BLASTX nr result
ID: Catharanthus23_contig00022750
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Catharanthus23_contig00022750
(1137 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAG09097.1|AC009323_8 Putative retroelement polyprotein [Arab... 97 1e-32
dbj|BAA97287.1| retroelement pol polyprotein-like [Arabidopsis t... 90 4e-32
emb|CAN82073.1| hypothetical protein VITISV_036538 [Vitis vinifera] 98 5e-32
gb|AAC67205.1| putative retroelement pol polyprotein [Arabidopsi... 89 4e-31
emb|CAN67762.1| hypothetical protein VITISV_040650 [Vitis vinifera] 95 1e-30
dbj|BAB10837.1| retroelement pol polyprotein-like [Arabidopsis t... 90 4e-30
gb|AAD23883.1| putative retroelement pol polyprotein [Arabidopsi... 92 4e-30
gb|AAB87099.1| putative retroelement pol polyprotein [Arabidopsi... 88 8e-30
gb|AAM98191.1| unknown protein [Arabidopsis thaliana] gi|3860380... 88 8e-30
gb|AAD19784.1| putative retroelement pol polyprotein [Arabidopsi... 89 2e-29
gb|AAD24600.1| putative retroelement pol polyprotein [Arabidopsi... 83 2e-29
gb|AAG50751.1|AC079733_19 polyprotein, putative [Arabidopsis tha... 90 3e-29
dbj|BAB10743.1| retroelement pol polyprotein-like [Arabidopsis t... 90 3e-29
emb|CAA18107.1| LTR retrotransposon like protein [Arabidopsis th... 90 3e-29
emb|CAN65820.1| hypothetical protein VITISV_042324 [Vitis vinifera] 97 1e-28
emb|CAN73437.1| hypothetical protein VITISV_031733 [Vitis vinifera] 93 3e-28
emb|CAN60829.1| hypothetical protein VITISV_012059 [Vitis vinifera] 99 7e-28
gb|AAG51258.1|AC025782_3 Ty1/copia-element polyprotein [Arabidop... 81 1e-27
gb|AAP21414.1| putative polyprotein [Oryza sativa Japonica Group... 92 1e-26
ref|XP_006365584.1| PREDICTED: uncharacterized protein LOC102598... 88 2e-26
>gb|AAG09097.1|AC009323_8 Putative retroelement polyprotein [Arabidopsis thaliana]
Length = 1486
Score = 96.7 bits (239), Expect(2) = 1e-32
Identities = 46/83 (55%), Positives = 60/83 (72%)
Frame = -1
Query: 468 HWPDARRSEIDALARNKTWNITTLPPEKKASGCK*VYKIKRKSDGSIEQYKAQLVILENT 289
HW A EI +L TW + LPP KKA GCK V+++K KSDG++E++KA+LV+L N
Sbjct: 988 HWKGAVSHEIGSLENLGTWTVEDLPPGKKALGCKWVFRLKYKSDGTLERHKARLVVLGNN 1047
Query: 288 *VKGLDYTKTFAPVAKMVTI*TF 220
+GLDYT+TFAPVAKMVT+ F
Sbjct: 1048 QTEGLDYTETFAPVAKMVTVRAF 1070
Score = 71.6 bits (174), Expect(2) = 1e-32
Identities = 34/64 (53%), Positives = 41/64 (64%)
Frame = -2
Query: 200 LEMEIHKMDVHNVFLHDNLHEEVYMKLPPXXXXXXXXXXXKLRMSLHGFKQTP*YWFEKL 21
L+ E+H+MDVHN FLH +L EEVYM+ PP +LR SL+G KQ P WF KL
Sbjct: 1077 LDWEVHQMDVHNAFLHGDLDEEVYMQFPPGFRTGDKTKVCRLRKSLYGLKQAPRCWFAKL 1136
