BLASTX nr result
ID: Catharanthus23_contig00022649
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Catharanthus23_contig00022649
(875 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_004245997.1| PREDICTED: DNA-directed RNA polymerase III s... 212 2e-52
ref|XP_006366884.1| PREDICTED: DNA-directed RNA polymerase III s... 209 1e-51
ref|XP_003635403.1| PREDICTED: DNA-directed RNA polymerase III s... 202 2e-49
emb|CBI33284.3| unnamed protein product [Vitis vinifera] 200 5e-49
ref|XP_003635557.1| PREDICTED: DNA-directed RNA polymerase III s... 200 5e-49
emb|CBI36309.3| unnamed protein product [Vitis vinifera] 200 7e-49
ref|XP_002266428.1| PREDICTED: DNA-directed RNA polymerase III s... 200 7e-49
dbj|BAJ53222.1| JHL06P13.1 [Jatropha curcas] 196 1e-47
ref|XP_003551792.1| PREDICTED: DNA-directed RNA polymerase III s... 189 1e-45
ref|XP_002324707.1| hypothetical protein POPTR_0018s04220g [Popu... 189 1e-45
ref|XP_002297621.2| hypothetical protein POPTR_0001s04090g [Popu... 189 2e-45
ref|XP_002509507.1| DNA-directed RNA polymerase III subunit F, p... 188 3e-45
gb|ESW11339.1| hypothetical protein PHAVU_008G021700g [Phaseolus... 187 4e-45
ref|XP_006427248.1| hypothetical protein CICLE_v10026399mg [Citr... 176 8e-42
ref|XP_006465349.1| PREDICTED: DNA-directed RNA polymerase III s... 176 1e-41
ref|XP_006475958.1| PREDICTED: DNA-directed RNA polymerase III s... 173 9e-41
ref|XP_006475959.1| PREDICTED: DNA-directed RNA polymerase III s... 172 1e-40
gb|EXB67305.1| DNA-directed RNA polymerase III subunit RPC6 [Mor... 172 2e-40
gb|EMJ10006.1| hypothetical protein PRUPE_ppa024742mg [Prunus pe... 171 2e-40
gb|EOY25790.1| DNA-directed RNA polymerase III subunit rpc6, put... 171 4e-40
>ref|XP_004245997.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc6-like
isoform 1 [Solanum lycopersicum]
gi|460400960|ref|XP_004245998.1| PREDICTED: DNA-directed
RNA polymerase III subunit rpc6-like isoform 2 [Solanum
lycopersicum]
Length = 237
Score = 212 bits (539), Expect = 2e-52
Identities = 107/181 (59%), Positives = 138/181 (76%)
Frame = -1
Query: 545 MSHSGEAASLKRKRPGSNPVTQSLPDAERAVLNVITSKENMGIWVRDIKKETNLSDTVVN 366
MS S EAA+LKRKRP S+ TQ L DAE VLNV+ SK+N G+WV D+KKE N++ +V+
Sbjct: 1 MSRSSEAAALKRKRPDSS--TQGLVDAELVVLNVVKSKKNQGVWVADVKKEANIAPALVD 58
Query: 365 XXXXXXXXXXLIKEFVNIQNKGRKHYMAMEFEPSKEVTGGAWYVEGNLDKGFINELKELC 186
LIK+ +IQNK +K+YMA+E+EPS+E+TGGAWY EG LDK FI L+E C
