BLASTX nr result
ID: Catharanthus23_contig00023091
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Catharanthus23_contig00023091
(701 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_006339168.1| PREDICTED: pentatricopeptide repeat-containi... 99 1e-18
ref|XP_004249774.1| PREDICTED: pentatricopeptide repeat-containi... 94 4e-17
ref|XP_002276453.1| PREDICTED: pentatricopeptide repeat-containi... 89 1e-15
emb|CAN80799.1| hypothetical protein VITISV_019809 [Vitis vinifera] 89 1e-15
ref|XP_004144290.1| PREDICTED: pentatricopeptide repeat-containi... 74 4e-11
gb|EMJ27562.1| hypothetical protein PRUPE_ppa022421mg [Prunus pe... 74 6e-11
gb|EOX91915.1| Pentatricopeptide repeat (PPR) superfamily protei... 73 1e-10
ref|XP_003613018.1| Pentatricopeptide repeat-containing protein ... 72 1e-10
gb|EPS72780.1| hypothetical protein M569_01977, partial [Genlise... 72 2e-10
ref|XP_002326371.1| predicted protein [Populus trichocarpa] gi|5... 72 2e-10
ref|XP_002882332.1| hypothetical protein ARALYDRAFT_896436 [Arab... 64 4e-08
ref|XP_004512571.1| PREDICTED: pentatricopeptide repeat-containi... 64 5e-08
ref|XP_006300966.1| hypothetical protein CARUB_v10021355mg, part... 63 1e-07
ref|XP_002866679.1| pentatricopeptide repeat-containing protein ... 62 1e-07
ref|XP_006279977.1| hypothetical protein CARUB_v10025847mg [Caps... 61 3e-07
gb|EMJ15541.1| hypothetical protein PRUPE_ppa027136mg, partial [... 61 4e-07
ref|XP_006442168.1| hypothetical protein CICLE_v10018770mg [Citr... 59 1e-06
ref|XP_006838717.1| hypothetical protein AMTR_s00002p00251730 [A... 58 3e-06
ref|XP_003533421.1| PREDICTED: pentatricopeptide repeat-containi... 57 7e-06
ref|NP_201359.1| pentatricopeptide repeat-containing protein [Ar... 56 1e-05
>ref|XP_006339168.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65560-like isoform X1 [Solanum tuberosum]
gi|565344128|ref|XP_006339169.1| PREDICTED:
pentatricopeptide repeat-containing protein
At5g65560-like isoform X2 [Solanum tuberosum]
gi|565344130|ref|XP_006339170.1| PREDICTED:
pentatricopeptide repeat-containing protein
At5g65560-like isoform X3 [Solanum tuberosum]
gi|565344132|ref|XP_006339171.1| PREDICTED:
pentatricopeptide repeat-containing protein
At5g65560-like isoform X4 [Solanum tuberosum]
Length = 915
Score = 99.4 bits (246), Expect = 1e-18
Identities = 57/104 (54%), Positives = 71/104 (68%), Gaps = 11/104 (10%)
Frame = +1
Query: 361 KQGQS-TLFF--LSNKPFSVVPS-------IAYPISSESIVTD-VSTQLYSLLTRPNWQK 507