Query: 20 TGAL 9
T AL
Sbjct: 1137 TSAL 1140
>dbj|BAA97287.1| retroelement pol polyprotein-like [Arabidopsis thaliana]
Length = 1491
Score = 89.7 bits (221), Expect(3) = 4e-32
Identities = 44/92 (47%), Positives = 61/92 (66%)
Frame = -1
Query: 483 SLSIPHWPDARRSEIDALARNKTWNITTLPPEKKASGCK*VYKIKRKSDGSIEQYKAQLV 304
++ + W DA E+DAL NKTW+I LP K A G + VYK K +DG++E+YKA+LV
Sbjct: 988 AVKVKVWNDAMYKEVDALEVNKTWDIVDLPTGKVAIGSQWVYKTKFNADGTVERYKARLV 1047
Query: 303 ILENT*VKGLDYTKTFAPVAKMVTI*TFYSLL 208
+ N ++G DYT+TFAPV KM T+ T L+
Sbjct: 1048 VQGNNQIEGEDYTETFAPVVKMTTVRTLLRLV 1079
Score = 70.1 bits (170), Expect(3) = 4e-32
Identities = 33/63 (52%), Positives = 42/63 (66%)
Frame = -2
Query: 197 EMEIHKMDVHNVFLHDNLHEEVYMKLPPXXXXXXXXXXXKLRMSLHGFKQTP*YWFEKLT 18
+ E+++MDVHN FLH +L EEVYMKLPP +LR SL+G KQ P WF+KL+
Sbjct: 1083 QWEVYQMDVHNAFLHGDLEEEVYMKLPPGFRHSHPDKVCRLRKSLYGLKQAPRCWFKKLS 1142
Query: 17 GAL 9
AL
Sbjct: 1143 DAL 1145
Score = 26.9 bits (58), Expect(3) = 4e-32
Identities = 14/22 (63%), Positives = 14/22 (63%)
Frame = -3
Query: 613 SSSSLGICSYPLTHYIFYEKFS 548
SSS G YPLT YIF E FS
Sbjct: 945 SSSIQGNSQYPLTDYIFDECFS 966
>emb|CAN82073.1| hypothetical protein VITISV_036538 [Vitis vinifera]
Length = 1157
Score = 98.2 bits (243), Expect(3) = 5e-32
Identities = 51/90 (56%), Positives = 63/90 (70%)
Frame = -1
Query: 465 WPDARRSEIDALARNKTWNITTLPPEKKASGCK*VYKIKRKSDGSIEQYKAQLVILENT* 286
W +A R EI AL N+TW + LP EKKA G K VYKIK SDGSIE+ K +LVIL N
Sbjct: 705 WREAMRKEIQALEDNETWIVENLPLEKKAIGSKWVYKIKYNSDGSIERCKTRLVILGNKK 764
Query: 285 VKGLDYTKTFAPVAKMVTI*TFYSLLPPLG 196
V+G+DY +TFAP AKMVT+ TF +++ G
Sbjct: 765 VEGIDYNETFAPTAKMVTVQTFLAVVAMKG 794
Score = 65.1 bits (157), Expect(3) = 5e-32
Identities = 31/62 (50%), Positives = 37/62 (59%)
Frame = -2
Query: 191 EIHKMDVHNVFLHDNLHEEVYMKLPPXXXXXXXXXXXKLRMSLHGFKQTP*YWFEKLTGA 12
E+H+MDVHN FLH L EEVYM++ P LR SL+G +Q P WF KL A
Sbjct: 796 ELHQMDVHNAFLHGELDEEVYMQMSPGFASPTPGKVCGLRKSLYGLQQAPKCWFAKLVAA 855
Query: 11 LT 6
LT
Sbjct: 856 LT 857
Score = 23.1 bits (48), Expect(3) = 5e-32
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = -3
Query: 586 YPLTHYIFYEKFS 548
YPL HY+ +KFS
Sbjct: 665 YPLAHYVNCDKFS 677
>gb|AAC67205.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1413
Score = 89.4 bits (220), Expect(3) = 4e-31
Identities = 44/86 (51%), Positives = 58/86 (67%)
Frame = -1
Query: 465 WPDARRSEIDALARNKTWNITTLPPEKKASGCK*VYKIKRKSDGSIEQYKAQLVILENT* 286
W DA E+DAL NKTW+I LP K A G + VYK K +DG++E+YKA+LV+ N