Sbjct: 59 KCLTSLVKKNLIKKVPSIQNKAKKYYMAVEYEPSEELTGGAWYSEGKLDKEFITVLRETC 118
Query: 185 LRIISLQKVATVETVYDFLEKKKAVKVACTKQQIAEIVNSLVLDNEIIEVKSTGLGEYHS 6
L++I + KVATVE ++DFL+K+K V+ CT QQ+ EI+NS+VLD+ IIEVKSTGLGEYHS
Sbjct: 119 LKVIGMMKVATVEGIHDFLKKRKVVE-CCTSQQVGEILNSMVLDDSIIEVKSTGLGEYHS 177
Query: 5 I 3
I
Sbjct: 178 I 178
>ref|XP_006366884.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc6-like
[Solanum tuberosum]
Length = 237
Score = 209 bits (532), Expect = 1e-51
Identities = 106/181 (58%), Positives = 137/181 (75%)
Frame = -1
Query: 545 MSHSGEAASLKRKRPGSNPVTQSLPDAERAVLNVITSKENMGIWVRDIKKETNLSDTVVN 366
MS S EAA++KRKR S+ TQ L DAE VLNV+ SK+N+G+WV D+KKE N++ +V+
Sbjct: 1 MSRSSEAAAMKRKRLDSS--TQGLVDAEFVVLNVVKSKKNLGVWVADVKKEANIAPALVD 58
Query: 365 XXXXXXXXXXLIKEFVNIQNKGRKHYMAMEFEPSKEVTGGAWYVEGNLDKGFINELKELC 186
LIK+ IQNK +KHYMA+E+EPS+E+TGGAWY EG LDK FI L+E C
Sbjct: 59 KCLTSLVKKNLIKKVPTIQNKAKKHYMAVEYEPSEELTGGAWYSEGKLDKEFITVLRETC 118
Query: 185 LRIISLQKVATVETVYDFLEKKKAVKVACTKQQIAEIVNSLVLDNEIIEVKSTGLGEYHS 6
L++I + KVATVE ++DFL+K+K V+ CT QQ+ EI+NS+VLD+ IIEVKSTGLGEYHS
Sbjct: 119 LKVIGMMKVATVEGIHDFLKKRKVVE-CCTSQQVGEILNSMVLDDAIIEVKSTGLGEYHS 177
Query: 5 I 3
I
Sbjct: 178 I 178
>ref|XP_003635403.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6-like [Vitis
vinifera]
Length = 239
Score = 202 bits (513), Expect = 2e-49
Identities = 105/181 (58%), Positives = 132/181 (72%)
Frame = -1
Query: 545 MSHSGEAASLKRKRPGSNPVTQSLPDAERAVLNVITSKENMGIWVRDIKKETNLSDTVVN 366
MS S + +SLKRKRP +N +Q L DAER + ++I SKE+MGIW RD+K+ETNL D VV
Sbjct: 1 MSRS-QGSSLKRKRPDTNTASQPLLDAERVLYDLIRSKEDMGIWTRDMKRETNLPDNVVT 59
Query: 365 XXXXXXXXXXLIKEFVNIQNKGRKHYMAMEFEPSKEVTGGAWYVEGNLDKGFINELKELC 186
LIKE VNIQ+KGRKHYMA+EFEPSKE+TGGAWYVEGNLD +I LKE C
Sbjct: 60 KSLKALQVKKLIKEVVNIQSKGRKHYMAVEFEPSKELTGGAWYVEGNLDTEYIKILKETC 119
Query: 185 LRIISLQKVATVETVYDFLEKKKAVKVACTKQQIAEIVNSLVLDNEIIEVKSTGLGEYHS 6
+R++S KVAT E + + + K C+ QQIAEI+ +LVLDNEI+EV+S+G GE+ S
Sbjct: 120 VRVLSKLKVATAEGISESINKTGLCATECSTQQIAEILRALVLDNEIMEVRSSGSGEFSS 179
Query: 5 I 3
I
Sbjct: 180 I 180
>emb|CBI33284.3| unnamed protein product [Vitis vinifera]
Length = 300
Score = 200 bits (509), Expect = 5e-49
Identities = 104/181 (57%), Positives = 132/181 (72%)
Frame = -1
Query: 545 MSHSGEAASLKRKRPGSNPVTQSLPDAERAVLNVITSKENMGIWVRDIKKETNLSDTVVN 366
MS S + +SLKRKRP +N +Q L DAER + ++I SKE+MGIW RD+K+ETNL D VV
Sbjct: 62 MSRS-QGSSLKRKRPDTNTASQPLLDAERVLYDLIRSKEDMGIWTRDMKRETNLPDNVVT 120
