BLASTX nr result
ID: Catharanthus23_contig00023743
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Catharanthus23_contig00023743
(997 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|EOX98014.1| Ribonuclease H protein [Theobroma cacao] 57 5e-12
ref|XP_006490008.1| PREDICTED: uncharacterized protein LOC102624... 59 2e-07
ref|XP_006493638.1| PREDICTED: putative ribonuclease H protein A... 61 6e-07
gb|EOY32894.1| Uncharacterized protein TCM_040908 [Theobroma cacao] 61 6e-07
gb|EOY02864.1| Ribonuclease H protein [Theobroma cacao] 61 8e-07
gb|EOY02505.1| RNA-binding (RRM/RBD/RNP motifs) family protein i... 61 8e-07
ref|XP_003612606.1| Replication protein A1-like protein [Medicag... 60 1e-06
emb|CAH66131.1| OSIGBa0135L04.5 [Oryza sativa Indica Group] 60 2e-06
ref|XP_006493637.1| PREDICTED: putative ribonuclease H protein A... 59 2e-06
gb|ABO80459.1| RNA-directed DNA polymerase (Reverse transcriptas... 59 2e-06
gb|ABW81175.1| non-LTR retrotransposon transposase [Arabidopsis ... 59 4e-06
gb|EEE63169.1| hypothetical protein OsJ_17978 [Oryza sativa Japo... 57 4e-06
gb|EEC72938.1| hypothetical protein OsI_06800 [Oryza sativa Indi... 58 5e-06
emb|CCA66009.1| hypothetical protein [Beta vulgaris subsp. vulga... 58 7e-06
gb|EEE67720.1| hypothetical protein OsJ_25400 [Oryza sativa Japo... 55 7e-06
gb|EEC82591.1| hypothetical protein OsI_27147 [Oryza sativa Indi... 55 7e-06
gb|EMJ04543.1| hypothetical protein PRUPE_ppa020282mg [Prunus pe... 57 9e-06
>gb|EOX98014.1| Ribonuclease H protein [Theobroma cacao]
Length = 528
Score = 57.0 bits (136), Expect(2) = 5e-12
Identities = 29/63 (46%), Positives = 37/63 (58%)
Frame = +3
Query: 75 WQMVWKTRCNQRVKLFLWLSLHNRLPTMNLLQ*RRISDSSACHLCPIEDEMVEHVLRSCP 254
WQ WK + +QRV+ FL+ LH RL T R+++ S C C +EDE V HVLR C
Sbjct: 109 WQGAWKWQGSQRVRTFLFQCLHGRLLTNRKRLHRQLTADSLCPQCRMEDETVTHVLRDCM 168
Query: 255 QAT 263
AT
Sbjct: 169 VAT 171
Score = 41.2 bits (95), Expect(2) = 5e-12
Identities = 33/143 (23%), Positives = 56/143 (39%), Gaps = 17/143 (11%)
Frame = +1
Query: 376 PWSLEDLVSLCLLGLWMFRNNMIFQPGSHNRKPKDESLQRAFEFTVIKSPSPQFYQYIPS 555
PWS+ + L LW +RN ++F + + + ++ T+ S
Sbjct: 183 PWSI--VFRLACWYLWKWRNGVVFDVAFNPTRKRISMIKSMATATIAPSAD--------- 231
Query: 556 *FDGLHR*RQDANSTRMDLPYPI-----------------QARGGGLISNHKGEWIVGFS 684
FDG+ R+ ++ P +A GG+ N +G+W GF
Sbjct: 232 -FDGVQVERRKKEEVLIEWRAPQVGWVCLNTDGAYKRSIEEASAGGVKRNAEGDWQAGFV 290
