BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Catharanthus23_contig00022904
         (494 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN65222.1| hypothetical protein VITISV_038665 [Vitis vinifera]    59   1e-14
gb|ACS74199.1| putative gag-pol polyprotein [Fragaria x ananassa]      58   6e-14
gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group...    60   9e-14
emb|CAN61272.1| hypothetical protein VITISV_039063 [Vitis vinifera]    59   2e-13
gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subc...    60   3e-13
gb|AAL91607.1|AC099400_13 Putative pol polyprotein [Oryza sativa...    59   1e-12
emb|CAE03834.3| OSJNBb0013J13.11 [Oryza sativa Japonica Group]         57   1e-12
gb|ABA99474.1| retrotransposon protein, putative, Ty1-copia subc...    62   2e-12
gb|ABA96718.1| retrotransposon protein, putative, Ty1-copia subc...    59   3e-12
emb|CAN80304.1| hypothetical protein VITISV_017821 [Vitis vinifera]    59   4e-12
gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]      61   4e-12
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-...    61   6e-12
emb|CAJ86151.1| H0413E07.4 [Oryza sativa Indica Group]                 62   8e-12
emb|CAJ86192.1| H0306F03.15 [Oryza sativa Indica Group]                62   8e-12
gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-...    57   1e-11
gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subc...    57   1e-11
gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subc...    57   1e-11
gb|AAT44282.1| putative polyprotein [Oryza sativa Japonica Group]      60   1e-11
gb|AAW22873.1| putative polyprotein [Solanum lycopersicum]             74   2e-11
emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group]            57   2e-11

>emb|CAN65222.1| hypothetical protein VITISV_038665 [Vitis vinifera]
          Length = 1562

 Score = 59.3 bits (142), Expect(3) = 1e-14
 Identities = 34/80 (42%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
 Frame = -3

Query: 246  VKYKRIKIMLSIV-FFNLELEKLAVKIVFLHGDLHKAIYIKQPPDFEVKGKENFFCXXXX 70
            VK+K I+++L++V  FNLEL++L VK  FLHG+L + IY+KQP  F    K +  C    
Sbjct: 1003 VKHKSIRVLLAMVSVFNLELDQLDVKTAFLHGNLEEEIYMKQPEGFVDSEKSDHVCFLKK 1062

Query: 69   XXXXXXXSPI*SYIRFDTFI 10
                   SP   Y RFD F+
Sbjct: 1063 SLYGLKQSPRQWYKRFDAFM 1082



 Score = 42.0 bits (97), Expect(3) = 1e-14
 Identities = 19/38 (50%), Positives = 28/38 (73%)
 Frame = -2

Query: 385  KLIDCK*IFKIKESNYENEPTRFKVRLVAKCFSRKKSL 272
            K +DCK +FKIK+    +EP ++K RLVAK FS+K+ +
Sbjct: 956  KPVDCKWLFKIKDGISXDEPPKYKSRLVAKGFSQKEGI 993



 Score = 23.1 bits (48), Expect(3) = 1e-14
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -1

Query: 299  KMFFTKEVIDFIEIFSPL 246
            K F  KE ID+ E+FSP+
Sbjct: 985  KGFSQKEGIDYNEVFSPV 1002


>gb|ACS74199.1| putative gag-pol polyprotein [Fragaria x ananassa]
          Length = 1297

 Score = 58.2 bits (139), Expect(3) = 6e-14
 Identities = 35/85 (41%), Positives = 49/85 (57%), Gaps = 2/85 (2%)
 Frame = -3

Query: 258  IFS-FVKYKRIKIMLSIVF-FNLELEKLAVKIVFLHGDLHKAIYIKQPPDFEVKGKENFF 85
            IFS  VK+  I+++LSI   +++E+E++ VK  FLHGDL + IY+ QP  F   GKEN  
Sbjct: 866  IFSPVVKHTSIRLLLSIAAQYDMEIEQMDVKTAFLHGDLEEDIYMSQPEGFVETGKENLV 925