Query: 365 XXXXXXXXXXLIKEFVNIQNKGRKHYMAMEFEPSKEVTGGAWYVEGNLDKGFINELKELC 186
LIKE VNIQ+KGRKHYMA+EFEPSKE+TGGAWYVEGNLD +I LK+ C
Sbjct: 121 KSLKALQVKKLIKEVVNIQSKGRKHYMAVEFEPSKELTGGAWYVEGNLDTEYIKILKKTC 180
Query: 185 LRIISLQKVATVETVYDFLEKKKAVKVACTKQQIAEIVNSLVLDNEIIEVKSTGLGEYHS 6
+R++S KVAT E + + + K C+ QQIAEI+ +LVLDNEI+EV+S+G GE+ S
Sbjct: 181 VRVLSKLKVATAEGISESINKTGLCATECSTQQIAEILRALVLDNEIMEVRSSGSGEFSS 240
Query: 5 I 3
I
Sbjct: 241 I 241
>ref|XP_003635557.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6-like [Vitis
vinifera]
Length = 239
Score = 200 bits (509), Expect = 5e-49
Identities = 104/181 (57%), Positives = 132/181 (72%)
Frame = -1
Query: 545 MSHSGEAASLKRKRPGSNPVTQSLPDAERAVLNVITSKENMGIWVRDIKKETNLSDTVVN 366
MS S + +SLKRKRP +N +Q L DAER + ++I SKE+MGIW RD+K+ETNL D VV
Sbjct: 1 MSRS-QGSSLKRKRPDTNTASQPLLDAERVLYDLIRSKEDMGIWTRDMKRETNLPDNVVT 59
Query: 365 XXXXXXXXXXLIKEFVNIQNKGRKHYMAMEFEPSKEVTGGAWYVEGNLDKGFINELKELC 186
LIKE VNIQ+KGRKHYMA+EFEPSKE+TGGAWYVEGNLD +I LK+ C
Sbjct: 60 KSLKALQVKKLIKEVVNIQSKGRKHYMAVEFEPSKELTGGAWYVEGNLDTEYIKILKKTC 119
Query: 185 LRIISLQKVATVETVYDFLEKKKAVKVACTKQQIAEIVNSLVLDNEIIEVKSTGLGEYHS 6
+R++S KVAT E + + + K C+ QQIAEI+ +LVLDNEI+EV+S+G GE+ S
Sbjct: 120 VRVLSKLKVATAEGISESINKTGLCATECSTQQIAEILRALVLDNEIMEVRSSGSGEFSS 179
Query: 5 I 3
I
Sbjct: 180 I 180
>emb|CBI36309.3| unnamed protein product [Vitis vinifera]
Length = 493
Score = 200 bits (508), Expect = 7e-49
Identities = 104/181 (57%), Positives = 131/181 (72%)
Frame = -1
Query: 545 MSHSGEAASLKRKRPGSNPVTQSLPDAERAVLNVITSKENMGIWVRDIKKETNLSDTVVN 366
MS S + SLKRKRP +N +Q L DAER + ++I SKE+MGIW RD+K+ETNL D VV
Sbjct: 91 MSRS-QGLSLKRKRPDTNAASQPLLDAERVLYDLIRSKEDMGIWTRDMKRETNLPDNVVT 149
Query: 365 XXXXXXXXXXLIKEFVNIQNKGRKHYMAMEFEPSKEVTGGAWYVEGNLDKGFINELKELC 186
LIKE VNIQ+KGRKHYMA+EFEPSKE+TGGAWYVEGNLD +I LKE C
Sbjct: 150 KSLKALQVKKLIKEVVNIQSKGRKHYMAVEFEPSKELTGGAWYVEGNLDTEYIKILKETC 209
Query: 185 LRIISLQKVATVETVYDFLEKKKAVKVACTKQQIAEIVNSLVLDNEIIEVKSTGLGEYHS 6
++++S KVAT E + + + K C+ QQIAEI+ +LVLDNEI+EV+S+G GE+ S
Sbjct: 210 VKVLSKLKVATAEGISESINKTGLCATECSTQQIAEILRALVLDNEIMEVRSSGSGEFSS 269
Query: 5 I 3
I
Sbjct: 270 I 270
>ref|XP_002266428.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6-like [Vitis
vinifera]
Length = 239
Score = 200 bits (508), Expect = 7e-49
Identities = 104/181 (57%), Positives = 131/181 (72%)
Frame = -1