Sbjct: 994 WNDAMYKEVDALEVNKTWDIVDLPTGKVAIGSQWVYKTKFNADGTVERYKARLVVQGNNQ 1053
Query: 285 VKGLDYTKTFAPVAKMVTI*TFYSLL 208
++G DYT+TFAPV KM T+ T L+
Sbjct: 1054 IEGEDYTETFAPVVKMTTVRTLLRLV 1079
Score = 70.1 bits (170), Expect(3) = 4e-31
Identities = 33/63 (52%), Positives = 42/63 (66%)
Frame = -2
Query: 197 EMEIHKMDVHNVFLHDNLHEEVYMKLPPXXXXXXXXXXXKLRMSLHGFKQTP*YWFEKLT 18
+ E+++MDVHN FLH +L EEVYMKLPP +LR SL+G KQ P WF+KL+
Sbjct: 1083 QWEVYQMDVHNAFLHGDLEEEVYMKLPPGFRHSHPDKVCRLRKSLYGLKQAPRCWFKKLS 1142
Query: 17 GAL 9
AL
Sbjct: 1143 DAL 1145
Score = 23.9 bits (50), Expect(3) = 4e-31
Identities = 13/22 (59%), Positives = 13/22 (59%)
Frame = -3
Query: 613 SSSSLGICSYPLTHYIFYEKFS 548
SSS G YPLT YI E FS
Sbjct: 945 SSSIQGNLQYPLTDYISDECFS 966
>emb|CAN67762.1| hypothetical protein VITISV_040650 [Vitis vinifera]
Length = 1316
Score = 95.1 bits (235), Expect(3) = 1e-30
Identities = 44/85 (51%), Positives = 61/85 (71%)
Frame = -1
Query: 465 WPDARRSEIDALARNKTWNITTLPPEKKASGCK*VYKIKRKSDGSIEQYKAQLVILENT* 286
W +A EI+AL N+TW + LPPEKKA GCK +YKIK +DGSIE+YKA+LV T
Sbjct: 819 WREAMAKEIEALETNQTWKVVDLPPEKKAIGCKWIYKIKYNADGSIERYKARLVAQGFTQ 878
Query: 285 VKGLDYTKTFAPVAKMVTI*TFYSL 211
++G+DY + F+PVAKM ++ F ++
Sbjct: 879 IEGIDYQEXFSPVAKMTSVRCFLAV 903
Score = 62.4 bits (150), Expect(3) = 1e-30
Identities = 32/63 (50%), Positives = 39/63 (61%)
Frame = -2
Query: 191 EIHKMDVHNVFLHDNLHEEVYMKLPPXXXXXXXXXXXKLRMSLHGFKQTP*YWFEKLTGA 12
E+H+MDV+N FLH +L EEVYMKLP KL+ SL+G KQ WF KLT A
Sbjct: 910 ELHQMDVNNAFLHGDLEEEVYMKLPEGFKATGKNKVCKLQKSLYGLKQASRQWFAKLTTA 969
Query: 11 LTQ 3
L +
Sbjct: 970 LKE 972
Score = 23.9 bits (50), Expect(3) = 1e-30
Identities = 13/49 (26%), Positives = 22/49 (44%), Gaps = 5/49 (10%)
Frame = -3
Query: 679 HHPQQKLIDFVCNNILGFYAVVSSSSL-----GICSYPLTHYIFYEKFS 548
H + L D++C + + S +S YP+ +Y+ Y KFS
Sbjct: 743 HKEPRHLQDYICYSARSLSTLCSKASSIQKVPSGKPYPIANYVTYTKFS 791
>dbj|BAB10837.1| retroelement pol polyprotein-like [Arabidopsis thaliana]
Length = 1462
Score = 89.7 bits (221), Expect(2) = 4e-30
Identities = 43/83 (51%), Positives = 60/83 (72%)
Frame = -1
Query: 468 HWPDARRSEIDALARNKTWNITTLPPEKKASGCK*VYKIKRKSDGSIEQYKAQLVILENT 289
+W A EI +L TW + LPP KKA GCK V+++K KSDG++E++KA+LV+L N
Sbjct: 950 NWRCAVSDEIVSLENLGTWTVEDLPPGKKALGCKWVFRLKYKSDGTLERHKARLVVLGNK 1009
Query: 288 *VKGLDYTKTFAPVAKMVTI*TF 220
+G+DY++TFAPVAKMVT+ F
Sbjct: 1010 QTEGIDYSETFAPVAKMVTVRAF 1032
Score = 69.7 bits (169), Expect(2) = 4e-30
Identities = 33/64 (51%), Positives = 41/64 (64%)
Frame = -2
Query: 200 LEMEIHKMDVHNVFLHDNLHEEVYMKLPPXXXXXXXXXXXKLRMSLHGFKQTP*YWFEKL 21