Query: 84   CXXXXXXXXXXXSPI*SYIRFDTFI 10
            C           SP   Y  FDT++
Sbjct: 926  CRLKKSLYGLKQSPRQWYKPFDTYM 950



 Score = 42.0 bits (97), Expect(3) = 6e-14
 Identities = 21/46 (45%), Positives = 32/46 (69%), Gaps = 1/46 (2%)
 Frame = -2

Query: 406 LVPKSKH-KLIDCK*IFKIKESNYENEPTRFKVRLVAKCFSRKKSL 272
           LVPK K  KL+ CK +F+ KE  +E++   +K RLVAK +S+K+ +
Sbjct: 816 LVPKPKERKLVGCKWVFRKKEGIHEDDAITYKARLVAKGYSQKEGV 861



 Score = 21.9 bits (45), Expect(3) = 6e-14
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -1

Query: 299 KMFFTKEVIDFIEIFSPL 246
           K +  KE +D+ EIFSP+
Sbjct: 853 KGYSQKEGVDYDEIFSPV 870


>gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group]
            gi|53370655|gb|AAU89150.1| integrase core domain
            containing protein [Oryza sativa Japonica Group]
            gi|108710286|gb|ABF98081.1| retrotransposon protein,
            putative, Ty1-copia subclass [Oryza sativa Japonica
            Group]
          Length = 1322

 Score = 60.1 bits (144), Expect(2) = 9e-14
 Identities = 37/86 (43%), Positives = 50/86 (58%), Gaps = 2/86 (2%)
 Frame = -3

Query: 261  NIFS-FVKYKRIKIMLSIV-FFNLELEKLAVKIVFLHGDLHKAIYIKQPPDFEVKGKENF 88
            ++FS  VK+  I+   SIV   +LELE+L VK  FLHG+L + IY+ QP  F V GKE++
Sbjct: 889  DVFSPVVKHSSIRTFFSIVTMHDLELEQLDVKTTFLHGELEEEIYMDQPEGFIVPGKEDY 948

Query: 87   FCXXXXXXXXXXXSPI*SYIRFDTFI 10
             C           SP   Y RFD+F+
Sbjct: 949  VCKLKRSLYGLKQSPRQWYKRFDSFM 974



 Score = 42.0 bits (97), Expect(2) = 9e-14
 Identities = 24/40 (60%), Positives = 28/40 (70%)
 Frame = -2

Query: 403 VPKSKHKLIDCK*IFKIKESNYENEPTRFKVRLVAKCFSR 284
           +PK K K + CK IFK KE    +EP RFKVRLVAK FS+
Sbjct: 843 LPKQK-KPVRCKWIFKRKEGLSPSEPPRFKVRLVAKGFSQ 881


>emb|CAN61272.1| hypothetical protein VITISV_039063 [Vitis vinifera]
          Length = 1643

 Score = 59.3 bits (142), Expect(2) = 2e-13
 Identities = 34/80 (42%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
 Frame = -3

Query: 246  VKYKRIKIMLSIV-FFNLELEKLAVKIVFLHGDLHKAIYIKQPPDFEVKGKENFFCXXXX 70
            VK+K I+++L++V  FNLEL++L VK  FLHG+L + IY+KQP  F    K +  C    
Sbjct: 1204 VKHKSIRVLLAMVSVFNLELDQLDVKTAFLHGNLEEEIYMKQPEGFVDSEKSDHVCFLKK 1263

Query: 69   XXXXXXXSPI*SYIRFDTFI 10
                   SP   Y RFD F+
Sbjct: 1264 SLYGLKQSPRQWYKRFDAFM 1283



 Score = 41.6 bits (96), Expect(2) = 2e-13
 Identities = 19/33 (57%), Positives = 25/33 (75%)
 Frame = -2