Query: 545 MSHSGEAASLKRKRPGSNPVTQSLPDAERAVLNVITSKENMGIWVRDIKKETNLSDTVVN 366
MS S + SLKRKRP +N +Q L DAER + ++I SKE+MGIW RD+K+ETNL D VV
Sbjct: 1 MSRS-QGLSLKRKRPDTNAASQPLLDAERVLYDLIRSKEDMGIWTRDMKRETNLPDNVVT 59
Query: 365 XXXXXXXXXXLIKEFVNIQNKGRKHYMAMEFEPSKEVTGGAWYVEGNLDKGFINELKELC 186
LIKE VNIQ+KGRKHYMA+EFEPSKE+TGGAWYVEGNLD +I LKE C
Sbjct: 60 KSLKALQVKKLIKEVVNIQSKGRKHYMAVEFEPSKELTGGAWYVEGNLDTEYIKILKETC 119
Query: 185 LRIISLQKVATVETVYDFLEKKKAVKVACTKQQIAEIVNSLVLDNEIIEVKSTGLGEYHS 6
++++S KVAT E + + + K C+ QQIAEI+ +LVLDNEI+EV+S+G GE+ S
Sbjct: 120 VKVLSKLKVATAEGISESINKTGLCATECSTQQIAEILRALVLDNEIMEVRSSGSGEFSS 179
Query: 5 I 3
I
Sbjct: 180 I 180
>dbj|BAJ53222.1| JHL06P13.1 [Jatropha curcas]
Length = 235
Score = 196 bits (497), Expect = 1e-47
Identities = 102/171 (59%), Positives = 122/171 (71%)
Frame = -1
Query: 515 KRKRPGSNPVTQSLPDAERAVLNVITSKENMGIWVRDIKKETNLSDTVVNXXXXXXXXXX 336
KRK+P SN QSL + E+A+ N I SK++MGIW RD+K+ETNL DTVVN
Sbjct: 8 KRKQPESNSSAQSLTEHEQALYNAIRSKQDMGIWTRDMKRETNLPDTVVNKSLKVLQAKN 67
Query: 335 LIKEFVNIQNKGRKHYMAMEFEPSKEVTGGAWYVEGNLDKGFINELKELCLRIISLQKVA 156
LIKE VNIQNKGRK+YMA EFEPSKE+TGG WYVEGNLD FI LK+ C + I KVA
Sbjct: 68 LIKEVVNIQNKGRKYYMATEFEPSKEITGGTWYVEGNLDTMFIGVLKDQCKKQIEKLKVA 127
Query: 155 TVETVYDFLEKKKAVKVACTKQQIAEIVNSLVLDNEIIEVKSTGLGEYHSI 3
TVE V DF+ + V TKQQI EI+ +LVLDN++ EVKS G+GE+ SI
Sbjct: 128 TVEAVTDFINRTGVSTVHLTKQQIEEILKALVLDNKVTEVKSNGMGEFASI 178
>ref|XP_003551792.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6-like
[Glycine max]
Length = 239
Score = 189 bits (480), Expect = 1e-45
Identities = 99/181 (54%), Positives = 125/181 (69%)
Frame = -1
Query: 545 MSHSGEAASLKRKRPGSNPVTQSLPDAERAVLNVITSKENMGIWVRDIKKETNLSDTVVN 366
MSH ++SLKRKR VT SL D ER + N+I SK++MGIW D+K+ETNL D++V
Sbjct: 1 MSHLQGSSSLKRKRQDLALVTGSLTDGERVLYNLIHSKKDMGIWTGDMKRETNLPDSIVK 60
Query: 365 XXXXXXXXXXLIKEFVNIQNKGRKHYMAMEFEPSKEVTGGAWYVEGNLDKGFINELKELC 186
LIKE VNIQNKGRKHYMA EFEPSKE+TGG WY +G LD FIN +K++C
Sbjct: 61 KSLKLLQSKNLIKEVVNIQNKGRKHYMAAEFEPSKEITGGVWYNQGRLDTDFINLVKDVC 120
Query: 185 LRIISLQKVATVETVYDFLEKKKAVKVACTKQQIAEIVNSLVLDNEIIEVKSTGLGEYHS 6
L+ I QKVAT + V ++ K V T QQI EI+ +LVLD+EI+EVKSTG G++ S
Sbjct: 121 LKYIFRQKVATRDGVMEWSRKSGVFNVEVTTQQIDEILRTLVLDDEIVEVKSTGFGDFSS 180
Query: 5 I 3
+
Sbjct: 181 V 181
>ref|XP_002324707.1| hypothetical protein POPTR_0018s04220g [Populus trichocarpa]
gi|222866141|gb|EEF03272.1| hypothetical protein
POPTR_0018s04220g [Populus trichocarpa]