L+ E+H+MDVHN FLH +L EEVY+K PP +LR +L+G KQ P WF KL
Sbjct: 1039 LDWEVHQMDVHNAFLHGDLDEEVYIKFPPGFGSDDNRKVCRLRKALYGLKQAPRCWFAKL 1098
Query: 20 TGAL 9
T AL
Sbjct: 1099 TTAL 1102
>gb|AAD23883.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1156
Score = 92.4 bits (228), Expect(2) = 4e-30
Identities = 48/92 (52%), Positives = 61/92 (66%)
Frame = -1
Query: 483 SLSIPHWPDARRSEIDALARNKTWNITTLPPEKKASGCK*VYKIKRKSDGSIEQYKAQLV 304
++ I W DA E+DAL NKTW+I LPP K A G + VYK K +DGSIE+YKA+LV
Sbjct: 645 AVRIKVWNDAMFKEVDALEINKTWDIVDLPPGKVAIGSQWVYKTKYNADGSIERYKARLV 704
Query: 303 ILENT*VKGLDYTKTFAPVAKMVTI*TFYSLL 208
+ N V+G DY +TFAPV KM T+ T L+
Sbjct: 705 VQGNKQVEGEDYNETFAPVVKMTTVRTLLRLV 736
Score = 67.0 bits (162), Expect(2) = 4e-30
Identities = 32/63 (50%), Positives = 42/63 (66%)
Frame = -2
Query: 197 EMEIHKMDVHNVFLHDNLHEEVYMKLPPXXXXXXXXXXXKLRMSLHGFKQTP*YWFEKLT 18
+ E+++MDV+N FLH +L EEVYMKLPP +LR SL+G KQ P WF+KL+
Sbjct: 740 QWEVYQMDVNNAFLHGDLDEEVYMKLPPGFRHSHPDKVCRLRKSLYGLKQAPRCWFKKLS 799
Query: 17 GAL 9
AL
Sbjct: 800 DAL 802
>gb|AAB87099.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1496
Score = 88.2 bits (217), Expect(2) = 8e-30
Identities = 43/91 (47%), Positives = 63/91 (69%)
Frame = -1
Query: 483 SLSIPHWPDARRSEIDALARNKTWNITTLPPEKKASGCK*VYKIKRKSDGSIEQYKAQLV 304
++ I W +A EIDAL N TW+IT LP KKA K VYK+K SDG++E++KA+LV
Sbjct: 993 AILIKEWCEAMSKEIDALEANHTWDITDLPHGKKAISSKWVYKLKYNSDGTLERHKARLV 1052
Query: 303 ILENT*VKGLDYTKTFAPVAKMVTI*TFYSL 211
++ N +G+D+ +TFAPVAK+ T+ T ++
Sbjct: 1053 VMGNHQKEGVDFKETFAPVAKLTTVRTILAV 1083
Score = 70.5 bits (171), Expect(2) = 8e-30
Identities = 33/63 (52%), Positives = 41/63 (65%)
Frame = -2
Query: 197 EMEIHKMDVHNVFLHDNLHEEVYMKLPPXXXXXXXXXXXKLRMSLHGFKQTP*YWFEKLT 18
+ E+H+MDVHN FLH +L EEVYM+LPP +LR SL+G KQ P WF KL+
Sbjct: 1088 DWEVHQMDVHNAFLHGDLEEEVYMRLPPGFKCSDPSKVCRLRKSLYGLKQAPRCWFSKLS 1147
Query: 17 GAL 9
AL
Sbjct: 1148 TAL 1150
>gb|AAM98191.1| unknown protein [Arabidopsis thaliana] gi|38603804|gb|AAR24647.1|
At2g23330 [Arabidopsis thaliana]
gi|110742535|dbj|BAE99183.1| putative retroelement pol
polyprotein [Arabidopsis thaliana]
Length = 776
Score = 88.2 bits (217), Expect(2) = 8e-30
Identities = 43/91 (47%), Positives = 63/91 (69%)
Frame = -1
Query: 483 SLSIPHWPDARRSEIDALARNKTWNITTLPPEKKASGCK*VYKIKRKSDGSIEQYKAQLV 304
++ I W +A EIDAL N TW+IT LP KKA K VYK+K SDG++E++KA+LV
Sbjct: 273 AILIKEWCEAMSKEIDALEANHTWDITDLPHGKKAISSKWVYKLKYNSDGTLERHKARLV 332
Query: 303 ILENT*VKGLDYTKTFAPVAKMVTI*TFYSL 211
++ N +G+D+ +TFAPVAK+ T+ T ++
