gaps = 5/135 (3%)
Frame = -2
Query: 921 DSAICEGCRGEEVTLDDLLRRCPKAIDLWLKL-GLQNTLT-SSLSVHKWLEINS*TDSIS 748
D+++C+ C+G + T+ +L+ CP +W +L +Q + + S+ WL +N +
Sbjct: 714 DTSVCQVCKGGDETILHVLKDCPSIAGIWRRLVQVQRSYDFFNGSLFGWLYVNLGMKNAE 773
Query: 747 QFNNLPSSTLFAYACWTIWYYRNKRKFEPHSILPDHKSFCLSKAGEF---Y*RGPDNKGT 577
+TLFA W W +R F D F A E + N G
Sbjct: 774 --TGYAWATLFAIVVWWSWKWRCGYVFGEVGKCRDRVKFFRDLAAEVSHAHAIHSQNGGL 831
Query: 576 RSTRSRIISWVPRQG 532
R+ R+++W P G
Sbjct: 832 RTRVERLVAWKPPDG 846
Score = 31.2 bits (69), Expect(4) = 7e-17
Identities = 13/18 (72%), Positives = 16/18 (88%)
Frame = -1
Query: 541 PAGGFLKLNTDGASKGNL 488
P G ++KLNTDGAS+GNL
Sbjct: 844 PDGEWVKLNTDGASRGNL 861
Score = 30.4 bits (67), Expect(4) = 7e-17
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Frame = -3
Query: 1160 AIPFSNLATRPDNTRWIGTNNGEFSSKSAWNLLLDQEHTEDGN----WDWVWDVKAAPRI 993
A+ ++ D W + +G F+ KSA+ LL + +H N +D +W V A R+
Sbjct: 647 AVVVDSVTGARDRLSWGYSADGVFTVKSAYRLLTE-DHDPRPNMAAFFDRLWRVVALERV 705
Query: 992 KTF 984
KTF
Sbjct: 706 KTF 708
>gb|EOY34747.1| Uncharacterized protein TCM_042327 [Theobroma cacao]
Length = 1014
Score = 90.1 bits (222), Expect(2) = 5e-16
Identities = 49/119 (41%), Positives = 70/119 (58%)
Frame = -3
Query: 488 AGAGGLIRDERGNKVMGFYRHIGTTTNTIAELWAVRDGLILARDKNISNIVLEVDAEVVV 309
A GGL+RD G V GF +IG + + AEL A+ GL+L +D+NI + +E+DA VV+
Sbjct: 873 AATGGLLRDHTGTLVFGFSENIGPSNSLQAELRALLRGLLLCKDRNIEKLWIEMDALVVI 932
Query: 308 YLLQQEPVPLHPSFNILCDCRSLLSIFQSVSIRHVHRVGNKCADFLANQGCNYANLDYV 132
++QQ H +L R LS F S I H+ R GN+ ADFL+N+G + NL +
Sbjct: 933 QMIQQSKKGSHDIRYLLASIRKCLSFF-SFRISHIFREGNQAADFLSNKGHTHQNLQVI 990
Score = 21.9 bits (45), Expect(2) = 5e-16
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = -1
Query: 541 PAGGFLKLNTDGASKGN 491
P G KLN DG+S+ N
Sbjct: 854 PVTGEYKLNVDGSSRHN 870
>gb|EMJ08167.1| hypothetical protein PRUPE_ppb019197mg [Prunus persica]
Length = 363
Score = 74.7 bits (182), Expect(3) = 8e-16
Identities = 42/112 (37%), Positives = 63/112 (56%), Gaps = 1/112 (0%)
Frame = -3
Query: 485 GAGGLIRDERGNKVMGFYRHIGTTTNTIAELWAVRDGLILARDKNISNIVLEVDAEVVVY 306
GAGG+IRD G+ + GF ++G ELW + GL L K ++ + +E+D+ V
Sbjct: 239 GAGGIIRDSFGDWMGGFAVNLGIGQTLDDELWGLFFGLKLVAAKGVARLSIEMDSMTDVQ 298
Query: 305 LLQQE-PVPLHPSFNILCDCRSLLSIFQSVSIRHVHRVGNKCADFLANQGCN 153
L++Q P LHP ++ C +L+S F+ V + HV+R N AD LAN N
Sbjct: 299 LIKQHVPSCLHPCTGVIASCVALISKFEFVELTHVYRERNAAADCLANWSLN 350