+ GQS +LFF + + PFSV PS I P SE I D +S+QL +LL+ PNWQK
Sbjct: 14 RSGQSISLFFSLIKSFPFSVAPSPSSSPSPILSPEESEPISIDPLSSQLLNLLSHPNWQK 73
Query: 508 NPNFKKLIPNLSPSHISDFLAQYPNLNPQTALNFFDYLCRLPSF 639
+P+ K LIP+LSPS +S FL+Q PNLNP A +FFDYL RLPSF
Sbjct: 74 HPSLKNLIPSLSPSRLSSFLSQNPNLNPHIAFSFFDYLSRLPSF 117
>ref|XP_004249774.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65560-like [Solanum lycopersicum]
Length = 913
Score = 94.0 bits (232), Expect = 4e-17
Identities = 54/102 (52%), Positives = 67/102 (65%), Gaps = 9/102 (8%)
Frame = +1
Query: 361 KQGQS-TLFFLSNKPF-------SVVPSIAYPISSESIVTD-VSTQLYSLLTRPNWQKNP 513
+ GQS +LFF K F S SI P SE I D +S+QL +LL+ PNWQK+P
Sbjct: 14 RSGQSISLFFTLIKSFPFSSSSSSSPSSILSPEESEPISIDPLSSQLLNLLSHPNWQKHP 73
Query: 514 NFKKLIPNLSPSHISDFLAQYPNLNPQTALNFFDYLCRLPSF 639
+ K LIP+LSPS +S FL+Q PNLNP A +FFDYL R+PSF
Sbjct: 74 SLKNLIPSLSPSRLSSFLSQNPNLNPHIAFSFFDYLSRIPSF 115
>ref|XP_002276453.1| PREDICTED: pentatricopeptide repeat-containing protein At5g65560
[Vitis vinifera] gi|296084392|emb|CBI24780.3| unnamed
protein product [Vitis vinifera]
Length = 890
Score = 89.0 bits (219), Expect = 1e-15
Identities = 47/102 (46%), Positives = 71/102 (69%)
Frame = +1
Query: 334 LRSAASINIKQGQSTLFFLSNKPFSVVPSIAYPISSESIVTDVSTQLYSLLTRPNWQKNP 513
+R +A+I IK G+ L L KP+S + S+ +S +S D+S QL S+L+RPNWQK+P
Sbjct: 1 MRKSAAI-IKPGEYLLILL--KPYSSIASLPQILSLDSEPVDLSAQLLSILSRPNWQKHP 57
Query: 514 NFKKLIPNLSPSHISDFLAQYPNLNPQTALNFFDYLCRLPSF 639
+ +KL+P+L+PSH+S A NL+PQTAL+FF+++ P F
Sbjct: 58 SLRKLLPSLTPSHVSSLFAF--NLDPQTALSFFNWIALRPGF 97
>emb|CAN80799.1| hypothetical protein VITISV_019809 [Vitis vinifera]
Length = 1099
Score = 89.0 bits (219), Expect = 1e-15
Identities = 47/102 (46%), Positives = 71/102 (69%)
Frame = +1
Query: 334 LRSAASINIKQGQSTLFFLSNKPFSVVPSIAYPISSESIVTDVSTQLYSLLTRPNWQKNP 513
+R +A+I IK G+ L L KP+S + S+ +S +S D+S QL S+L+RPNWQK+P
Sbjct: 1 MRKSAAI-IKPGEYLLILL--KPYSSIASLPQILSLDSEPVDLSAQLLSILSRPNWQKHP 57
Query: 514 NFKKLIPNLSPSHISDFLAQYPNLNPQTALNFFDYLCRLPSF 639
+ +KL+P+L+PSH+S A NL+PQTAL+FF+++ P F
Sbjct: 58 SLRKLLPSLTPSHVSSLFAF--NLDPQTALSFFNWIALRPGF 97
>ref|XP_004144290.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65560-like [Cucumis sativus]
gi|449522905|ref|XP_004168466.1| PREDICTED:
pentatricopeptide repeat-containing protein
At5g65560-like [Cucumis sativus]
Length = 915
Score = 73.9 bits (180), Expect = 4e-11
Identities = 42/103 (40%), Positives = 66/103 (64%)
Frame = +1
Query: 313 IQSSTTMLRSAASINIKQGQSTLFFLSNKPFSVVPSIAYPISSESIVTDVSTQLYSLLTR 492