Sbjct: 333 VMGNHQKEGVDFKETFAPVAKLTTVRTILAV 363
Score = 70.5 bits (171), Expect(2) = 8e-30
Identities = 33/63 (52%), Positives = 41/63 (65%)
Frame = -2
Query: 197 EMEIHKMDVHNVFLHDNLHEEVYMKLPPXXXXXXXXXXXKLRMSLHGFKQTP*YWFEKLT 18
+ E+H+MDVHN FLH +L EEVYM+LPP +LR SL+G KQ P WF KL+
Sbjct: 368 DWEVHQMDVHNAFLHGDLEEEVYMRLPPGFKCSDPSKVCRLRKSLYGLKQAPRCWFSKLS 427
Query: 17 GAL 9
AL
Sbjct: 428 TAL 430
>gb|AAD19784.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1501
Score = 88.6 bits (218), Expect(2) = 2e-29
Identities = 44/87 (50%), Positives = 60/87 (68%)
Frame = -1
Query: 483 SLSIPHWPDARRSEIDALARNKTWNITTLPPEKKASGCK*VYKIKRKSDGSIEQYKAQLV 304
++ I W DA +E+DAL NKTW+I LPP K A G + V+K K SDG++E+YKA+LV
Sbjct: 998 AVQIKVWNDAMFTEVDALEINKTWDIVDLPPGKVAIGSQWVFKTKYNSDGTVERYKARLV 1057
Query: 303 ILENT*VKGLDYTKTFAPVAKMVTI*T 223
+ N V+G DY +TFAPV +M T+ T
Sbjct: 1058 VQGNKQVEGEDYKETFAPVVRMTTVRT 1084
Score = 68.9 bits (167), Expect(2) = 2e-29
Identities = 32/63 (50%), Positives = 42/63 (66%)
Frame = -2
Query: 197 EMEIHKMDVHNVFLHDNLHEEVYMKLPPXXXXXXXXXXXKLRMSLHGFKQTP*YWFEKLT 18
+ E+++MDVHN FLH +L EEVYMKLPP +LR SL+G KQ P WF+KL+
Sbjct: 1093 QWEVYQMDVHNAFLHGDLEEEVYMKLPPGFRHSHPDKVCRLRKSLYGLKQAPRCWFKKLS 1152
Query: 17 GAL 9
+L
Sbjct: 1153 DSL 1155
>gb|AAD24600.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1333
Score = 83.2 bits (204), Expect(2) = 2e-29
Identities = 42/74 (56%), Positives = 51/74 (68%)
Frame = -1
Query: 441 IDALARNKTWNITTLPPEKKASGCK*VYKIKRKSDGSIEQYKAQLVILENT*VKGLDYTK 262
IDA N TW I LPP K+A G + VYK+K SDGS+E+YKA+LV L N +G DY +
Sbjct: 844 IDAQEENHTWTIEDLPPGKRAIGSQWVYKVKHNSDGSVERYKARLVALGNKQKEGEDYGE 903
Query: 261 TFAPVAKMVTI*TF 220
TFAPVAKM T+ F
Sbjct: 904 TFAPVAKMATVRLF 917
Score = 73.9 bits (180), Expect(2) = 2e-29
Identities = 36/61 (59%), Positives = 41/61 (67%)
Frame = -2
Query: 191 EIHKMDVHNVFLHDNLHEEVYMKLPPXXXXXXXXXXXKLRMSLHGFKQTP*YWFEKLTGA 12
EIH+MDVHN FLH +L EEVYMKLPP +LR +L+G KQ P WFEKLT A
Sbjct: 927 EIHQMDVHNAFLHGDLREEVYMKLPPGFEASHPNKVCRLRKALYGLKQAPRCWFEKLTTA 986
Query: 11 L 9
L
Sbjct: 987 L 987
>gb|AAG50751.1|AC079733_19 polyprotein, putative [Arabidopsis thaliana]
Length = 1468
Score = 90.1 bits (222), Expect(2) = 3e-29
Identities = 45/82 (54%), Positives = 62/82 (75%)
Frame = -1
Query: 465 WPDARRSEIDALARNKTWNITTLPPEKKASGCK*VYKIKRKSDGSIEQYKAQLVILENT* 286
W +A +EI++L N+T++I LPP K+A G K VYKIK +SDG+IE+YKA+LV+L N
Sbjct: 971 WREAMSAEIESLRVNQTFSIVNLPPGKRALGNKWVYKIKYRSDGAIERYKARLVVLGNCQ 1030
Query: 285 VKGLDYTKTFAPVAKMVTI*TF 220
+G+DY +TFAPVAKM T+ F
Sbjct: 1031 KEGVDYDETFAPVAKMSTVRLF 1052