Query: 385  KLIDCK*IFKIKESNYENEPTRFKVRLVAKCFS 287
            K +DCK +FKIK+   E+EP ++K RLVAK FS
Sbjct: 1169 KPVDCKWLFKIKDGISEDEPPKYKSRLVAKVFS 1201


>gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1278

 Score = 60.1 bits (144), Expect(2) = 3e-13
 Identities = 37/86 (43%), Positives = 50/86 (58%), Gaps = 2/86 (2%)
 Frame = -3

Query: 261  NIFS-FVKYKRIKIMLSIV-FFNLELEKLAVKIVFLHGDLHKAIYIKQPPDFEVKGKENF 88
            ++FS  VK+  I+   SIV   +LELE+L VK  FLHG+L + IY+ QP  F V GKE++
Sbjct: 889  DVFSPVVKHSSIRTFFSIVAMHDLELEQLDVKTAFLHGELEEEIYMDQPEGFIVPGKEDY 948

Query: 87   FCXXXXXXXXXXXSPI*SYIRFDTFI 10
             C           SP   Y RFD+F+
Sbjct: 949  VCKLKRSLYGLKQSPRQWYKRFDSFM 974



 Score = 40.4 bits (93), Expect(2) = 3e-13
 Identities = 23/40 (57%), Positives = 27/40 (67%)
 Frame = -2

Query: 403 VPKSKHKLIDCK*IFKIKESNYENEPTRFKVRLVAKCFSR 284
           +PK K K + CK IFK KE    +EP RFK RLVAK FS+
Sbjct: 843 LPKQK-KPVRCKWIFKRKEGLSPSEPPRFKARLVAKGFSQ 881


>gb|AAL91607.1|AC099400_13 Putative pol polyprotein [Oryza sativa Japonica Group]
           gi|18542925|gb|AAL75759.1| Putative pol polyprotein
           [Oryza sativa Japonica Group] gi|31429763|gb|AAP51772.1|
           retrotransposon protein, putative, Ty1-copia subclass
           [Oryza sativa Japonica Group]
          Length = 1005

 Score = 58.9 bits (141), Expect(2) = 1e-12
 Identities = 37/86 (43%), Positives = 48/86 (55%), Gaps = 2/86 (2%)
 Frame = -3

Query: 261 NIFS-FVKYKRIKIMLSIV-FFNLELEKLAVKIVFLHGDLHKAIYIKQPPDFEVKGKENF 88
           ++FS  VK+  I+   SIV   +LELE+L VK  FLHG+L + IY+ QP  F V GKE +
Sbjct: 573 DVFSPVVKHSSIRTFFSIVAMHDLELEQLDVKTAFLHGELEEEIYMDQPEGFIVPGKEGY 632

Query: 87  FCXXXXXXXXXXXSPI*SYIRFDTFI 10
            C           SP   Y RFD F+
Sbjct: 633 VCKLKRSFYGLKQSPRQWYKRFDLFM 658



 Score = 39.3 bits (90), Expect(2) = 1e-12
 Identities = 22/40 (55%), Positives = 27/40 (67%)
 Frame = -2

Query: 403 VPKSKHKLIDCK*IFKIKESNYENEPTRFKVRLVAKCFSR 284
           +PK K K + CK IFK KE    +EP RFK +LVAK FS+
Sbjct: 527 LPKQK-KPVRCKWIFKRKEGLSPSEPPRFKAKLVAKGFSQ 565


>emb|CAE03834.3| OSJNBb0013J13.11 [Oryza sativa Japonica Group]
          Length = 576

 Score = 57.4 bits (137), Expect(2) = 1e-12
 Identities = 36/86 (41%), Positives = 49/86 (56%), Gaps = 2/86 (2%)
 Frame = -3

Query: 261 NIFS-FVKYKRIKIMLSIVFFN-LELEKLAVKIVFLHGDLHKAIYIKQPPDFEVKGKENF 88
           ++FS  VK+  I+   SIV  + LEL++L VK  FLHG+L   IY+ QP  F V GKE++
Sbjct: 222 DVFSPVVKHSSIRTFFSIVAMDDLELKQLDVKTTFLHGELEDEIYMDQPEGFIVPGKEDY 281