I++ST +++S + + + L F F P+ + P S S+ D+ QL+S+L+R
Sbjct: 2 IRNSTAIIKSGQLLVVLGFRLRLTFSITHRFFTSPA-SLP-QSFSVEHDIPAQLFSILSR 59
Query: 493 PNWQKNPNFKKLIPNLSPSHISDFLAQYPNLNPQTALNFFDYL 621
PNWQK+P+ K LIP+++PSHIS A NL+PQTAL FF+++
Sbjct: 60 PNWQKHPSLKNLIPSIAPSHISALFAL--NLDPQTALAFFNWI 100
>gb|EMJ27562.1| hypothetical protein PRUPE_ppa022421mg [Prunus persica]
Length = 845
Score = 73.6 bits (179), Expect = 6e-11
Identities = 37/87 (42%), Positives = 58/87 (66%), Gaps = 6/87 (6%)
Frame = +1
Query: 397 KPFSVVPSIAY------PISSESIVTDVSTQLYSLLTRPNWQKNPNFKKLIPNLSPSHIS 558
KPFS + A P+ + + D+S+QL+++L+RPNWQ++P+ KKLIP++S SH+S
Sbjct: 29 KPFSTSSTTAAASPSLPPVPEQPV--DLSSQLFAILSRPNWQRHPSLKKLIPSISASHVS 86
Query: 559 DFLAQYPNLNPQTALNFFDYLCRLPSF 639
A NL+PQTAL FF+++ P +
Sbjct: 87 SLFAL--NLDPQTALGFFNWIALKPGY 111
>gb|EOX91915.1| Pentatricopeptide repeat (PPR) superfamily protein, putative
isoform 1 [Theobroma cacao] gi|508700020|gb|EOX91916.1|
Pentatricopeptide repeat (PPR) superfamily protein,
putative isoform 1 [Theobroma cacao]
Length = 946
Score = 72.8 bits (177), Expect = 1e-10
Identities = 41/117 (35%), Positives = 68/117 (58%)
Frame = +1
Query: 289 IHGALISTIQSSTTMLRSAASINIKQGQSTLFFLSNKPFSVVPSIAYPISSESIVTDVST 468
++G+ T + TM A +N Q L L+ K S PS + P+ + D+
Sbjct: 28 MNGSPTITTVRAPTMRNPIAIVNPGQSFHFLSILA-KSLSSFPS-SLPLDPDPPDHDIPL 85
Query: 469 QLYSLLTRPNWQKNPNFKKLIPNLSPSHISDFLAQYPNLNPQTALNFFDYLCRLPSF 639
L+S+L++PNWQ++P+ KLIP++SPSH+ + PNL P+TAL+F ++ + P+F
Sbjct: 86 LLHSILSKPNWQRHPSLPKLIPSISPSHVHSLFSLNPNLLPKTALDFSYWISKKPNF 142
>ref|XP_003613018.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355514353|gb|AES95976.1| Pentatricopeptide
repeat-containing protein [Medicago truncatula]
Length = 894
Score = 72.4 bits (176), Expect = 1e-10
Identities = 39/89 (43%), Positives = 58/89 (65%)
Frame = +1
Query: 355 NIKQGQSTLFFLSNKPFSVVPSIAYPISSESIVTDVSTQLYSLLTRPNWQKNPNFKKLIP 534
N Q Q+ LF L KPFS +S S+ D+ +Q++++L +P W+KNP+F LIP
Sbjct: 14 NQNQNQN-LFHLLLKPFS-------SLSPNSLQQDLPSQIFTILLQPQWRKNPSFNTLIP 65
Query: 535 NLSPSHISDFLAQYPNLNPQTALNFFDYL 621
+L+P+H+S L PNL+P TALNFF ++
Sbjct: 66 SLTPTHLSS-LFNNPNLHPLTALNFFKWI 93
>gb|EPS72780.1| hypothetical protein M569_01977, partial [Genlisea aurea]
Length = 897
Score = 71.6 bits (174), Expect = 2e-10
Identities = 36/85 (42%), Positives = 47/85 (55%)
Frame = +1
Query: 385 FLSNKPFSVVPSIAYPISSESIVTDVSTQLYSLLTRPNWQKNPNFKKLIPNLSPSHISDF 564
F FS+ P P S S V + L+S+L RPNW K+P+ K ++SP S F