Length = 239
Score = 189 bits (480), Expect = 1e-45
Identities = 101/181 (55%), Positives = 124/181 (68%)
Frame = -1
Query: 545 MSHSGEAASLKRKRPGSNPVTQSLPDAERAVLNVITSKENMGIWVRDIKKETNLSDTVVN 366
MS +SLKRKRP N QSL + ER + +VI SK+++GIW RD+KKE L D VVN
Sbjct: 1 MSRLQGPSSLKRKRPEVNSPAQSLTEHERLLYDVIRSKQDIGIWTRDMKKEAKLPDNVVN 60
Query: 365 XXXXXXXXXXLIKEFVNIQNKGRKHYMAMEFEPSKEVTGGAWYVEGNLDKGFINELKELC 186
LIKE VNIQNKGRKH+MA EFEPSKE++GGAWY+EG+LD FI LK+LC
Sbjct: 61 KSLKALQVKKLIKEVVNIQNKGRKHFMATEFEPSKEISGGAWYLEGSLDTEFIESLKQLC 120
Query: 185 LRIISLQKVATVETVYDFLEKKKAVKVACTKQQIAEIVNSLVLDNEIIEVKSTGLGEYHS 6
R I + VAT+E V D + A V TKQQI EI+ +L+LDN I+EVKS G+GE+ S
Sbjct: 121 KRQIERRGVATLEEVTDSINSYPAFNVDVTKQQIEEILRTLILDNVIMEVKSNGMGEFAS 180
Query: 5 I 3
I
Sbjct: 181 I 181
>ref|XP_002297621.2| hypothetical protein POPTR_0001s04090g [Populus trichocarpa]
gi|550346475|gb|EEE82426.2| hypothetical protein
POPTR_0001s04090g [Populus trichocarpa]
Length = 291
Score = 189 bits (479), Expect = 2e-45
Identities = 100/183 (54%), Positives = 125/183 (68%)
Frame = -1
Query: 551 IRMSHSGEAASLKRKRPGSNPVTQSLPDAERAVLNVITSKENMGIWVRDIKKETNLSDTV 372
+ MS +SLKRKRP N QSL + ER + +VI SK+++GIW RD+KKE L D V
Sbjct: 51 VGMSRVQGPSSLKRKRPELNSPVQSLTEHERILYDVIRSKQDIGIWTRDMKKEAKLPDNV 110
Query: 371 VNXXXXXXXXXXLIKEFVNIQNKGRKHYMAMEFEPSKEVTGGAWYVEGNLDKGFINELKE 192
VN LIKE VNIQNKGRKH+MA EFEPSKE++GGAWY+EG+LD FI L++
Sbjct: 111 VNKSLKALRVKNLIKEVVNIQNKGRKHFMATEFEPSKEISGGAWYLEGSLDTEFIESLRQ 170
Query: 191 LCLRIISLQKVATVETVYDFLEKKKAVKVACTKQQIAEIVNSLVLDNEIIEVKSTGLGEY 12
LC R I + VAT+E V D + A V TKQQI EI+ +L+LDN I+EVKS G+GE+
Sbjct: 171 LCKRQIEKKGVATLEEVTDSINSYPAFNVDVTKQQIEEILRTLILDNAIMEVKSNGMGEF 230
Query: 11 HSI 3
SI
Sbjct: 231 ASI 233
>ref|XP_002509507.1| DNA-directed RNA polymerase III subunit F, putative [Ricinus
communis] gi|223549406|gb|EEF50894.1| DNA-directed RNA
polymerase III subunit F, putative [Ricinus communis]
Length = 236
Score = 188 bits (477), Expect = 3e-45
Identities = 99/173 (57%), Positives = 121/173 (69%)
Frame = -1
Query: 521 SLKRKRPGSNPVTQSLPDAERAVLNVITSKENMGIWVRDIKKETNLSDTVVNXXXXXXXX 342
+LKRK+P S+ QSL + E + NVI SK++MGIW RD+K+ETNL D VVN
Sbjct: 6 ALKRKQPESSSPAQSLTEHECTLYNVIWSKQDMGIWTRDMKRETNLPDNVVNKSLKVLQA 65
Query: 341 XXLIKEFVNIQNKGRKHYMAMEFEPSKEVTGGAWYVEGNLDKGFINELKELCLRIISLQK 162
LIKE VNIQNKGRKHYMA EFEPSKE+TGGAWYVEGNLD FI LKE+C + + K
Sbjct: 66 KNLIKEVVNIQNKGRKHYMATEFEPSKEITGGAWYVEGNLDTEFIKLLKEVCTKQVLKLK 125