Query: 87  FCXXXXXXXXXXXSPI*SYIRFDTFI 10
            C           SP   Y RFD+F+
Sbjct: 282 VCKLKRSLYGLKQSPRQWYKRFDSFM 307



 Score = 40.8 bits (94), Expect(2) = 1e-12
 Identities = 23/40 (57%), Positives = 27/40 (67%)
 Frame = -2

Query: 403 VPKSKHKLIDCK*IFKIKESNYENEPTRFKVRLVAKCFSR 284
           +PK K K + CK IFK KE    +EP RFK RLVAK FS+
Sbjct: 176 LPKQK-KPVHCKWIFKRKEGLSPSEPPRFKARLVAKGFSQ 214


>gb|ABA99474.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 983

 Score = 61.6 bits (148), Expect(2) = 2e-12
 Identities = 37/86 (43%), Positives = 51/86 (59%), Gaps = 2/86 (2%)
 Frame = -3

Query: 261 NIFS-FVKYKRIKIMLSIV-FFNLELEKLAVKIVFLHGDLHKAIYIKQPPDFEVKGKENF 88
           ++FS  VK+  I+ +LSIV   + ELE++ VK  FLHG+L + IY++QP  F V GKEN 
Sbjct: 641 DVFSPIVKHSSIRTLLSIVAMHDYELEQMDVKTAFLHGELEEDIYMEQPEGFVVPGKENL 700

Query: 87  FCXXXXXXXXXXXSPI*SYIRFDTFI 10
            C           SP   Y RFD+F+
Sbjct: 701 VCRLKKSLYGLKQSPRQWYKRFDSFM 726



 Score = 36.2 bits (82), Expect(2) = 2e-12
 Identities = 21/44 (47%), Positives = 28/44 (63%)
 Frame = -2

Query: 403 VPKSKHKLIDCK*IFKIKESNYENEPTRFKVRLVAKCFSRKKSL 272
           +PK K K I CK IFK KE    ++  R+K RLVAK +S+  S+
Sbjct: 595 LPKEK-KSIRCKWIFKRKEGMSPSDEARYKARLVAKGYSQIPSI 637


>gb|ABA96718.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1131

 Score = 58.9 bits (141), Expect(2) = 3e-12
 Identities = 37/86 (43%), Positives = 49/86 (56%), Gaps = 2/86 (2%)
 Frame = -3

Query: 261  NIFS-FVKYKRIKIMLSIV-FFNLELEKLAVKIVFLHGDLHKAIYIKQPPDFEVKGKENF 88
            ++FS  VK+  I+   SIV   +LELE+L VK  FLHG+L   IY+ QP  F V GKE++
Sbjct: 780  DVFSPVVKHSSIRTFFSIVAMHDLELEQLDVKTTFLHGELEVEIYMDQPEGFIVPGKEDY 839

Query: 87   FCXXXXXXXXXXXSPI*SYIRFDTFI 10
             C           SP   Y RFD+F+
Sbjct: 840  VCKLKRSLDGLKQSPRQWYKRFDSFM 865



 Score = 38.1 bits (87), Expect(2) = 3e-12
 Identities = 22/40 (55%), Positives = 26/40 (65%)
 Frame = -2

Query: 403 VPKSKHKLIDCK*IFKIKESNYENEPTRFKVRLVAKCFSR 284
           +PK K K + CK IFK KE    +EP RFK  LVAK FS+
Sbjct: 734 LPKQK-KPVRCKWIFKRKEGLSPSEPPRFKATLVAKGFSQ 772


>emb|CAN80304.1| hypothetical protein VITISV_017821 [Vitis vinifera]
          Length = 939