Score = 66.6 bits (161), Expect(2) = 3e-29
Identities = 32/65 (49%), Positives = 39/65 (60%)
Frame = -2
Query: 197 EMEIHKMDVHNVFLHDNLHEEVYMKLPPXXXXXXXXXXXKLRMSLHGFKQTP*YWFEKLT 18
+ +H+MDVHN FLH +L EEVYMKLP +L SL+G KQ P WF KL+
Sbjct: 1060 DWHVHQMDVHNAFLHGDLKEEVYMKLPQGFQCDDPSKVCRLHKSLYGLKQAPRCWFSKLS 1119
Query: 17 GALTQ 3
AL Q
Sbjct: 1120 SALKQ 1124
>dbj|BAB10743.1| retroelement pol polyprotein-like [Arabidopsis thaliana]
Length = 1109
Score = 90.1 bits (222), Expect(2) = 3e-29
Identities = 45/82 (54%), Positives = 62/82 (75%)
Frame = -1
Query: 465 WPDARRSEIDALARNKTWNITTLPPEKKASGCK*VYKIKRKSDGSIEQYKAQLVILENT* 286
W +A +EI++L N+T++I LPP K+A G K VYKIK +SDG+IE+YKA+LV+L N
Sbjct: 612 WREAMSAEIESLRVNQTFSIVNLPPGKRALGNKWVYKIKYRSDGAIERYKARLVVLGNCQ 671
Query: 285 VKGLDYTKTFAPVAKMVTI*TF 220
+G+DY +TFAPVAKM T+ F
Sbjct: 672 KEGVDYDETFAPVAKMSTVRLF 693
Score = 66.6 bits (161), Expect(2) = 3e-29
Identities = 32/65 (49%), Positives = 39/65 (60%)
Frame = -2
Query: 197 EMEIHKMDVHNVFLHDNLHEEVYMKLPPXXXXXXXXXXXKLRMSLHGFKQTP*YWFEKLT 18
+ +H+MDVHN FLH +L EEVYMKLP +L SL+G KQ P WF KL+
Sbjct: 701 DWHVHQMDVHNAFLHGDLKEEVYMKLPQGFQCDDPSKVCRLHKSLYGLKQAPRCWFSKLS 760
Query: 17 GALTQ 3
AL Q
Sbjct: 761 SALKQ 765
>emb|CAA18107.1| LTR retrotransposon like protein [Arabidopsis thaliana]
gi|7269049|emb|CAB79159.1| LTR retrotransposon like
protein [Arabidopsis thaliana]
Length = 1109
Score = 90.1 bits (222), Expect(2) = 3e-29
Identities = 45/82 (54%), Positives = 62/82 (75%)
Frame = -1
Query: 465 WPDARRSEIDALARNKTWNITTLPPEKKASGCK*VYKIKRKSDGSIEQYKAQLVILENT* 286
W +A +EI++L N+T++I LPP K+A G K VYKIK +SDG+IE+YKA+LV+L N
Sbjct: 612 WREAMSAEIESLRVNQTFSIVNLPPGKRALGNKWVYKIKYRSDGAIERYKARLVVLGNCQ 671
Query: 285 VKGLDYTKTFAPVAKMVTI*TF 220
+G+DY +TFAPVAKM T+ F
Sbjct: 672 KEGVDYDETFAPVAKMSTVRLF 693
Score = 66.6 bits (161), Expect(2) = 3e-29
Identities = 32/65 (49%), Positives = 39/65 (60%)
Frame = -2
Query: 197 EMEIHKMDVHNVFLHDNLHEEVYMKLPPXXXXXXXXXXXKLRMSLHGFKQTP*YWFEKLT 18
+ +H+MDVHN FLH +L EEVYMKLP +L SL+G KQ P WF KL+
Sbjct: 701 DWHVHQMDVHNAFLHGDLKEEVYMKLPQGFQCDDPSKVCRLHKSLYGLKQAPRCWFSKLS 760
Query: 17 GALTQ 3
AL Q
Sbjct: 761 SALKQ 765
>emb|CAN65820.1| hypothetical protein VITISV_042324 [Vitis vinifera]
Length = 1262
Score = 97.4 bits (241), Expect(2) = 1e-28
Identities = 45/88 (51%), Positives = 62/88 (70%)
Frame = -1
Query: 492 HQGSLSIPHWPDARRSEIDALARNKTWNITTLPPEKKASGCK*VYKIKRKSDGSIEQYKA 313
++ ++SIPHW A EI AL NKTW++ LPP K GCK VY++K K+DGS+E+YKA
Sbjct: 925 YKQAVSIPHWKTAMTDEIKALEHNKTWDLAILPPNKTTIGCKWVYQVKFKADGSVERYKA 984