Query: 161 VATVETVYDFLEKKKAVKVACTKQQIAEIVNSLVLDNEIIEVKSTGLGEYHSI 3
VAT+E + D +++ TKQQI EIV +LVLDN +IEVKS G+ E+ I
Sbjct: 126 VATLEGITDSIKRSGIFNTELTKQQIEEIVKALVLDNALIEVKSNGMLEFSFI 178
>gb|ESW11339.1| hypothetical protein PHAVU_008G021700g [Phaseolus vulgaris]
Length = 239
Score = 187 bits (475), Expect = 4e-45
Identities = 99/181 (54%), Positives = 126/181 (69%)
Frame = -1
Query: 545 MSHSGEAASLKRKRPGSNPVTQSLPDAERAVLNVITSKENMGIWVRDIKKETNLSDTVVN 366
MS E++SLKRKR V+ S+ D ER + N+I SK++MGIW D+K+ETNL D++V
Sbjct: 1 MSQLQESSSLKRKRQDLALVSGSMTDGERVLYNLIHSKKDMGIWTGDMKRETNLPDSIVK 60
Query: 365 XXXXXXXXXXLIKEFVNIQNKGRKHYMAMEFEPSKEVTGGAWYVEGNLDKGFINELKELC 186
LIKE VNIQNKGRKHYMA EFEPSKE+TGG WY +G+LD FIN +KE+C
Sbjct: 61 KSLKLLQSKNLIKEVVNIQNKGRKHYMAAEFEPSKEITGGDWYTQGSLDTDFINLVKEVC 120
Query: 185 LRIISLQKVATVETVYDFLEKKKAVKVACTKQQIAEIVNSLVLDNEIIEVKSTGLGEYHS 6
L+ I QKVAT + V ++ K V T QQI EI+ +LVLD+EI EVKSTGLG++ S
Sbjct: 121 LKCIFRQKVATHDGVLEWSRKSGVFTVEVTAQQIDEILRALVLDDEIEEVKSTGLGDFSS 180
Query: 5 I 3
+
Sbjct: 181 V 181
>ref|XP_006427248.1| hypothetical protein CICLE_v10026399mg [Citrus clementina]
gi|557529238|gb|ESR40488.1| hypothetical protein
CICLE_v10026399mg [Citrus clementina]
Length = 233
Score = 176 bits (447), Expect = 8e-42
Identities = 94/173 (54%), Positives = 120/173 (69%), Gaps = 2/173 (1%)
Frame = -1
Query: 515 KRKRPGSNPVTQSLPDAERAVLNVITSKENMGIWVRDIKKE--TNLSDTVVNXXXXXXXX 342
KRKRP SN + SL D ER + +VI SK++MGIW RD+K+E NL D +V
Sbjct: 3 KRKRPDSNAPSDSLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQN 62
Query: 341 XXLIKEFVNIQNKGRKHYMAMEFEPSKEVTGGAWYVEGNLDKGFINELKELCLRIISLQK 162
LIKE VNI +KG+KH MA+EFEPSKE++GGAWY EG+LD FI +K CL+ I K
Sbjct: 63 KSLIKEVVNIHSKGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQIIKLK 122
Query: 161 VATVETVYDFLEKKKAVKVACTKQQIAEIVNSLVLDNEIIEVKSTGLGEYHSI 3
VAT+E + D +++ A KV TKQQI EIV +LVLDN+I+EVKS G GE+ +I
Sbjct: 123 VATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEVKSNGSGEFTNI 175
>ref|XP_006465349.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6-like
[Citrus sinensis]
Length = 233
Score = 176 bits (446), Expect = 1e-41
Identities = 94/173 (54%), Positives = 120/173 (69%), Gaps = 2/173 (1%)
Frame = -1
Query: 515 KRKRPGSNPVTQSLPDAERAVLNVITSKENMGIWVRDIKKE--TNLSDTVVNXXXXXXXX 342
KRKRP SN + SL D ER + +VI SK++MGIW RD+K+E NL D +V
Sbjct: 3 KRKRPESNAPSDSLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQN 62