Score = 32.3 bits (72), Expect(3) = 8e-16
Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
Frame = -2
Query: 741 NNLPSSTLFAYACWT-IWYYRNKRKFEPHSILPDH-KSFCLSKAGEFY*RGPDNKGTRST 568
+NL S +++ W IW +RN R F + LP H K S E+ P++ R+
Sbjct: 149 SNLCSKSVYDLQPWLFIWKWRNSRVFNVEAELPFHPKRIIASAVSEWLQTCPNSISKRTQ 208
Query: 567 RSRIISW-VPRQGVF 526
+++W P GVF
Sbjct: 209 VQIMLAWEPPMNGVF 223
Score = 24.3 bits (51), Expect(3) = 8e-16
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = -1
Query: 541 PAGGFLKLNTDGASKGNL 488
P G KLN DG+ KG +
Sbjct: 218 PMNGVFKLNVDGSRKGGI 235
>gb|EOY02505.1| RNA-binding (RRM/RBD/RNP motifs) family protein isoform 1
[Theobroma cacao] gi|508710609|gb|EOY02506.1|
RNA-binding (RRM/RBD/RNP motifs) family protein isoform
1 [Theobroma cacao]
Length = 344
Score = 89.4 bits (220), Expect(2) = 2e-15
Identities = 52/134 (38%), Positives = 80/134 (59%)
Frame = -3
Query: 488 AGAGGLIRDERGNKVMGFYRHIGTTTNTIAELWAVRDGLILARDKNISNIVLEVDAEVVV 309
AGAGG+IR+++G +G+ R +G T+T AE W +RDGL LA + + +++++VD +VV+
Sbjct: 86 AGAGGIIRNDQGEWNVGYSRKLGQATSTCAEHWGLRDGLQLAVKRGLFDVIIKVDLQVVL 145
Query: 308 YLLQQEPVPLHPSFNILCDCRSLLSIFQSVSIRHVHRVGNKCADFLANQGCNYANLDYVC 129
L+ +E V H I+ +CRSLL + ++R N CAD LA G D+V
Sbjct: 146 DLICKEAVDSHTLGPIIKECRSLLEQIPNHRFCQINRDSNCCADHLARMGATMTK-DFV- 203
Query: 128 LFEPTPELGVLLRF 87
+FE P+ LL F
Sbjct: 204 IFEFPPDCIKLLLF 217
Score = 20.8 bits (42), Expect(2) = 2e-15
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = -1
Query: 541 PAGGFLKLNTDGAS 500
P GF KLN+ G+S
Sbjct: 66 PPRGFFKLNSGGSS 79
>ref|XP_002309989.1| predicted protein [Populus trichocarpa]
Length = 245
Score = 84.7 bits (208), Expect(2) = 6e-15
Identities = 57/141 (40%), Positives = 78/141 (55%), Gaps = 2/141 (1%)
Frame = -3
Query: 488 AGAGGLIRDERGNKVMGFYRHIGTTTNTIAELWAVRDGLILARDKNISNIVLEVDAEVVV 309
AGAGG+IRD G + GF R+IG ++ AELWAV GL LA D+ + LE D++VVV
Sbjct: 99 AGAGGVIRDHLGAWIGGFARNIGICSSVNAELWAVYVGLQLAWDRGFRKVDLESDSKVVV 158
Query: 308 YLLQQEPVPLHPSFNILCDCRSLLSIFQSVSIRHVHRVGNKCADFLANQGCNYANLD--Y 135
L+ + V + ++NI+ + +L V+ HV+R N AD+LAN G LD
Sbjct: 159 GLINGDSVRVDRNYNIIMQIKGMLGRDWEVTTYHVYREANCVADWLANYGLTRDLLDRGS 218
Query: 134 VCLFEPTPELGVLLRFGC*GS 72
L EP L LL + GS
Sbjct: 219 DVLEEPPSGLYPLLYYDLIGS 239
Score = 23.9 bits (50), Expect(2) = 6e-15
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = -1
Query: 526 LKLNTDGASKGN 491
+KLN DG SKGN
Sbjct: 84 IKLNVDGCSKGN 95