Query: 685 RYFGIATSVKAELWTLRKGLELA 753
G ++ +AELW + GL LA
Sbjct: 291 AKLGKCSAYRAELWGILHGLRLA 313
>ref|XP_006490008.1| PREDICTED: uncharacterized protein LOC102624085 [Citrus sinensis]
Length = 1635
Score = 58.5 bits (140), Expect(2) = 2e-07
Identities = 40/122 (32%), Positives = 60/122 (49%), Gaps = 8/122 (6%)
Frame = +3
Query: 3 NENFSNQIAHEKLSLGDTEPQLSRWQMVWKTRCNQRVKLFLWLSLHNRLPTMNLLQ*RRI 182
N NFS + A+E L S W +VW + +++FLWL LH RL T L R +
Sbjct: 1463 NGNFSVKSAYELLDDPIGNGDHSFWCLVWSWKGPHSIRVFLWLLLHGRLKTKKELNRRHL 1522
Query: 183 SDSSACHLC--PIEDEMVEHVLRSCPQAT*LGPIW------DFHNNFLTSPILVLLRIHL 338
DS+ C C P+ED + H LR C A +W ++ ++F P+ L+++L
Sbjct: 1523 IDSTQCDRCGGPVED--ILHTLRDCVTAR---RVWSHLLPNNYPHSFFLCPLSDWLQMNL 1577
Query: 339 KR 344
R
Sbjct: 1578 MR 1579
Score = 23.9 bits (50), Expect(2) = 2e-07
Identities = 11/40 (27%), Positives = 21/40 (52%)
Frame = +1
Query: 340 NEVQSQIKTPRQPWSLEDLVSLCLLGLWMFRNNMIFQPGS 459
N ++ + T ++ W + + + LW +RNN +F GS
Sbjct: 1576 NLMRKKNNTSQEYWRV--CFGVAVWRLWFWRNNFLFNHGS 1613
>ref|XP_006493638.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus
sinensis]
Length = 360
Score = 61.2 bits (147), Expect = 6e-07
Identities = 33/86 (38%), Positives = 46/86 (53%)
Frame = +3
Query: 3 NENFSNQIAHEKLSLGDTEPQLSRWQMVWKTRCNQRVKLFLWLSLHNRLPTMNLLQ*RRI 182
+E+F+ A+ LS + + S W+++W+ R QR+K FLW+ NRL T L R I
Sbjct: 261 SEDFTTNSAYRALSKMEVHNEESFWRILWQWRGPQRIKTFLWVVGQNRLKTKAELFRRHI 320
Query: 183 SDSSACHLCPIEDEMVEHVLRSCPQA 260
D +C C E HVLR CP A
Sbjct: 321 VDDMSCAKCGCVVENTLHVLRDCPSA 346
>gb|EOY32894.1| Uncharacterized protein TCM_040908 [Theobroma cacao]
Length = 106
Score = 61.2 bits (147), Expect = 6e-07
Identities = 34/99 (34%), Positives = 54/99 (54%)
Frame = +3
Query: 12 FSNQIAHEKLSLGDTEPQLSRWQMVWKTRCNQRVKLFLWLSLHNRLPTMNLLQ*RRISDS 191
F+ + A+E + L + P W+ VWK + +V++F+W LH LPT++ L R +S S
Sbjct: 8 FTVKFAYE-MQLENHPPHTICWRKVWKLHASNKVRMFIWRLLHESLPTVSWLANRGLSTS 66
Query: 192 SACHLCPIEDEMVEHVLRSCPQAT*LGPIWDFHNNFLTS 308
SA C +E + H LR C + + IW N+ LT+
Sbjct: 67 SASSFCGAHEENLVHALRDCNR---VKNIWLAFNSGLTN 102
>gb|EOY02864.1| Ribonuclease H protein [Theobroma cacao]
Length = 660
Score = 60.8 bits (146), Expect = 8e-07
Identities = 41/117 (35%), Positives = 60/117 (51%), Gaps = 6/117 (5%)
Frame = +3
Query: 75 WQMVWKTRCNQRVKLFLWLSLHNRLPTMNLLQ*RRISDSSACHLCPIEDEMVEHVLRSCP 254
