BLASTX nr result

ID: Catharanthus23_contig00022631 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Catharanthus23_contig00022631
         (752 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EOY32759.1| Ribonuclease H protein, putative [Theobroma cacao]      57   5e-06
ref|XP_004297900.1| PREDICTED: putative ribonuclease H protein A...    57   7e-06
ref|XP_004289445.1| PREDICTED: putative ribonuclease H protein A...    57   7e-06

>gb|EOY32759.1| Ribonuclease H protein, putative [Theobroma cacao]
          Length = 337

 Score = 57.4 bits (137), Expect = 5e-06
 Identities = 28/72 (38%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
 Frame = +2

Query: 59  WDTMCSPASHRGLLIRRLRPTNQTLLAKLCWRMINEHHVLWSQLLWRKY--GNPFLVVPG 232
           W+ +CSP    GL +R LR  N  LL KL WR++ + + LW  +L +KY   +  + V  
Sbjct: 21  WEKLCSPKEEGGLQLRNLRFLNLALLGKLGWRLLMDTNHLWVDMLQKKYLRDDNLMTVTA 80

Query: 233 AQDCSHTWRGIL 268
               SH WR IL
Sbjct: 81  KSSDSHVWRSIL 92


>ref|XP_004297900.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Fragaria
           vesca subsp. vesca]
          Length = 227

 Score = 57.0 bits (136), Expect = 7e-06
 Identities = 28/80 (35%), Positives = 47/80 (58%), Gaps = 4/80 (5%)
 Frame = +2

Query: 59  WDTMCSPASHRGLLIRRLRPTNQTLLAKLCWRMINEHHVLWSQLLWRKYGNPFLVVPGA- 235
           WDT+C P  + GL +++    NQ LLAK  WR++ +   LW++ L +KY     ++  + 
Sbjct: 30  WDTVCKPKCYGGLGLKKSSCVNQALLAKTGWRLLQKELGLWAEALNKKYLKDDCIMQKST 89

Query: 236 ---QDCSHTWRGILWDSRLL 286
                 S+TW+GIL+ ++LL
Sbjct: 90  LPFSASSNTWKGILYGAQLL 109


>ref|XP_004289445.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Fragaria
           vesca subsp. vesca]
          Length = 719

 Score = 57.0 bits (136), Expect = 7e-06
 Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 4/80 (5%)
 Frame = +2

Query: 59  WDTMCSPASHRGLLIRRLRPTNQTLLAKLCWRMINEHHVLWSQLLWRKYGNPFLVVP--- 229
           W+++C P    GL +++    NQ +LAK  WR+    H LW+ +  +KY     +     
Sbjct: 392 WESVCKPKHRGGLGLKKTADMNQAMLAKASWRIFQNDHGLWADIYRKKYLQDCCIESSNS 451

Query: 230 -GAQDCSHTWRGILWDSRLL 286
               DCS+TWRGI+    L+
Sbjct: 452 IAPADCSNTWRGIVHGVELM 471


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