Query: 312 QLVILENT*VKGLDYTKTFAPVAKMVTI 229
+LV T +GLD+ T++PVAKM T+
Sbjct: 985 RLVAKGYTQQEGLDFFDTYSPVAKMTTV 1012
Score = 57.4 bits (137), Expect(2) = 1e-28
Identities = 25/60 (41%), Positives = 40/60 (66%)
Frame = -2
Query: 188 IHKMDVHNVFLHDNLHEEVYMKLPPXXXXXXXXXXXKLRMSLHGFKQTP*YWFEKLTGAL 9
+H++DV+N FLH++L+E+VYM+LPP KL+ SL+G +Q W+ KL+ +L
Sbjct: 1026 LHQLDVNNAFLHEDLNEDVYMQLPPGFSTPNDPRVCKLKKSLYGLRQASRQWYSKLSSSL 1085
>emb|CAN73437.1| hypothetical protein VITISV_031733 [Vitis vinifera]
Length = 1322
Score = 93.2 bits (230), Expect(3) = 3e-28
Identities = 43/80 (53%), Positives = 60/80 (75%)
Frame = -1
Query: 468 HWPDARRSEIDALARNKTWNITTLPPEKKASGCK*VYKIKRKSDGSIEQYKAQLVILENT 289
HW +A +SE+ AL N TW++T+LP KK GC+ VYKIKR SDG+IE++KA+LV T
Sbjct: 846 HWQEAMQSELAALEANHTWSLTSLPLGKKPIGCRWVYKIKRHSDGTIERFKARLVAKGYT 905
Query: 288 *VKGLDYTKTFAPVAKMVTI 229
++G+DY TF+P AKM+T+
Sbjct: 906 QLEGIDYHDTFSPTAKMITV 925
Score = 41.6 bits (96), Expect(3) = 3e-28
Identities = 15/25 (60%), Positives = 21/25 (84%)
Frame = -2
Query: 188 IHKMDVHNVFLHDNLHEEVYMKLPP 114
+H++DV+N FLH +LHEE+YM PP
Sbjct: 939 LHQLDVNNAFLHGDLHEEIYMSPPP 963
Score = 38.5 bits (88), Expect(3) = 3e-28
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Frame = -3
Query: 691 SQLPHHPQQKLIDFVCNNIL--GFYAVVSSSSLGICSYPLTHYIFYEKFS 548
SQ PHHP L D+VCN + +SSS YPL +++ Y ++S
Sbjct: 770 SQRPHHPPMALRDYVCNQVTFPNHLPPLSSSPQKGTRYPLCNFVSYHRYS 819
>emb|CAN60829.1| hypothetical protein VITISV_012059 [Vitis vinifera]
Length = 1128
Score = 98.6 bits (244), Expect(2) = 7e-28
Identities = 46/84 (54%), Positives = 60/84 (71%)
Frame = -1
Query: 480 LSIPHWPDARRSEIDALARNKTWNITTLPPEKKASGCK*VYKIKRKSDGSIEQYKAQLVI 301
+SIPHW A EI AL NKTW++ LPP K A GCK VY++K K+DGS+E+YKA+LV
Sbjct: 623 VSIPHWQTAMTDEIKALKHNKTWDLAILPPNKTAIGCKWVYRVKFKADGSVERYKARLVA 682
Query: 300 LENT*VKGLDYTKTFAPVAKMVTI 229
T +GLD+ T++PVAKM T+
Sbjct: 683 KGYTQQEGLDFFDTYSPVAKMTTV 706
Score = 53.5 bits (127), Expect(2) = 7e-28
Identities = 25/60 (41%), Positives = 38/60 (63%)
Frame = -2
Query: 188 IHKMDVHNVFLHDNLHEEVYMKLPPXXXXXXXXXXXKLRMSLHGFKQTP*YWFEKLTGAL 9
+H++DV+N FLH +L+EEVYM+LP KL+ SL+G +Q W+ KL+ +L
Sbjct: 720 LHQLDVNNAFLHGDLNEEVYMQLPLGFSTPNDPRVCKLKKSLYGLRQASRQWYSKLSSSL 779
>gb|AAG51258.1|AC025782_3 Ty1/copia-element polyprotein [Arabidopsis thaliana]
Length = 1152
Score = 80.9 bits (198), Expect(3) = 1e-27
Identities = 41/79 (51%), Positives = 55/79 (69%)
Frame = -1
Query: 465 WPDARRSEIDALARNKTWNITTLPPEKKASGCK*VYKIKRKSDGSIEQYKAQLVILENT* 286
W +A E+DAL TW+IT LP KA G K V++IK S+G++E+YKA+LV L N