WQ WK + +QRV+ FL+ LH RL T R+++ S C C +EDE V HVLR C
Sbjct: 325 WQGAWKWQGSQRVRTFLFQCLHGRLLTNRERLHRQLTTDSLCPQCRMEDETVTHVLRDCM 384
Query: 255 QAT*LGPIW------DFHNNFLTSPILVLLRIHLKRGAISNQNTKAAVVLGRSCFLM 407
AT +W N+F T P+ L +L++ + N +VV G +C+ +
Sbjct: 385 VAT---SLWVKIIPQHEQNDFFTFPLREWLVSNLQKQQLILGN-PWSVVFGLACWCL 437
>gb|EOY02505.1| RNA-binding (RRM/RBD/RNP motifs) family protein isoform 1
[Theobroma cacao] gi|508710609|gb|EOY02506.1|
RNA-binding (RRM/RBD/RNP motifs) family protein isoform
1 [Theobroma cacao]
Length = 344
Score = 60.8 bits (146), Expect = 8e-07
Identities = 37/107 (34%), Positives = 49/107 (45%), Gaps = 31/107 (28%)
Frame = +1
Query: 619 PIQARGGGLISNHKGEWIVGFSRYFGIATSVKAELWTLRKGLELAIQHHI---------- 768
P +A GG+I N +GEW VG+SR G ATS AE W LR GL+LA++ +
Sbjct: 83 PGKAGAGGIIRNDQGEWNVGYSRKLGQATSTCAEHWGLRDGLQLAVKRGLFDVIIKVDLQ 142
Query: 769 ---------------------TLLSLIDQLPGSRLAHIYREENACAD 846
SL++Q+P R I R+ N CAD
Sbjct: 143 VVLDLICKEAVDSHTLGPIIKECRSLLEQIPNHRFCQINRDSNCCAD 189
>ref|XP_003612606.1| Replication protein A1-like protein [Medicago truncatula]
gi|355513941|gb|AES95564.1| Replication protein A1-like
protein [Medicago truncatula]
Length = 708
Score = 60.1 bits (144), Expect = 1e-06
Identities = 30/96 (31%), Positives = 48/96 (50%)
Frame = +3
Query: 24 IAHEKLSLGDTEPQLSRWQMVWKTRCNQRVKLFLWLSLHNRLPTMNLLQ*RRISDSSACH 203
+ K + T P W +WK + +++K LWL+ HN + T++LL IS S+ C+
Sbjct: 2 LTRTKPIVSSTSPHSWSWIWIWKLKLLEKIKFILWLACHNSVHTISLLNHGNISHSTVCN 61
Query: 204 LCPIEDEMVEHVLRSCPQAT*LGPIWDFHNNFLTSP 311
C I +E H +R C + P+W H + T P
Sbjct: 62 RCGIHNETFLHCVRDCIHSK---PLW--HQSGFTHP 92
>emb|CAH66131.1| OSIGBa0135L04.5 [Oryza sativa Indica Group]
Length = 611
Score = 59.7 bits (143), Expect = 2e-06
Identities = 30/80 (37%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Frame = +3
Query: 48 GDTEPQLSR-WQMVWKTRCNQRVKLFLWLSLHNRLPTMNLLQ*RRISDSSACHLCPIEDE 224
G +E + S+ W +VWK Q+VK+F W + N L TM R++ + C +C +E E
Sbjct: 272 GSSEAETSKAWNLVWKCNVPQKVKVFTWRAATNSLATMENKNKRKLEATGTCGICGVEAE 331
Query: 225 MVEHVLRSCPQAT*LGPIWD 284
V H L CPQA +WD
Sbjct: 332 DVAHALCRCPQAK---KMWD 348
>ref|XP_006493637.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus
sinensis]
Length = 246
Score = 59.3 bits (142), Expect = 2e-06
Identities = 32/86 (37%), Positives = 45/86 (52%)
Frame = +3
Query: 3 NENFSNQIAHEKLSLGDTEPQLSRWQMVWKTRCNQRVKLFLWLSLHNRLPTMNLLQ*RRI 182
