BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Catharanthus23_contig00023741
         (231 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_008081297.1| RNA polymerase alpha subunit (chloroplast) [...   104   1e-20
ref|YP_008578571.1| RNA polymerase alpha subunit (chloroplast) [...   100   2e-19
gb|AGW05005.1| RNA polymerase alpha subunit [Vincetoxicum rossicum]   100   2e-19
gb|AGW04774.1| RNA polymerase alpha subunit [Orthosia scoparia]       100   2e-19
gb|AGW04547.1| RNA polymerase alpha subunit [Eustegia minuta]         100   2e-19
gb|AGW04471.1| RNA polymerase alpha subunit [Astephanus triflorus]    100   2e-19
gb|AGW04317.1| RNA polymerase alpha subunit [Secamone afzelii]        100   2e-19
gb|AER53175.1| RNA polymerase alpha subunit [Asclepias subaphylla]    100   2e-19
gb|AER52935.1| RNA polymerase alpha subunit [Asclepias macrotis]...   100   2e-19
gb|AER52444.1| RNA polymerase alpha subunit [Asclepias albicans]...   100   2e-19
ref|YP_008578654.1| RNA polymerase alpha subunit (chloroplast) [...   100   2e-19
gb|ADD31219.1| RNA polymerase alpha subunit protein [Nerium olea...   100   2e-19
gb|AER52608.1| RNA polymerase alpha subunit [Asclepias coulteri]       99   5e-19
gb|AGW04394.1| RNA polymerase alpha subunit [Araujia sericifera]       99   6e-19
gb|AER52690.1| RNA polymerase alpha subunit [Asclepias cutleri] ...    99   8e-19
gb|AGW04851.1| RNA polymerase alpha subunit [Sisyranthus trichos...    97   2e-18
gb|AGW04928.1| RNA polymerase alpha subunit [Telosma cordata]          95   9e-18
gb|AGW04620.1| RNA polymerase alpha subunit [Marsdenia astephano...    95   9e-18
gb|AGW04697.1| RNA polymerase alpha subunit [Matelea biflora]          95   1e-17
gb|ADD31214.1| RNA polymerase alpha subunit protein [Ehretia acu...    94   2e-17

>ref|YP_008081297.1| RNA polymerase alpha subunit (chloroplast) [Catharanthus roseus]
           gi|474452108|gb|AGI51176.1| RNA polymerase alpha subunit
           (chloroplast) [Catharanthus roseus]
          Length = 335

 Score =  104 bits (260), Expect = 1e-20
 Identities = 50/51 (98%), Positives = 51/51 (100%)
 Frame = +3

Query: 3   PRIYNCLKRSNIYTLLDLLNNSQEDLMKMEHFRIEDVKQILIVLEKHLEIF 155
           PRIYNCLKRSNIYTLLDLLNNSQEDLMKMEHFRIEDVKQIL+VLEKHLEIF
Sbjct: 281 PRIYNCLKRSNIYTLLDLLNNSQEDLMKMEHFRIEDVKQILVVLEKHLEIF 331


>ref|YP_008578571.1| RNA polymerase alpha subunit (chloroplast) [Asclepias nivea]
           gi|544187128|gb|AGW05066.1| RNA polymerase alpha subunit
           (chloroplast) [Asclepias nivea]
          Length = 337

 Score =  100 bits (250), Expect = 2e-19
 Identities = 48/51 (94%), Positives = 50/51 (98%)
 Frame = +3

Query: 3   PRIYNCLKRSNIYTLLDLLNNSQEDLMKMEHFRIEDVKQILIVLEKHLEIF 155
           PRIYNCLKRSNIYTLLDLLNNSQEDLMK+EHFRIEDVKQIL+VLEKHL IF
Sbjct: 281 PRIYNCLKRSNIYTLLDLLNNSQEDLMKIEHFRIEDVKQILVVLEKHLAIF 331


>gb|AGW05005.1| RNA polymerase alpha subunit [Vincetoxicum rossicum]
          Length = 337

 Score =  100 bits (250), Expect = 2e-19
 Identities = 48/51 (94%), Positives = 50/51 (98%)
 Frame = +3

Query: 3   PRIYNCLKRSNIYTLLDLLNNSQEDLMKMEHFRIEDVKQILIVLEKHLEIF 155
           PRIYNCLKRSNIYTLLDLLNNSQEDLMK+EHFRIEDVKQIL+VLEKHL IF
Sbjct: 281 PRIYNCLKRSNIYTLLDLLNNSQEDLMKIEHFRIEDVKQILVVLEKHLAIF 331