Sbjct: 30 FFKQLSFSISPEPISPPESSSAV--LCRDLFSILCRPNWPKDPSLKNFFHSISPPLFSSF 87
Query: 565 LAQYPNLNPQTALNFFDYLCRLPSF 639
L+QYP+LNP A FF +L PSF
Sbjct: 88 LSQYPHLNPHVAFQFFRFLSSAPSF 112
>ref|XP_002326371.1| predicted protein [Populus trichocarpa]
gi|566175973|ref|XP_006381417.1| pentatricopeptide
repeat-containing family protein [Populus trichocarpa]
gi|550336120|gb|ERP59214.1| pentatricopeptide
repeat-containing family protein [Populus trichocarpa]
Length = 726
Score = 71.6 bits (174), Expect = 2e-10
Identities = 41/110 (37%), Positives = 63/110 (57%), Gaps = 5/110 (4%)
Frame = +1
Query: 307 STIQSSTTMLRSAASINIKQGQSTLFFLSNKPFSVVPSIAYPISSESIVTDVSTQL---- 474
S ++ S+ ++ S++S + S +F KP S S + I+S + D L
Sbjct: 3 SVMRKSSFVIPSSSS---GESSSPIFHHLKKPISSSSSPSSSIASLPVEPDPPDDLSSHH 59
Query: 475 -YSLLTRPNWQKNPNFKKLIPNLSPSHISDFLAQYPNLNPQTALNFFDYL 621
S+L+ P WQ++P+F+KLIPNLSPSH+S +P+LNP AL FF+ L
Sbjct: 60 FLSILSHPKWQRHPSFQKLIPNLSPSHVSSLFNNHPDLNPNIALQFFNSL 109
>ref|XP_002882332.1| hypothetical protein ARALYDRAFT_896436 [Arabidopsis lyrata subsp.
lyrata] gi|297328172|gb|EFH58591.1| hypothetical protein
ARALYDRAFT_896436 [Arabidopsis lyrata subsp. lyrata]
Length = 790
Score = 64.3 bits (155), Expect = 4e-08
Identities = 32/87 (36%), Positives = 53/87 (60%), Gaps = 1/87 (1%)
Frame = +1
Query: 382 FFLSNKPFSVVPSIAY-PISSESIVTDVSTQLYSLLTRPNWQKNPNFKKLIPNLSPSHIS 558
+ L PFS ++ + P +ES + + L S+L++PNWQ NP+ K L+P ++PSH+S
Sbjct: 13 YLLRRIPFSSTSTLLHTPPEAESDPSHLPHHLLSILSKPNWQNNPSLKSLLPAITPSHVS 72
Query: 559 DFLAQYPNLNPQTALNFFDYLCRLPSF 639
+ NL+P TAL F ++ + P+F
Sbjct: 73 SLFSL--NLDPHTALQFSYWISQTPNF 97
>ref|XP_004512571.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65560-like isoform X1 [Cicer arietinum]
gi|502162660|ref|XP_004512572.1| PREDICTED:
pentatricopeptide repeat-containing protein
At5g65560-like isoform X2 [Cicer arietinum]
Length = 927
Score = 63.9 bits (154), Expect = 5e-08
Identities = 33/81 (40%), Positives = 50/81 (61%)
Frame = +1
Query: 379 LFFLSNKPFSVVPSIAYPISSESIVTDVSTQLYSLLTRPNWQKNPNFKKLIPNLSPSHIS 558
LF + KPFS +P D+ +Q+Y++L+ P W+K+P+F LIP+L+P+HIS
Sbjct: 17 LFHVLFKPFSSLPQ----------QPDLPSQIYTILSNPQWRKDPSFNTLIPSLTPTHIS 66
Query: 559 DFLAQYPNLNPQTALNFFDYL 621
NL+P TALNFF ++
Sbjct: 67 SLFNL--NLHPLTALNFFKWI 85
>ref|XP_006300966.1| hypothetical protein CARUB_v10021355mg, partial [Capsella rubella]
gi|482569676|gb|EOA33864.1| hypothetical protein
CARUB_v10021355mg, partial [Capsella rubella]
Length = 750
Score = 62.8 bits (151), Expect = 1e-07