>ref|XP_002314708.1| predicted protein [Populus trichocarpa]
Length = 245
Score = 84.0 bits (206), Expect(2) = 1e-14
Identities = 49/117 (41%), Positives = 69/117 (58%)
Frame = -3
Query: 488 AGAGGLIRDERGNKVMGFYRHIGTTTNTIAELWAVRDGLILARDKNISNIVLEVDAEVVV 309
AGAGG+IRD G + GF R+IG ++ AELWAV GL LA D+ + LE D++VVV
Sbjct: 99 AGAGGVIRDHLGAWIGGFARNIGICSSVNAELWAVYVGLQLAWDRGFRKVDLESDSKVVV 158
Query: 308 YLLQQEPVPLHPSFNILCDCRSLLSIFQSVSIRHVHRVGNKCADFLANQGCNYANLD 138
L+ + V + ++NI+ + +L V+ HV+R N AD+LAN G LD
Sbjct: 159 GLINGDSVRVDRNYNIIMQIKGMLGRNWEVTTYHVYREANCVADWLANYGLTRDLLD 215
Score = 23.9 bits (50), Expect(2) = 1e-14
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = -1
Query: 526 LKLNTDGASKGN 491
+KLN DG SKGN
Sbjct: 84 IKLNVDGCSKGN 95
>gb|EOY14356.1| Uncharacterized protein TCM_033752 [Theobroma cacao]
Length = 2251
Score = 84.3 bits (207), Expect(2) = 8e-14
Identities = 50/116 (43%), Positives = 66/116 (56%)
Frame = -3
Query: 488 AGAGGLIRDERGNKVMGFYRHIGTTTNTIAELWAVRDGLILARDKNISNIVLEVDAEVVV 309
A GG++RD G V GF ++GT + AEL A+ GLIL RD NI + +E+DA V+
Sbjct: 2110 AAGGGILRDHAGEMVFGFSENLGTQNSLQAELLALYRGLILCRDYNIRRLWIEMDAISVI 2169
Query: 308 YLLQQEPVPLHPSFNILCDCRSLLSIFQSVSIRHVHRVGNKCADFLANQGCNYANL 141
LLQ H ++ R LLS F S H+ R GN+ ADFLAN+G + NL
Sbjct: 2170 RLLQGNHRGPHAIRYLMVSLRQLLSHF-SFRFSHIFREGNQAADFLANRGHEHQNL 2224
Score = 20.4 bits (41), Expect(2) = 8e-14
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -1
Query: 541 PAGGFLKLNTDGASK 497
P+ G KLN DG++K
Sbjct: 2091 PSLGEFKLNVDGSAK 2105
>gb|AAF97302.1|AC007843_5 Hypothetical protein [Arabidopsis thaliana]
gi|55978717|gb|AAV68820.1| hypothetical protein
AT1G17390 [Arabidopsis thaliana]
Length = 272
Score = 75.5 bits (184), Expect(2) = 8e-14
Identities = 48/128 (37%), Positives = 72/128 (56%)
Frame = -3
Query: 488 AGAGGLIRDERGNKVMGFYRHIGTTTNTIAELWAVRDGLILARDKNISNIVLEVDAEVVV 309
A AGG++RD GN GF +IG + +AELW GL +A ++ ++ + +E+D+E+VV
Sbjct: 127 ATAGGVVRDGDGNWCYGFSLNIGICSAPLAELWGAYYGLNIAWERGVTQLEMEIDSEMVV 186
Query: 308 YLLQQEPVPLHPSFNILCDCRSLLSIFQSVSIRHVHRVGNKCADFLANQGCNYANLDYVC 129
L+ HP ++ C LLS SV I HV+R N+ AD LAN + L +
Sbjct: 187 GFLRTGIDDSHPLSFLVRLCHGLLSKDWSVRISHVYREANRLADGLANYAF-FLPLGF-H 244
Query: 128 LFEPTPEL 105
LF TP++
Sbjct: 245 LFNSTPDI 252
Score = 29.3 bits (64), Expect(2) = 8e-14
Identities = 12/17 (70%), Positives = 14/17 (82%)
Frame = -1
Query: 541 PAGGFLKLNTDGASKGN 491
P G+ KLNTDGAS+GN
Sbjct: 107 PRVGWFKLNTDGASRGN 123