>gb|AGW04774.1| RNA polymerase alpha subunit [Orthosia scoparia]
          Length = 340

 Score =  100 bits (250), Expect = 2e-19
 Identities = 48/51 (94%), Positives = 50/51 (98%)
 Frame = +3

Query: 3   PRIYNCLKRSNIYTLLDLLNNSQEDLMKMEHFRIEDVKQILIVLEKHLEIF 155
           PRIYNCLKRSNIYTLLDLLNNSQEDLMK+EHFRIEDVKQIL+VLEKHL IF
Sbjct: 281 PRIYNCLKRSNIYTLLDLLNNSQEDLMKIEHFRIEDVKQILVVLEKHLAIF 331


>gb|AGW04547.1| RNA polymerase alpha subunit [Eustegia minuta]
          Length = 344

 Score =  100 bits (250), Expect = 2e-19
 Identities = 48/51 (94%), Positives = 50/51 (98%)
 Frame = +3

Query: 3   PRIYNCLKRSNIYTLLDLLNNSQEDLMKMEHFRIEDVKQILIVLEKHLEIF 155
           PRIYNCLKRSNIYTLLDLLNNSQEDLMK+EHFRIEDVKQIL+VLEKHL IF
Sbjct: 285 PRIYNCLKRSNIYTLLDLLNNSQEDLMKIEHFRIEDVKQILVVLEKHLAIF 335


>gb|AGW04471.1| RNA polymerase alpha subunit [Astephanus triflorus]
          Length = 340

 Score =  100 bits (250), Expect = 2e-19
 Identities = 48/51 (94%), Positives = 50/51 (98%)
 Frame = +3

Query: 3   PRIYNCLKRSNIYTLLDLLNNSQEDLMKMEHFRIEDVKQILIVLEKHLEIF 155
           PRIYNCLKRSNIYTLLDLLNNSQEDLMK+EHFRIEDVKQIL+VLEKHL IF
Sbjct: 281 PRIYNCLKRSNIYTLLDLLNNSQEDLMKIEHFRIEDVKQILVVLEKHLAIF 331


>gb|AGW04317.1| RNA polymerase alpha subunit [Secamone afzelii]
          Length = 337

 Score =  100 bits (250), Expect = 2e-19
 Identities = 48/51 (94%), Positives = 50/51 (98%)
 Frame = +3

Query: 3   PRIYNCLKRSNIYTLLDLLNNSQEDLMKMEHFRIEDVKQILIVLEKHLEIF 155
           PRIYNCLKRSNIYTLLDLLNNSQEDLMK+EHFRIEDVKQIL+VLEKHL IF
Sbjct: 281 PRIYNCLKRSNIYTLLDLLNNSQEDLMKIEHFRIEDVKQILVVLEKHLAIF 331


>gb|AER53175.1| RNA polymerase alpha subunit [Asclepias subaphylla]
          Length = 337

 Score =  100 bits (250), Expect = 2e-19
 Identities = 48/51 (94%), Positives = 50/51 (98%)
 Frame = +3

Query: 3   PRIYNCLKRSNIYTLLDLLNNSQEDLMKMEHFRIEDVKQILIVLEKHLEIF 155
           PRIYNCLKRSNIYTLLDLLNNSQEDLMK+EHFRIEDVKQIL+VLEKHL IF
Sbjct: 281 PRIYNCLKRSNIYTLLDLLNNSQEDLMKIEHFRIEDVKQILVVLEKHLAIF 331


>gb|AER52935.1| RNA polymerase alpha subunit [Asclepias macrotis]
           gi|355332333|gb|AER53015.1| RNA polymerase alpha subunit
           [Asclepias macrotis]
          Length = 337

 Score =  100 bits (250), Expect = 2e-19
 Identities = 48/51 (94%), Positives = 50/51 (98%)
 Frame = +3

Query: 3   PRIYNCLKRSNIYTLLDLLNNSQEDLMKMEHFRIEDVKQILIVLEKHLEIF 155
           PRIYNCLKRSNIYTLLDLLNNSQEDLMK+EHFRIEDVKQIL+VLEKHL IF
Sbjct: 281 PRIYNCLKRSNIYTLLDLLNNSQEDLMKIEHFRIEDVKQILVVLEKHLAIF 331