Identities = 28/66 (42%), Positives = 44/66 (66%)
Frame = +1
Query: 442 ESIVTDVSTQLYSLLTRPNWQKNPNFKKLIPNLSPSHISDFLAQYPNLNPQTALNFFDYL 621
ES +++ QL S+ + PNWQ NP+ K L+P ++PSH+S + NL+P TAL+F D++
Sbjct: 18 ESDSSNLPCQLLSIFSEPNWQNNPSLKSLVPAITPSHVSSLFSL--NLDPLTALSFSDWI 75
Query: 622 CRLPSF 639
+ P F
Sbjct: 76 SQTPKF 81
>ref|XP_002866679.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata] gi|297312514|gb|EFH42938.1|
pentatricopeptide repeat-containing protein [Arabidopsis
lyrata subsp. lyrata]
Length = 915
Score = 62.4 bits (150), Expect = 1e-07
Identities = 31/78 (39%), Positives = 49/78 (62%)
Frame = +1
Query: 406 SVVPSIAYPISSESIVTDVSTQLYSLLTRPNWQKNPNFKKLIPNLSPSHISDFLAQYPNL 585
SV P I ES T V +L+S+L++PNW K P+ K ++P +SPSH+S + +L
Sbjct: 44 SVSPLIRNLPEDESDPTSVPHRLFSILSKPNWHKCPSLKSMVPAISPSHVSSLFSL--DL 101
Query: 586 NPQTALNFFDYLCRLPSF 639
+P+TALNF ++ + P +
Sbjct: 102 DPKTALNFSHWISQNPRY 119
>ref|XP_006279977.1| hypothetical protein CARUB_v10025847mg [Capsella rubella]
gi|482548681|gb|EOA12875.1| hypothetical protein
CARUB_v10025847mg [Capsella rubella]
Length = 915
Score = 61.2 bits (147), Expect = 3e-07
Identities = 30/78 (38%), Positives = 49/78 (62%)
Frame = +1
Query: 406 SVVPSIAYPISSESIVTDVSTQLYSLLTRPNWQKNPNFKKLIPNLSPSHISDFLAQYPNL 585
S P I + ES T V +L S+L++PNW K+P+ + ++P +SPSH+S + +L
Sbjct: 44 SASPLIRTLPAEESDPTSVPHRLLSILSKPNWHKSPSLRSMVPAISPSHVSSLFSL--DL 101
Query: 586 NPQTALNFFDYLCRLPSF 639
+P+TALNF ++ + P F
Sbjct: 102 DPKTALNFSHWISQNPRF 119
>gb|EMJ15541.1| hypothetical protein PRUPE_ppa027136mg, partial [Prunus persica]
Length = 783
Score = 60.8 bits (146), Expect = 4e-07
Identities = 36/110 (32%), Positives = 60/110 (54%)
Frame = +1
Query: 310 TIQSSTTMLRSAASINIKQGQSTLFFLSNKPFSVVPSIAYPISSESIVTDVSTQLYSLLT 489
T+ S M+ + I Q+ FL PFS +I D+S++L+++L+
Sbjct: 2 TLPKSFLMMMRKLTAVISPHQTLQLFL-RMPFSC-----------TIKRDISSELFAVLS 49
Query: 490 RPNWQKNPNFKKLIPNLSPSHISDFLAQYPNLNPQTALNFFDYLCRLPSF 639
P WQK+P+ KL+P++SPSH+S A L+P+ A++FF ++ R F
Sbjct: 50 SPKWQKHPSLGKLMPSISPSHVSSLFAL--KLDPKIAIDFFCWIARTRRF 97
>ref|XP_006442168.1| hypothetical protein CICLE_v10018770mg [Citrus clementina]
gi|557544430|gb|ESR55408.1| hypothetical protein
CICLE_v10018770mg [Citrus clementina]
Length = 910
Score = 59.3 bits (142), Expect = 1e-06
Identities = 40/104 (38%), Positives = 61/104 (58%), Gaps = 3/104 (2%)
Frame = +1
Query: 337 RSAASINIKQGQSTLFFLSNKPFSVVPSIA-YPISSESIVTDVSTQLYSLL-TRPN-WQK 507
R+ A+I +S FL PF SI+ P+ + D+ +Q++++L T P WQ+