 Score = 59.3 bits (142), Expect(3) = 4e-12
 Identities = 36/85 (42%), Positives = 51/85 (60%), Gaps = 2/85 (2%)
 Frame = -3

Query: 258 IFS-FVKYKRIKIMLSIV-FFNLELEKLAVKIVFLHGDLHKAIYIKQPPDFEVKGKENFF 85
           IFS  VK+  I+++L++V  +NLEL ++ V   FLHG+L + I+++QP  F VKGKEN  
Sbjct: 542 IFSPMVKHTSIRVLLALVSLWNLELXQMDVNRAFLHGELEEEIFMQQPKGFIVKGKENQV 601

Query: 84  CXXXXXXXXXXXSPI*SYIRFDTFI 10
           C           SP   Y RFD F+
Sbjct: 602 CLLKRSLYGLKQSPRQWYKRFDKFM 626



 Score = 34.3 bits (77), Expect(3) = 4e-12
 Identities = 19/46 (41%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
 Frame = -2

Query: 406 LVPKSKH-KLIDCK*IFKIKESNYENEPTRFKVRLVAKCFSRKKSL 272
           LV K K  K++ CK +FK K      EP RFK  LVAK +++++ +
Sbjct: 492 LVDKPKGCKVVGCKWVFKKKLGIPHVEPERFKATLVAKAYTQREGM 537



 Score = 22.3 bits (46), Expect(3) = 4e-12
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -1

Query: 299 KMFFTKEVIDFIEIFSPL 246
           K +  +E +DF EIFSP+
Sbjct: 529 KAYTQREGMDFNEIFSPM 546


>gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1241

 Score = 61.2 bits (147), Expect(2) = 4e-12
 Identities = 37/86 (43%), Positives = 51/86 (59%), Gaps = 2/86 (2%)
 Frame = -3

Query: 261  NIFS-FVKYKRIKIMLSIV-FFNLELEKLAVKIVFLHGDLHKAIYIKQPPDFEVKGKENF 88
            ++FS  VK+  I+ +LSIV   + ELE++ VK  FLHG+L + IY++QP  F V GKEN 
Sbjct: 808  DVFSPVVKHSSIRTLLSIVAMHDYELEQMDVKTAFLHGELEEDIYMEQPEGFVVPGKENL 867

Query: 87   FCXXXXXXXXXXXSPI*SYIRFDTFI 10
             C           SP   Y RFD+F+
Sbjct: 868  VCRLKKSLYGLKQSPRQWYKRFDSFM 893



 Score = 35.0 bits (79), Expect(2) = 4e-12
 Identities = 20/40 (50%), Positives = 26/40 (65%)
 Frame = -2

Query: 403 VPKSKHKLIDCK*IFKIKESNYENEPTRFKVRLVAKCFSR 284
           +PK K K I CK IFK KE    ++  R+K RLVAK +S+
Sbjct: 762 LPKEK-KPIRCKWIFKRKEGMSPSDEARYKARLVAKGYSQ 800


>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group] gi|77548751|gb|ABA91548.1|
            retrotransposon protein, putative, Ty1-copia subclass
            [Oryza sativa Japonica Group]
          Length = 2340

 Score = 61.2 bits (147), Expect(2) = 6e-12
 Identities = 37/86 (43%), Positives = 51/86 (59%), Gaps = 2/86 (2%)
 Frame = -3

Query: 261  NIFS-FVKYKRIKIMLSIV-FFNLELEKLAVKIVFLHGDLHKAIYIKQPPDFEVKGKENF 88
            ++FS  VK+  I+ +LSIV   + ELE++ VK  FLHG+L + IY++QP  F V GKEN 
Sbjct: 1106 DVFSPVVKHSSIRTLLSIVAMHDYELEQMDVKTAFLHGELEEDIYMEQPKGFVVPGKENL 1165

Query: 87   FCXXXXXXXXXXXSPI*SYIRFDTFI 10
             C           SP   Y RFD+F+
Sbjct: 1166 VCRLKKSLYGLKQSPRQWYKRFDSFM 1191