>gb|AER52444.1| RNA polymerase alpha subunit [Asclepias albicans]
           gi|355331838|gb|AER52526.1| RNA polymerase alpha subunit
           [Asclepias albicans] gi|355332169|gb|AER52853.1| RNA
           polymerase alpha subunit [Asclepias leptopus]
           gi|355332412|gb|AER53093.1| RNA polymerase alpha subunit
           [Asclepias masonii] gi|355332576|gb|AER53255.1| RNA
           polymerase alpha subunit [Asclepias subaphylla]
           gi|355332657|gb|AER53335.1| RNA polymerase alpha subunit
           [Asclepias subulata] gi|355332740|gb|AER53417.1| RNA
           polymerase alpha subunit [Asclepias subulata]
           gi|355332823|gb|AER53499.1| RNA polymerase alpha subunit
           [Asclepias albicans x Asclepias subulata]
          Length = 337

 Score =  100 bits (250), Expect = 2e-19
 Identities = 48/51 (94%), Positives = 50/51 (98%)
 Frame = +3

Query: 3   PRIYNCLKRSNIYTLLDLLNNSQEDLMKMEHFRIEDVKQILIVLEKHLEIF 155
           PRIYNCLKRSNIYTLLDLLNNSQEDLMK+EHFRIEDVKQIL+VLEKHL IF
Sbjct: 281 PRIYNCLKRSNIYTLLDLLNNSQEDLMKIEHFRIEDVKQILVVLEKHLAIF 331


>ref|YP_008578654.1| RNA polymerase alpha subunit (chloroplast) [Asclepias syriaca]
           gi|326200311|gb|ADZ52350.1| RNA polymerase alpha subunit
           [Asclepias syriaca] gi|544187240|gb|AGW05168.1| RNA
           polymerase alpha subunit (chloroplast) [Asclepias
           syriaca]
          Length = 340

 Score =  100 bits (250), Expect = 2e-19
 Identities = 48/51 (94%), Positives = 50/51 (98%)
 Frame = +3

Query: 3   PRIYNCLKRSNIYTLLDLLNNSQEDLMKMEHFRIEDVKQILIVLEKHLEIF 155
           PRIYNCLKRSNIYTLLDLLNNSQEDLMK+EHFRIEDVKQIL+VLEKHL IF
Sbjct: 281 PRIYNCLKRSNIYTLLDLLNNSQEDLMKIEHFRIEDVKQILVVLEKHLAIF 331


>gb|ADD31219.1| RNA polymerase alpha subunit protein [Nerium oleander]
          Length = 337

 Score =  100 bits (249), Expect = 2e-19
 Identities = 47/51 (92%), Positives = 50/51 (98%)
 Frame = +3

Query: 3   PRIYNCLKRSNIYTLLDLLNNSQEDLMKMEHFRIEDVKQILIVLEKHLEIF 155
           PRIYNCLKRSNIYTLLDLLNNSQEDLMK+EHFRIEDVKQIL++LEKHL IF
Sbjct: 281 PRIYNCLKRSNIYTLLDLLNNSQEDLMKIEHFRIEDVKQILVILEKHLAIF 331


>gb|AER52608.1| RNA polymerase alpha subunit [Asclepias coulteri]
          Length = 337

 Score = 99.4 bits (246), Expect = 5e-19
 Identities = 47/51 (92%), Positives = 50/51 (98%)
 Frame = +3

Query: 3   PRIYNCLKRSNIYTLLDLLNNSQEDLMKMEHFRIEDVKQILIVLEKHLEIF 155
           PRIYNCLKRSNIYTLLDLLNNSQEDLMK+EHFRIEDVKQIL+VL+KHL IF
Sbjct: 281 PRIYNCLKRSNIYTLLDLLNNSQEDLMKIEHFRIEDVKQILVVLKKHLAIF 331


>gb|AGW04394.1| RNA polymerase alpha subunit [Araujia sericifera]
          Length = 340

 Score = 99.0 bits (245), Expect = 6e-19
 Identities = 47/51 (92%), Positives = 49/51 (96%)
 Frame = +3

Query: 3   PRIYNCLKRSNIYTLLDLLNNSQEDLMKMEHFRIEDVKQILIVLEKHLEIF 155
           PRIYNCLKRSNIYTLLDLLNNSQEDLMK+EHF IEDVKQIL+VLEKHL IF
Sbjct: 281 PRIYNCLKRSNIYTLLDLLNNSQEDLMKIEHFHIEDVKQILVVLEKHLAIF 331