Sbjct: 4 RTPAAIFTAFTKSPGQFLIKYPFCTSSSISSLPLPLDPDPPDLPSQIFTILSTHPTTWQR 63
Query: 508 NPNFKKLIPNLSPSHISDFLAQYPNLNPQTALNFFDYLCRLPSF 639
+P+ KLIP LSPSHIS + +LNPQTAL+F ++ + P F
Sbjct: 64 HPSITKLIPLLSPSHISSLFSL--DLNPQTALDFSYWISQKPGF 105
>ref|XP_006838717.1| hypothetical protein AMTR_s00002p00251730 [Amborella trichopoda]
gi|548841223|gb|ERN01286.1| hypothetical protein
AMTR_s00002p00251730 [Amborella trichopoda]
Length = 904
Score = 58.2 bits (139), Expect = 3e-06
Identities = 33/105 (31%), Positives = 59/105 (56%), Gaps = 3/105 (2%)
Frame = +1
Query: 334 LRSAASINIKQGQSTLFFLSNKPF---SVVPSIAYPISSESIVTDVSTQLYSLLTRPNWQ 504
+R A++ N Q ++ L L+ + + S P S ++ + D+ +Q+ + + RP WQ
Sbjct: 1 MRRASTFNPGQSKTILMLLNKRLLHFTKCISSFPIPDSPDAELFDLPSQVRAAIVRPGWQ 60
Query: 505 KNPNFKKLIPNLSPSHISDFLAQYPNLNPQTALNFFDYLCRLPSF 639
KNP FKKL +L+P H+ L L+ + ALNFF ++ ++P +
Sbjct: 61 KNPFFKKLAFSLTPFHVCKVLELI--LDTKIALNFFFWMGQVPGY 103
>ref|XP_003533421.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65560-like isoform X1 [Glycine max]
gi|571478486|ref|XP_006587579.1| PREDICTED:
pentatricopeptide repeat-containing protein
At5g65560-like isoform X2 [Glycine max]
gi|571478488|ref|XP_006587580.1| PREDICTED:
pentatricopeptide repeat-containing protein
At5g65560-like isoform X3 [Glycine max]
Length = 892
Score = 56.6 bits (135), Expect = 7e-06
Identities = 32/72 (44%), Positives = 47/72 (65%), Gaps = 2/72 (2%)
Frame = +1
Query: 430 PISSESIVTDVSTQLYSLLTRPNWQKNPNFKKLIPNLSPSHISDFLAQYPNLNPQ--TAL 603
P SS S + + TQ++++L+RP W+K+P+ K LIP+L+PS L NLNP TAL
Sbjct: 17 PFSSSS--SSLPTQIFTILSRPRWRKDPSLKTLIPSLTPS----LLCSLFNLNPDPLTAL 70
Query: 604 NFFDYLCRLPSF 639
NFF ++ R +F
Sbjct: 71 NFFRWIRRHHNF 82
>ref|NP_201359.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75180383|sp|Q9LSL9.1|PP445_ARATH RecName:
Full=Pentatricopeptide repeat-containing protein
At5g65560 gi|8978284|dbj|BAA98175.1| unnamed protein
product [Arabidopsis thaliana]
gi|110737310|dbj|BAF00601.1| hypothetical protein
[Arabidopsis thaliana] gi|332010688|gb|AED98071.1|
pentatricopeptide repeat-containing protein [Arabidopsis
thaliana]
Length = 915
Score = 56.2 bits (134), Expect = 1e-05
Identities = 28/78 (35%), Positives = 47/78 (60%)
Frame = +1
Query: 406 SVVPSIAYPISSESIVTDVSTQLYSLLTRPNWQKNPNFKKLIPNLSPSHISDFLAQYPNL 585
SV P + ES V +L S+L++PNW K+P+ K ++ +SPSH+S + +L
Sbjct: 44 SVSPLLRNLPEEESDSMSVPHRLLSILSKPNWHKSPSLKSMVSAISPSHVSSLFSL--DL 101
Query: 586 NPQTALNFFDYLCRLPSF 639
+P+TALNF ++ + P +
Sbjct: 102 DPKTALNFSHWISQNPRY 119