 Score = 34.7 bits (78), Expect(2) = 6e-12
 Identities = 19/40 (47%), Positives = 26/40 (65%)
 Frame = -2

Query: 403  VPKSKHKLIDCK*IFKIKESNYENEPTRFKVRLVAKCFSR 284
            +PK K K I CK IFK KE    ++  R+K RL+AK +S+
Sbjct: 1060 LPKEK-KPIRCKWIFKRKEGISSSDEARYKARLIAKGYSQ 1098


>emb|CAJ86151.1| H0413E07.4 [Oryza sativa Indica Group]
          Length = 1205

 Score = 61.6 bits (148), Expect(2) = 8e-12
 Identities = 38/86 (44%), Positives = 51/86 (59%), Gaps = 2/86 (2%)
 Frame = -3

Query: 261  NIFS-FVKYKRIKIMLSIV-FFNLELEKLAVKIVFLHGDLHKAIYIKQPPDFEVKGKENF 88
            +IFS  VK+  I+ +LSIV   + ELE++ VK  FLHG+L + IY++QP  F V GKEN 
Sbjct: 825  DIFSPVVKHSSIRTLLSIVAMHDYELEQMDVKTAFLHGELEEDIYMEQPEGFVVPGKENL 884

Query: 87   FCXXXXXXXXXXXSPI*SYIRFDTFI 10
             C           SP   Y RFD+F+
Sbjct: 885  VCRLKKSLYGLKQSPRQWYKRFDSFM 910



 Score = 33.9 bits (76), Expect(2) = 8e-12
 Identities = 19/40 (47%), Positives = 27/40 (67%)
 Frame = -2

Query: 403 VPKSKHKLIDCK*IFKIKESNYENEPTRFKVRLVAKCFSR 284
           +PK ++K I CK IFK KE    ++  R+K RLVAK +S+
Sbjct: 779 LPK-ENKPIRCKWIFKRKEGMSPSDEARYKARLVAKGYSQ 817


>emb|CAJ86192.1| H0306F03.15 [Oryza sativa Indica Group]
          Length = 1037

 Score = 61.6 bits (148), Expect(2) = 8e-12
 Identities = 38/86 (44%), Positives = 51/86 (59%), Gaps = 2/86 (2%)
 Frame = -3

Query: 261 NIFS-FVKYKRIKIMLSIV-FFNLELEKLAVKIVFLHGDLHKAIYIKQPPDFEVKGKENF 88
           +IFS  VK+  I+ +LSIV   + ELE++ VK  FLHG+L + IY++QP  F V GKEN 
Sbjct: 657 DIFSPVVKHSSIRTLLSIVAMHDYELEQMDVKTAFLHGELEEDIYMEQPEGFVVPGKENL 716

Query: 87  FCXXXXXXXXXXXSPI*SYIRFDTFI 10
            C           SP   Y RFD+F+
Sbjct: 717 VCRLKKSLYGLKQSPRQWYKRFDSFM 742



 Score = 33.9 bits (76), Expect(2) = 8e-12
 Identities = 19/40 (47%), Positives = 27/40 (67%)
 Frame = -2

Query: 403 VPKSKHKLIDCK*IFKIKESNYENEPTRFKVRLVAKCFSR 284
           +PK ++K I CK IFK KE    ++  R+K RLVAK +S+
Sbjct: 611 LPK-ENKPIRCKWIFKRKEGMSPSDEARYKARLVAKGYSQ 649


>gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group] gi|77549942|gb|ABA92739.1|
            retrotransposon protein, putative, Ty1-copia subclass
            [Oryza sativa Japonica Group]
          Length = 1373

 Score = 56.6 bits (135), Expect(2) = 1e-11
 Identities = 37/86 (43%), Positives = 49/86 (56%), Gaps = 2/86 (2%)
 Frame = -3