Query: 341 XXLIKEFVNIQNKGRKHYMAMEFEPSKEVTGGAWYVEGNLDKGFINELKELCLRIISLQK 162
LIKE VNI +KG+KH MA+EFEPSKE++GGAWY EG+LD FI +K CL+ I K
Sbjct: 63 KSLIKEVVNIHSKGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQIIKLK 122
Query: 161 VATVETVYDFLEKKKAVKVACTKQQIAEIVNSLVLDNEIIEVKSTGLGEYHSI 3
VAT+E + D +++ A KV TKQQI EIV +LVLDN+I+EVKS G GE+ +I
Sbjct: 123 VATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEVKSNGSGEFTNI 175
>ref|XP_006475958.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6-like
isoform X1 [Citrus sinensis]
Length = 252
Score = 173 bits (438), Expect = 9e-41
Identities = 96/194 (49%), Positives = 130/194 (67%), Gaps = 4/194 (2%)
Frame = -1
Query: 572 VQWSFAKIRMSHSGEAASL-KRKRPGSNPVTQSLPDAERAVLNVITS-KENMGIWVRDIK 399
+++SF + + + + + KRKRP SN + SL D ER + +VI S K++MGIW RD+K
Sbjct: 1 MKYSFTDLYLLGLAKGSGMSKRKRPDSNAPSDSLTDHERLIYDVIRSNKQDMGIWTRDMK 60
Query: 398 KE--TNLSDTVVNXXXXXXXXXXLIKEFVNIQNKGRKHYMAMEFEPSKEVTGGAWYVEGN 225
+E NL D +V LIKE VNI NKG+KH MA+EFEPSKE++GGAWY EG+
Sbjct: 61 RELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNKGKKHLMAVEFEPSKEISGGAWYSEGS 120
Query: 224 LDKGFINELKELCLRIISLQKVATVETVYDFLEKKKAVKVACTKQQIAEIVNSLVLDNEI 45
LD FI +K CL+ I KVAT+E + D +++ A KV TKQQI EIV ++VLDN+I
Sbjct: 121 LDTEFIKVVKSQCLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQI 180
Query: 44 IEVKSTGLGEYHSI 3
+EVKS G GE+ +I
Sbjct: 181 MEVKSNGSGEFTNI 194
>ref|XP_006475959.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6-like
isoform X2 [Citrus sinensis]
Length = 234
Score = 172 bits (437), Expect = 1e-40
Identities = 94/174 (54%), Positives = 120/174 (68%), Gaps = 3/174 (1%)
Frame = -1
Query: 515 KRKRPGSNPVTQSLPDAERAVLNVITS-KENMGIWVRDIKKE--TNLSDTVVNXXXXXXX 345
KRKRP SN + SL D ER + +VI S K++MGIW RD+K+E NL D +V
Sbjct: 3 KRKRPDSNAPSDSLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQ 62
Query: 344 XXXLIKEFVNIQNKGRKHYMAMEFEPSKEVTGGAWYVEGNLDKGFINELKELCLRIISLQ 165
LIKE VNI NKG+KH MA+EFEPSKE++GGAWY EG+LD FI +K CL+ I
Sbjct: 63 NKSLIKEVVNIHNKGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQIIKL 122
Query: 164 KVATVETVYDFLEKKKAVKVACTKQQIAEIVNSLVLDNEIIEVKSTGLGEYHSI 3
KVAT+E + D +++ A KV TKQQI EIV ++VLDN+I+EVKS G GE+ +I
Sbjct: 123 KVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKSNGSGEFTNI 176
>gb|EXB67305.1| DNA-directed RNA polymerase III subunit RPC6 [Morus notabilis]
Length = 238
Score = 172 bits (435), Expect = 2e-40