>gb|AER52690.1| RNA polymerase alpha subunit [Asclepias cutleri]
           gi|355332087|gb|AER52772.1| RNA polymerase alpha subunit
           [Asclepias cutleri]
          Length = 337

 Score = 98.6 bits (244), Expect = 8e-19
 Identities = 47/51 (92%), Positives = 49/51 (96%)
 Frame = +3

Query: 3   PRIYNCLKRSNIYTLLDLLNNSQEDLMKMEHFRIEDVKQILIVLEKHLEIF 155
           PRIYNCLKRSNIYTLLDLLN SQEDLMK+EHFRIEDVKQIL+VLEKHL IF
Sbjct: 281 PRIYNCLKRSNIYTLLDLLNTSQEDLMKIEHFRIEDVKQILVVLEKHLAIF 331


>gb|AGW04851.1| RNA polymerase alpha subunit [Sisyranthus trichostomus]
          Length = 342

 Score = 97.4 bits (241), Expect = 2e-18
 Identities = 47/51 (92%), Positives = 49/51 (96%)
 Frame = +3

Query: 3   PRIYNCLKRSNIYTLLDLLNNSQEDLMKMEHFRIEDVKQILIVLEKHLEIF 155
           PRIYNCLKRSNI TLLDLLNNSQEDLMK+EHFRIEDVKQIL+VLEKHL IF
Sbjct: 283 PRIYNCLKRSNISTLLDLLNNSQEDLMKIEHFRIEDVKQILVVLEKHLAIF 333


>gb|AGW04928.1| RNA polymerase alpha subunit [Telosma cordata]
          Length = 340

 Score = 95.1 bits (235), Expect = 9e-18
 Identities = 45/51 (88%), Positives = 49/51 (96%)
 Frame = +3

Query: 3   PRIYNCLKRSNIYTLLDLLNNSQEDLMKMEHFRIEDVKQILIVLEKHLEIF 155
           PRIYNCLK+SNI TLLDLLNNSQEDLMK+EHFRIEDVKQIL++LEKHL IF
Sbjct: 281 PRIYNCLKKSNISTLLDLLNNSQEDLMKIEHFRIEDVKQILVLLEKHLAIF 331


>gb|AGW04620.1| RNA polymerase alpha subunit [Marsdenia astephanoides]
          Length = 340

 Score = 95.1 bits (235), Expect = 9e-18
 Identities = 45/51 (88%), Positives = 49/51 (96%)
 Frame = +3

Query: 3   PRIYNCLKRSNIYTLLDLLNNSQEDLMKMEHFRIEDVKQILIVLEKHLEIF 155
           PRIYNCLK+SNI TLLDLLNNSQEDLMK+EHFRIEDVKQIL++LEKHL IF
Sbjct: 281 PRIYNCLKKSNISTLLDLLNNSQEDLMKIEHFRIEDVKQILVLLEKHLAIF 331


>gb|AGW04697.1| RNA polymerase alpha subunit [Matelea biflora]
          Length = 335

 Score = 94.7 bits (234), Expect = 1e-17
 Identities = 44/48 (91%), Positives = 48/48 (100%)
 Frame = +3

Query: 3   PRIYNCLKRSNIYTLLDLLNNSQEDLMKMEHFRIEDVKQILIVLEKHL 146
           PRIYNCLKRSNIYTLLDLLNNSQEDLMK+EHFRIEDVK+IL+V+EKHL
Sbjct: 281 PRIYNCLKRSNIYTLLDLLNNSQEDLMKIEHFRIEDVKRILVVVEKHL 328


>gb|ADD31214.1| RNA polymerase alpha subunit protein [Ehretia acuminata]
          Length = 339

 Score = 94.0 bits (232), Expect = 2e-17
 Identities = 45/50 (90%), Positives = 47/50 (94%)
 Frame = +3

Query: 3   PRIYNCLKRSNIYTLLDLLNNSQEDLMKMEHFRIEDVKQILIVLEKHLEI 152
           PRIYNCLKRSNIYTLLDLLNNSQEDLMK+EHFRIEDVKQIL +LEKH  I
Sbjct: 283 PRIYNCLKRSNIYTLLDLLNNSQEDLMKIEHFRIEDVKQILGILEKHFAI 332