Query: 261  NIFS-FVKYKRIKIMLSIVF-FNLELEKLAVKIVFLHGDLHKAIYIKQPPDFEVKGKENF 88
            ++FS  VK+  I+  LSIV   +LELE+L VK  FLHG+L + IY+ QP  F V GKE +
Sbjct: 900  DVFSPVVKHSSIRTFLSIVASHDLELEQLDVKTAFLHGELEEDIYMDQPEGFIVPGKEKY 959

Query: 87   FCXXXXXXXXXXXSPI*SYIRFDTFI 10
             C           SP     RFD+F+
Sbjct: 960  VCKLKRSLYGLKQSPRQWNKRFDSFM 985



 Score = 38.1 bits (87), Expect(2) = 1e-11
 Identities = 20/40 (50%), Positives = 27/40 (67%)
 Frame = -2

Query: 403 VPKSKHKLIDCK*IFKIKESNYENEPTRFKVRLVAKCFSR 284
           +PK K K I CK IFK KE    +EP ++K RLVA+ +S+
Sbjct: 854 LPKKK-KTISCKWIFKRKEGLSSSEPPKYKARLVARGYSQ 892


>gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1333

 Score = 56.6 bits (135), Expect(2) = 1e-11
 Identities = 37/86 (43%), Positives = 49/86 (56%), Gaps = 2/86 (2%)
 Frame = -3

Query: 261  NIFS-FVKYKRIKIMLSIVF-FNLELEKLAVKIVFLHGDLHKAIYIKQPPDFEVKGKENF 88
            ++FS  VK+  I+  LSIV   +LELE+L VK  FLHG+L + IY+ QP  F V GKE +
Sbjct: 900  DVFSPVVKHSSIRTFLSIVASHDLELEQLDVKTAFLHGELEEDIYMDQPEGFIVPGKEKY 959

Query: 87   FCXXXXXXXXXXXSPI*SYIRFDTFI 10
             C           SP     RFD+F+
Sbjct: 960  VCKLKRSLYGLKQSPRQWNKRFDSFM 985



 Score = 38.1 bits (87), Expect(2) = 1e-11
 Identities = 20/40 (50%), Positives = 27/40 (67%)
 Frame = -2

Query: 403 VPKSKHKLIDCK*IFKIKESNYENEPTRFKVRLVAKCFSR 284
           +PK K K I CK IFK KE    +EP ++K RLVA+ +S+
Sbjct: 854 LPKKK-KTISCKWIFKRKEGLSSSEPPKYKARLVARGYSQ 892


>gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1333

 Score = 56.6 bits (135), Expect(2) = 1e-11
 Identities = 37/86 (43%), Positives = 49/86 (56%), Gaps = 2/86 (2%)
 Frame = -3

Query: 261  NIFS-FVKYKRIKIMLSIVF-FNLELEKLAVKIVFLHGDLHKAIYIKQPPDFEVKGKENF 88
            ++FS  VK+  I+  LSIV   +LELE+L VK  FLHG+L + IY+ QP  F V GKE +
Sbjct: 900  DVFSPVVKHSSIRTFLSIVASHDLELEQLDVKTAFLHGELEEDIYMDQPEGFIVPGKEKY 959

Query: 87   FCXXXXXXXXXXXSPI*SYIRFDTFI 10
             C           SP     RFD+F+
Sbjct: 960  VCKLKRSLYGLKQSPRQWNKRFDSFM 985



 Score = 38.1 bits (87), Expect(2) = 1e-11
 Identities = 20/40 (50%), Positives = 27/40 (67%)
 Frame = -2

Query: 403 VPKSKHKLIDCK*IFKIKESNYENEPTRFKVRLVAKCFSR 284
           +PK K K I CK IFK KE    +EP ++K RLVA+ +S+
Sbjct: 854 LPKKK-KTISCKWIFKRKEGLSSSEPPKYKARLVARGYSQ 892