Identities = 89/181 (49%), Positives = 118/181 (65%)
Frame = -1
Query: 545 MSHSGEAASLKRKRPGSNPVTQSLPDAERAVLNVITSKENMGIWVRDIKKETNLSDTVVN 366
MS E +SLKRK+P S SL + ER + NVI SK++MGIW++D+K+ + D V N
Sbjct: 1 MSRLQEPSSLKRKQPDSRSPLDSLTEHERIIYNVIRSKQDMGIWMQDMKRVAKVPDNVAN 60
Query: 365 XXXXXXXXXXLIKEFVNIQNKGRKHYMAMEFEPSKEVTGGAWYVEGNLDKGFINELKELC 186
LIKE VNIQ +G+KHY+A EFEP+ E+TGGAWY G +D IN LK+ C
Sbjct: 61 KALKSLETKKLIKEVVNIQKRGKKHYVAAEFEPATEITGGAWYSNGKMDFVVINILKDQC 120
Query: 185 LRIISLQKVATVETVYDFLEKKKAVKVACTKQQIAEIVNSLVLDNEIIEVKSTGLGEYHS 6
L+ I Q+VAT+E + D + K V T QI E+V +LVLDNE++EVKS G+GE+ S
Sbjct: 121 LKWIYKQRVATLEGILDAIRKSGISNVELTTVQIEELVRALVLDNEVVEVKSNGMGEFDS 180
Query: 5 I 3
I
Sbjct: 181 I 181
>gb|EMJ10006.1| hypothetical protein PRUPE_ppa024742mg [Prunus persica]
Length = 236
Score = 171 bits (434), Expect = 2e-40
Identities = 90/173 (52%), Positives = 120/173 (69%)
Frame = -1
Query: 524 ASLKRKRPGSNPVTQSLPDAERAVLNVITSKENMGIWVRDIKKETNLSDTVVNXXXXXXX 345
++LKRK+P S+ ++SL + E+ V +VI SK++MGIW RD+KKE NL D +V
Sbjct: 5 SALKRKQPDSSSPSESLTEHEKIVYSVIRSKQDMGIWTRDMKKEANLPDNLVGKSIKSLQ 64
Query: 344 XXXLIKEFVNIQNKGRKHYMAMEFEPSKEVTGGAWYVEGNLDKGFINELKELCLRIISLQ 165
LIKE VN+Q+KGRKHYMA EFEPSKE+TGG WY G LDK +I+ +K+ +II
Sbjct: 65 AKNLIKEVVNVQSKGRKHYMAAEFEPSKELTGGDWYSNGTLDKYYISCVKDGFAKIIYQL 124
Query: 164 KVATVETVYDFLEKKKAVKVACTKQQIAEIVNSLVLDNEIIEVKSTGLGEYHS 6
KVAT+E + D ++K K + TKQQI EI+ LVLD + EVKSTG+GE+ S
Sbjct: 125 KVATLEGISDEVKKSGIFKTSFTKQQIEEILRVLVLDKRVTEVKSTGMGEFGS 177
>gb|EOY25790.1| DNA-directed RNA polymerase III subunit rpc6, putative isoform 1
[Theobroma cacao] gi|508778535|gb|EOY25791.1|
DNA-directed RNA polymerase III subunit rpc6, putative
isoform 1 [Theobroma cacao]
Length = 237
Score = 171 bits (432), Expect = 4e-40
Identities = 92/173 (53%), Positives = 121/173 (69%)
Frame = -1
Query: 521 SLKRKRPGSNPVTQSLPDAERAVLNVITSKENMGIWVRDIKKETNLSDTVVNXXXXXXXX 342
+LKRKRPG+ + SL + ER V +VI K++MGI RD+K+E NL D +V
Sbjct: 9 ALKRKRPGAT--SDSLTEHERIVHDVIQGKQDMGISQRDMKREINLPDNLVTKCLKSLLA 66
Query: 341 XXLIKEFVNIQNKGRKHYMAMEFEPSKEVTGGAWYVEGNLDKGFINELKELCLRIISLQK 162
LIKE NIQN+GRKH+++ EFEPS E+TGGAWYVEG+LD +IN LKE C R I K
Sbjct: 67 KNLIKEVKNIQNRGRKHFISAEFEPSNEITGGAWYVEGSLDTEYINVLKEQCWRKIYGLK 126
Query: 161 VATVETVYDFLEKKKAVKVACTKQQIAEIVNSLVLDNEIIEVKSTGLGEYHSI 3
VAT+E V D +++ ++ +KQQI EIV +LVLDNE++EVKS+G GE+ SI
Sbjct: 127 VATLEGVTDAIKRSNVSQIELSKQQIEEIVKALVLDNEVMEVKSSGTGEFASI 179