Sbjct: 947 WRNAVFFEVDALEDQGTWDITKLPQGVKAIGSKWVFRIKYNSNGTVERYKARLVALGNHQ 1006
Query: 285 VKGLDYTKTFAPVAKMVTI 229
+G+D+TKTFAPV KM T+
Sbjct: 1007 KEGIDFTKTFAPVVKMQTV 1025
Score = 65.5 bits (158), Expect(3) = 1e-27
Identities = 30/63 (47%), Positives = 41/63 (65%)
Frame = -2
Query: 197 EMEIHKMDVHNVFLHDNLHEEVYMKLPPXXXXXXXXXXXKLRMSLHGFKQTP*YWFEKLT 18
+ E+H+MDVHN FLH +L E++YMK PP KL+ S++G KQ P WFEKL+
Sbjct: 1036 DWELHQMDVHNAFLHGDLKEDIYMKPPPGFKTTDPSLVCKLKKSIYGLKQAPRCWFEKLS 1095
Query: 17 GAL 9
+L
Sbjct: 1096 TSL 1098
Score = 25.0 bits (53), Expect(3) = 1e-27
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = -3
Query: 610 SSSLGICSYPLTHYIFYEKFS 548
S ++G C YP+ +Y+ E FS
Sbjct: 899 SDNIGTCIYPMANYVSGEIFS 919
>gb|AAP21414.1| putative polyprotein [Oryza sativa Japonica Group]
gi|108711651|gb|ABF99446.1| retrotransposon protein,
putative, unclassified [Oryza sativa Japonica Group]
Length = 1393
Score = 92.0 bits (227), Expect(2) = 1e-26
Identities = 40/81 (49%), Positives = 58/81 (71%)
Frame = -1
Query: 471 PHWPDARRSEIDALARNKTWNITTLPPEKKASGCK*VYKIKRKSDGSIEQYKAQLVILEN 292
P W DA + E++AL +NKTW + LPPEK+A GCK V+ +K+ +G +++YKA+LV
Sbjct: 894 PKWKDAMKEELNALVKNKTWELVKLPPEKRAVGCKWVFTVKQTPEGKVDRYKARLVAKGY 953
Query: 291 T*VKGLDYTKTFAPVAKMVTI 229
+ G+DY +TFAPVAKM T+
Sbjct: 954 SQTYGIDYDETFAPVAKMGTV 974
Score = 55.8 bits (133), Expect(2) = 1e-26
Identities = 27/61 (44%), Positives = 39/61 (63%), Gaps = 1/61 (1%)
Frame = -2
Query: 188 IHKMDVHNVFLHDNLHEEVYMKLPP-XXXXXXXXXXXKLRMSLHGFKQTP*YWFEKLTGA 12
+H++DV N FLH +LHEEVYM++PP KL+ SL+G KQ+P WF++ A
Sbjct: 988 LHQLDVKNAFLHGDLHEEVYMEIPPGFGNSQTVGKVCKLKKSLYGLKQSPRAWFDRFRHA 1047
Query: 11 L 9
+
Sbjct: 1048 V 1048
>ref|XP_006365584.1| PREDICTED: uncharacterized protein LOC102598606 [Solanum tuberosum]
Length = 1453
Score = 88.2 bits (217), Expect(2) = 2e-26
Identities = 41/81 (50%), Positives = 55/81 (67%)
Frame = -1
Query: 471 PHWPDARRSEIDALARNKTWNITTLPPEKKASGCK*VYKIKRKSDGSIEQYKAQLVILEN 292
P W A E AL N TW++ LP KK+ GC+ VYK+K K+DGS+E+YKA+LV+
Sbjct: 705 PAWQTAMTQEFTALHDNNTWSLMPLPIGKKSVGCRWVYKVKHKADGSVERYKARLVVKGY 764
Query: 291 T*VKGLDYTKTFAPVAKMVTI 229
T G+DYT+TF+PV KM T+
Sbjct: 765 TQHHGIDYTETFSPVVKMTTV 785
Score = 59.3 bits (142), Expect(2) = 2e-26
Identities = 29/63 (46%), Positives = 39/63 (61%)
Frame = -2
Query: 197 EMEIHKMDVHNVFLHDNLHEEVYMKLPPXXXXXXXXXXXKLRMSLHGFKQTP*YWFEKLT 18
+ I+++DV+N FLH +L+EEVYM +PP KL SL+G KQ W+EKLT
Sbjct: 796 QWSIYQLDVNNAFLHGDLNEEVYMDVPPGLDVPHTGLVCKLNKSLYGLKQASRQWYEKLT 855
Query: 17 GAL 9
AL
Sbjct: 856 AAL 858