>gb|AAT44282.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1243

 Score = 59.7 bits (143), Expect(2) = 1e-11
 Identities = 36/86 (41%), Positives = 50/86 (58%), Gaps = 2/86 (2%)
 Frame = -3

Query: 261  NIFS-FVKYKRIKIMLSIV-FFNLELEKLAVKIVFLHGDLHKAIYIKQPPDFEVKGKENF 88
            ++FS  VK+  I+ +L IV   + ELE++ VK  FLHG+L + IY++QP  F V GKEN 
Sbjct: 871  DVFSPVVKHSSIRTLLGIVAMHDYELEQMNVKTAFLHGELEEDIYMEQPEGFVVPGKENL 930

Query: 87   FCXXXXXXXXXXXSPI*SYIRFDTFI 10
             C           SP   Y RFD+F+
Sbjct: 931  VCRLKKSLYGLKQSPRQWYKRFDSFM 956



 Score = 35.0 bits (79), Expect(2) = 1e-11
 Identities = 20/40 (50%), Positives = 26/40 (65%)
 Frame = -2

Query: 403 VPKSKHKLIDCK*IFKIKESNYENEPTRFKVRLVAKCFSR 284
           +PK K K I CK IFK KE    ++  R+K RLVAK +S+
Sbjct: 825 LPKEK-KPIRCKWIFKRKEGMSPSDEARYKARLVAKGYSQ 863


>gb|AAW22873.1| putative polyprotein [Solanum lycopersicum]
          Length = 687

 Score = 73.9 bits (180), Expect(2) = 2e-11
 Identities = 39/83 (46%), Positives = 52/83 (62%), Gaps = 1/83 (1%)
 Frame = -3

Query: 246 VKYKRIKIMLSIVF-FNLELEKLAVKIVFLHGDLHKAIYIKQPPDFEVKGKENFFCXXXX 70
           VK   I+++L +    NLELE+L VK  FLHGDLH+ IY++QP  FEVKGKENF C    
Sbjct: 259 VKMTSIRMILGLATCLNLELEQLDVKTAFLHGDLHEEIYMEQPEGFEVKGKENFVCKLKK 318

Query: 69  XXXXXXXSPI*SYIRFDTFIQNS 1
                  +P   Y +FD+F+ N+
Sbjct: 319 SLYGLKQAPRQWYHKFDSFMSNN 341



 Score = 20.4 bits (41), Expect(2) = 2e-11
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -1

Query: 284 KEVIDFIEIFSPLSNIRESR 225
           K+ IDF EIF+P+  +   R
Sbjct: 246 KKGIDFDEIFAPVVKMTSIR 265


>emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group]
          Length = 1335

 Score = 56.6 bits (135), Expect(2) = 2e-11
 Identities = 37/86 (43%), Positives = 49/86 (56%), Gaps = 2/86 (2%)
 Frame = -3

Query: 261  NIFS-FVKYKRIKIMLSIVF-FNLELEKLAVKIVFLHGDLHKAIYIKQPPDFEVKGKENF 88
            ++FS  VK+  I+  LSIV   +LELE+L VK  FLHG+L + IY+ QP  F V GKE +
Sbjct: 902  DVFSPVVKHSSIRTFLSIVASHDLELEQLDVKTAFLHGELEEDIYMDQPEGFIVPGKEKY 961

Query: 87   FCXXXXXXXXXXXSPI*SYIRFDTFI 10
             C           SP     RFD+F+
Sbjct: 962  VCKLKRSLYGLKQSPRQWNKRFDSFM 987



 Score = 37.4 bits (85), Expect(2) = 2e-11
 Identities = 20/40 (50%), Positives = 28/40 (70%)
 Frame = -2

Query: 403 VPKSKHKLIDCK*IFKIKESNYENEPTRFKVRLVAKCFSR 284
           +PK K K I CK IFK KE+   +EP ++K RLVA+ +S+
Sbjct: 856 LPKKK-KTISCKWIFKRKEALSLSEPPKYKARLVARGYSQ 894