+E+F+ A+ LS + + S W+++W+ R Q +K FLW+ NRL T L R I
Sbjct: 147 SEDFTTNSAYRALSKMEVHNEESFWRILWQWRGPQHIKTFLWVVGQNRLKTKAELFRRHI 206
Query: 183 SDSSACHLCPIEDEMVEHVLRSCPQA 260
D +C C E HVLR CP A
Sbjct: 207 VDDMSCAKCGCVVENTLHVLRDCPSA 232
>gb|ABO80459.1| RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H
[Medicago truncatula]
Length = 869
Score = 59.3 bits (142), Expect = 2e-06
Identities = 26/72 (36%), Positives = 39/72 (54%)
Frame = +3
Query: 39 LSLGDTEPQLSRWQMVWKTRCNQRVKLFLWLSLHNRLPTMNLLQ*RRISDSSACHLCPIE 218
LSL + W + K + +++ K +WL+ H+ LPT LL R+I S+ C C +
Sbjct: 539 LSLSGNDNNTHSWSWILKKKISEKYKFLIWLACHDSLPTAALLHHRQIIASATCARCGVS 598
Query: 219 DEMVEHVLRSCP 254
DE V H +R CP
Sbjct: 599 DESVFHCIRDCP 610
>gb|ABW81175.1| non-LTR retrotransposon transposase [Arabidopsis cebennensis]
Length = 799
Score = 58.5 bits (140), Expect = 4e-06
Identities = 32/83 (38%), Positives = 46/83 (55%), Gaps = 2/83 (2%)
Frame = +3
Query: 12 FSNQIAHEKLSLGDT-EPQLSR-WQMVWKTRCNQRVKLFLWLSLHNRLPTMNLLQ*RRIS 185
F+ + A+ L +T LSR + VWK +RVK+FLWL +H + T Q R +S
Sbjct: 444 FTVKSAYSSLMKDNTPRSDLSRMYDRVWKVIAPERVKIFLWLGVHQVIMTNMERQRRHLS 503
Query: 186 DSSACHLCPIEDEMVEHVLRSCP 254
D+ C +C DE + H+LR CP
Sbjct: 504 DTGICQVCKGGDETIIHILRDCP 526
>gb|EEE63169.1| hypothetical protein OsJ_17978 [Oryza sativa Japonica Group]
Length = 565
Score = 57.4 bits (137), Expect(2) = 4e-06
Identities = 26/62 (41%), Positives = 34/62 (54%)
Frame = +3
Query: 75 WQMVWKTRCNQRVKLFLWLSLHNRLPTMNLLQ*RRISDSSACHLCPIEDEMVEHVLRSCP 254
W ++WK R +VKLF WL + NRL T L + I + C +C EDE H+ SCP
Sbjct: 401 WDLIWKCRAPLKVKLFAWLLVRNRLSTKENLLKKTIVQEAICDICNQEDETANHMCFSCP 460
Query: 255 QA 260
A
Sbjct: 461 FA 462
Score = 20.8 bits (42), Expect(2) = 4e-06
Identities = 7/30 (23%), Positives = 16/30 (53%)
Frame = +1
Query: 361 KTPRQPWSLEDLVSLCLLGLWMFRNNMIFQ 450
+ P W + LC+ +W R++++F+
Sbjct: 489 QVPALHWQV--FFQLCMWAIWNHRHDVVFR 516
>gb|EEC72938.1| hypothetical protein OsI_06800 [Oryza sativa Indica Group]
Length = 556
Score = 58.2 bits (139), Expect = 5e-06
Identities = 24/62 (38%), Positives = 35/62 (56%)
Frame = +3
Query: 75 WQMVWKTRCNQRVKLFLWLSLHNRLPTMNLLQ*RRISDSSACHLCPIEDEMVEHVLRSCP 254
W +WK Q+VK+F W ++ N LPT+ + R++ S C +C +E E V H L CP
Sbjct: 448 WNALWKCNAPQKVKIFAWRAITNSLPTLENKKKRKLEVSDICTICGVESEYVVHALFRCP 507
Query: 255 QA 260
A
Sbjct: 508 HA 509
>emb|CCA66009.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1378
Score = 57.8 bits (138), Expect = 7e-06
Identities = 25/63 (39%), Positives = 38/63 (60%)
Frame = +3
Query: 72 RWQMVWKTRCNQRVKLFLWLSLHNRLPTMNLLQ*RRISDSSACHLCPIEDEMVEHVLRSC 251
+W VWK QRV+ F+WL++ +RL T + RR++D C +C +E +H+LR C
Sbjct: 1043 KWSAVWKIPTPQRVRFFIWLAIQDRLMTNSNRFLRRLTDDPRCLVCGEVEENTDHILRRC 1102
Query: 252 PQA 260
P A
Sbjct: 1103 PVA 1105
>gb|EEE67720.1| hypothetical protein OsJ_25400 [Oryza sativa Japonica Group]
Length = 391
Score = 55.1 bits (131), Expect(2) = 7e-06
Identities = 33/111 (29%), Positives = 48/111 (43%)
Frame = +3
Query: 69 SRWQMVWKTRCNQRVKLFLWLSLHNRLPTMNLLQ*RRISDSSACHLCPIEDEMVEHVLRS 248
S W+ VWK + RV+ F WL +RLP L+ + I+ S C +C I E EH+
Sbjct: 223 SNWKFVWKNKAPPRVQFFAWLLAKDRLPMRVNLKKKNITPSDVCEICKIAPETAEHLFLH 282
Query: 249 CPQAT*LGPIWDFHNNFLTSPILVLLRIHLKRGAISNQNTKAAVVLGRSCF 401
C A WD + P + L + I ++ K +L CF
Sbjct: 283 CSVAK---AFWDLTHANPNIPSMKALNLIQPPSCIPSEQYKCFYLL---CF 327
Score = 22.3 bits (46), Expect(2) = 7e-06
Identities = 7/16 (43%), Positives = 10/16 (62%)
Frame = +1
Query: 403 LCLLGLWMFRNNMIFQ 450
LC +W RN ++FQ
Sbjct: 325 LCFWRIWKHRNEVVFQ 340
>gb|EEC82591.1| hypothetical protein OsI_27147 [Oryza sativa Indica Group]
Length = 253
Score = 55.1 bits (131), Expect(2) = 7e-06
Identities = 33/111 (29%), Positives = 48/111 (43%)
Frame = +3
Query: 69 SRWQMVWKTRCNQRVKLFLWLSLHNRLPTMNLLQ*RRISDSSACHLCPIEDEMVEHVLRS 248
S W+ VWK + RV+ F WL +RLP L+ + I+ S C +C I E EH+
Sbjct: 85 SNWKFVWKNKAPPRVQFFAWLLAKDRLPMRVNLKKKNITPSDVCEICKIAPETAEHLFLH 144
Query: 249 CPQAT*LGPIWDFHNNFLTSPILVLLRIHLKRGAISNQNTKAAVVLGRSCF 401
C A WD + P + L + I ++ K +L CF
Sbjct: 145 CSVAK---AFWDLTHANPNIPSMKALNLIQPPSCIPSEQYKCFYLL---CF 189
Score = 22.3 bits (46), Expect(2) = 7e-06
Identities = 7/16 (43%), Positives = 10/16 (62%)
Frame = +1
Query: 403 LCLLGLWMFRNNMIFQ 450
LC +W RN ++FQ
Sbjct: 187 LCFWRIWKHRNEVVFQ 202
>gb|EMJ04543.1| hypothetical protein PRUPE_ppa020282mg [Prunus persica]
Length = 1496
Score = 57.4 bits (137), Expect = 9e-06
Identities = 33/80 (41%), Positives = 42/80 (52%), Gaps = 3/80 (3%)
Frame = +3
Query: 75 WQMVWKTRCNQRVKLFLWLSLHNRLPTMNLLQ*RRISDSSACHLCPIEDEMVEHVLRSCP 254
W+ +WK R +V++F+W +L N LPT + L RRIS+ C C E E V HVL CP
Sbjct: 1411 WKKIWKARVPPKVRIFIWRALLNILPTKDNLIHRRISELRGCVFCGAE-ETVAHVLLRCP 1469
Query: 255 QAT---*LGPIWDFHNNFLT 305
A L P W N T
Sbjct: 1470 MAIASWSLFPAWAHFNTDAT 1489